Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001714

Physical Location & Seq

Genomic Coordinates Reverse (-)

26005680 .. 26006435

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG228900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTTAGAATCTCAGCCAGCCACCCAGCCCAACCACGAGCCAGAGAACGAGGAATCAGCATCTCTGAGCAAAAAGGTGGCGAAGAAAGAAGAGGCTAAGCTCAAAAAGCTCCGTCGCAACCAAGAGCAAGAAGCGGCACCGCCGCGGCTAGCGCTCGCGCTCAGTCTGCCGAGCCAGAGGACCCGCTCGCCGCTAACTACGGTGACGTGCCGCTCATTCAGCATTGAAGGACCAGAAGGTTCTGATACGCGGTCATGCACAGACGATCTGTGCCTTCTGGTCTTCGGGAAGAACATGGCGTTTAATTGTGGTAAGAAACGGAAGGAGTTCACGGTTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

12.59

Weight (kDa)

9.0

Isoelectric Point (pI)

74.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26870 AT4G31180 AT4G31180
fragaria_vesca	FvH4_2g15870 FvH4_2g15910 FvH4_2g30550
malus_domestica	MD08G1134400.v1.1 MD12G1153800.v1.1 MD14G1143300.v1.1 MD15G1113400.v1.1
prunus_persica	Prupe.1G463800_v2.0.a1 Prupe.4G141600_v2.0.a1 Prupe.8G055000_v2.0.a1
pyrus_communis	pycom08g11340 pycom15g10170 pycom16g11710
rosa_chinensis	RchiOBHm_Chr5g0032141 RchiOBHm_Chr5g0032161 RchiOBHm_Chr6g0278871 RchiOBHm_Chr6g0312531
rosa_laevigata	RLG00000010321 RLG00000033368
rosa_multiflora	Rmu_co8427103.1_g000001 Rmu_sc0003031.1_g000023 Rmu_sc0005375.1_g000002 Rmu_sc0005375.1_g000011 Rmu_sc0008363.1_g000011 Rmu_sc0043080.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048240 Rroxscaffold_1G00048270 Rroxscaffold_7G00156770
rosa_rugosa	Rorug06G0119800 Rorug06G0120000 Rorug06G0123400 Rorug06G0396100 Rorug06G0396200
rosa_samantha	Rh5DG228900 Rh6AG228300 Rh6AG513500 Rh6BG233900 Rh6BG234000 Rh6BG524200 Rh6BG526500 Rh6CG236300 Rh6CG531400 Rh6DG515600
rosa_wichuraiana	Rw6G020030 Rw6G044650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	136
AccBSI	CCGCTC	2 cut(s)	186, 213
AccII	CGCG	3 cut(s)	145, 158, 250
AciI	CCGC	8 cut(s)	134, 140, 143, 145, 184, 191, 211, 250
AfeI	AGCGCT	1 cut(s)	153
AgsI	TTSAA	1 cut(s)	227
AjiI	CACGTC	1 cut(s)	207
AluBI	AGCT	2 cut(s)	100, 109
AluI	AGCT	2 cut(s)	100, 109
Aor51HI	AGCGCT	1 cut(s)	153
Asp700I	GAANNNNTTC	1 cut(s)	326
AspLEI	GCGC	2 cut(s)	154, 160
AspS9I	GGNCC	2 cut(s)	180, 230
AsuHPI	GGTGA	1 cut(s)	214
AsuNHI	GCTAGC	1 cut(s)	148
AvaII	GGWCC	2 cut(s)	180, 230
BanI	GGYRCC	1 cut(s)	136
BauI	CACGAG	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	274
BfaI	CTAG	1 cut(s)	149
BfoI	RGCGCY	1 cut(s)	155
BisI	GCNGC	5 cut(s)	135, 143, 146, 191, 211
BlpI	GCTNAGC	1 cut(s)	96
BlsI	GCNGC	5 cut(s)	136, 144, 147, 192, 212
Bme18I	GGWCC	2 cut(s)	180, 230
BmgBI	CACGTC	1 cut(s)	207
BmgT120I	GGNCC	2 cut(s)	180, 230
BmiI	GGNNCC	2 cut(s)	138, 182
BmsI	GCATC	1 cut(s)	68
BmtI	GCTAGC	1 cut(s)	152
BpiI	GAAGAC	1 cut(s)	274
Bpu1102I	GCTNAGC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	143
BseDI	CCNNGG	1 cut(s)	143
BseMII	CTCAG	3 cut(s)	26, 56, 175
BseYI	CCCAGC	1 cut(s)	24
Bsh1236I	CGCG	3 cut(s)	145, 158, 250
BshNI	GGYRCC	1 cut(s)	136
Bsp143I	GATC	1 cut(s)	265
Bsp1720I	GCTNAGC	1 cut(s)	96
BspACI	CCGC	8 cut(s)	134, 140, 143, 145, 184, 191, 211, 250
BspCNI	CTCAG	3 cut(s)	25, 57, 174
BspFNI	CGCG	3 cut(s)	145, 158, 250
BspLI	GGNNCC	2 cut(s)	138, 182
BspOI	GCTAGC	1 cut(s)	152
BspT107I	GGYRCC	1 cut(s)	136
BsrBI	CCGCTC	2 cut(s)	186, 213
BssECI	CCNNGG	1 cut(s)	143
BssMI	GATC	1 cut(s)	265
BssSI	CACGAG	1 cut(s)	35
Bst2BI	CACGAG	1 cut(s)	35
Bst4CI	ACNGT	2 cut(s)	202, 334
Bst6I	CTCTTC	1 cut(s)	84
BstC8I	GCNNGC	4 cut(s)	18, 150, 156, 188
BstDEI	CTNAG	4 cut(s)	12, 65, 96, 161
BstDSI	CCRYGG	1 cut(s)	143
BstFNI	CGCG	3 cut(s)	145, 158, 250
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	2 cut(s)	154, 160
BstKTI	GATC	1 cut(s)	268
BstMBI	GATC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	4 cut(s)	106, 151, 166, 219
BstUI	CGCG	3 cut(s)	145, 158, 250
BstV2I	GAAGAC	1 cut(s)	274
BtgI	CCRYGG	1 cut(s)	143
BtrI	CACGTC	1 cut(s)	207
Cac8I	GCNNGC	4 cut(s)	18, 150, 156, 188
CfoI	GCGC	2 cut(s)	154, 160
Cfr13I	GGNCC	2 cut(s)	180, 230
Cfr42I	CCGCGG	1 cut(s)	146
CviAII	CATG	2 cut(s)	255, 295
CviJI	RGCY	9 cut(s)	16, 20, 28, 40, 95, 100, 109, 148, 174
CviKI_1	RGCY	9 cut(s)	16, 20, 28, 40, 95, 100, 109, 148, 174
DdeI	CTNAG	4 cut(s)	12, 65, 96, 161
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco47I	GGWCC	2 cut(s)	180, 230
Eco47III	AGCGCT	1 cut(s)	153
EcoO109I	RGGNCCY	1 cut(s)	180
FaeI	CATG	2 cut(s)	258, 298
FaiI	YATR	2 cut(s)	256, 296
FatI	CATG	2 cut(s)	254, 294
FauI	CCCGC	1 cut(s)	191
Fnu4HI	GCNGC	5 cut(s)	135, 143, 146, 191, 211
Fsp4HI	GCNGC	5 cut(s)	135, 143, 146, 191, 211
FspBI	CTAG	1 cut(s)	149
GlaI	GCGC	2 cut(s)	153, 159
GluI	GCNGC	5 cut(s)	135, 143, 146, 191, 211
GsaI	CCCAGC	1 cut(s)	28
HaeII	RGCGCY	1 cut(s)	155
HhaI	GCGC	2 cut(s)	154, 160
Hin1II	CATG	2 cut(s)	258, 298
Hin6I	GCGC	2 cut(s)	152, 158
HinP1I	GCGC	2 cut(s)	152, 158
HinfI	GANTC	2 cut(s)	8, 53
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188I	TCNGA	2 cut(s)	66, 244
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	1 cut(s)	330
Hpy99I	CGWCG	1 cut(s)	117
HpyAV	CCTTC	4 cut(s)	221, 230, 284, 316
HpyCH4III	ACNGT	2 cut(s)	202, 334
HpyCH4IV	ACGT	1 cut(s)	206
HpyCH4V	TGCA	1 cut(s)	258
HpyF10VI	GCNNNNNNNGC	4 cut(s)	106, 151, 166, 219
HpyF3I	CTNAG	4 cut(s)	12, 65, 96, 161
HpySE526I	ACGT	1 cut(s)	206
Hsp92II	CATG	2 cut(s)	258, 298
HspAI	GCGC	2 cut(s)	152, 158
KspI	CCGCGG	1 cut(s)	146
Kzo9I	GATC	1 cut(s)	265
LmnI	GCTCC	1 cut(s)	114
LpnPI	CCDG	6 cut(s)	30, 38, 54, 188, 246, 263
LweI	GCATC	1 cut(s)	68
MaeI	CTAG	1 cut(s)	149
MaeII	ACGT	1 cut(s)	206
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	1 cut(s)	267
MbiI	CCGCTC	2 cut(s)	186, 213
MboI	GATC	1 cut(s)	265
MboII	GAAGA	4 cut(s)	94, 101, 274, 301
MluCI	AATT	1 cut(s)	304
MnlI	CCTC	3 cut(s)	43, 85, 171
MroXI	GAANNNNTTC	1 cut(s)	326
MseI	TTAA	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	145
MvnI	CGCG	3 cut(s)	145, 158, 250
MwoI	GCNNNNNNNGC	4 cut(s)	106, 151, 166, 219
NdeII	GATC	1 cut(s)	265
NheI	GCTAGC	1 cut(s)	148
NlaIII	CATG	2 cut(s)	258, 298
NlaIV	GGNNCC	2 cut(s)	138, 182
NmeAIII	GCCGAG	1 cut(s)	195
NmuCI	GTSAC	1 cut(s)	202
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	2 cut(s)	8, 53
PkrI	GCNGC	5 cut(s)	136, 144, 147, 192, 212
PpuMI	RGGWCCY	1 cut(s)	180
Psp5II	RGGWCCY	1 cut(s)	180
PspFI	CCCAGC	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	138, 182
PspPI	GGNCC	2 cut(s)	180, 230
PspPPI	RGGWCCY	1 cut(s)	180
SacII	CCGCGG	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	5 cut(s)	135, 143, 146, 191, 211
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	2 cut(s)	180, 230
SetI	ASST	5 cut(s)	78, 102, 111, 209, 241
SfaNI	GCATC	1 cut(s)	68
Sfr303I	CCGCGG	1 cut(s)	146
SgrBI	CCGCGG	1 cut(s)	146
SinI	GGWCC	2 cut(s)	180, 230
Sse9I	AATT	1 cut(s)	304
SsiI	CCGC	8 cut(s)	134, 140, 143, 145, 184, 191, 211, 250
SspMI	CTAG	1 cut(s)	149
TaaI	ACNGT	2 cut(s)	202, 334
TaiI	ACGT	1 cut(s)	209
TasI	AATT	1 cut(s)	304
TauI	GCSGC	5 cut(s)	137, 145, 148, 193, 213
TfiI	GAWTC	2 cut(s)	8, 53
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TseFI	GTSAC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	202
TspGWI	ACGGA	2 cut(s)	101, 334
VpaK11BI	GGWCC	2 cut(s)	180, 230
XmnI	GAANNNNTTC	1 cut(s)	326
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.