Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001714

Physical Location & Seq

Genomic Coordinates Forward (+)

54239065 .. 54243237

Gene Structure 4173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0396200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAGGACGGTCGTGTCGCGCTTGATCCATTCAAGATCATCACTTCCCAGGCCCTTTATGATGACTGCACCTAAAAATGGGAGGTATCTCTCAGGCGAATCTAATAAGGTTGATGAGCCCTTCAAAGTTGAGGAAGCAGAGACTATTCAAGGCCCCCCTCCTCCAACAGAGAAGTTACTTGTGTTGGGTGGAAATGGATTTGTTGGCTCACATGTTTGTAGAGAAGCATTAGATCGTGGACTGTCTGTTGCTAGCCTTAGCAGGTCTGGTAGGTCAAAGTTACATGATTCATGGGCTAACAATGTGACCTGGTACCAAGGAAACCTTCTATCACCTGATTCATGGAAGGATGCTCTCGACGGTGTCACGTCTGTTATATCCTGTGTTGGTGGCTTTGGCTCCAATTCTTACATGTATAAGATTAATGGGACTGCAAACATCAATGCAATTAGAGCTGCTTCTGAGCATGGTGTGAAAAGATTTGTGTATGTCTCTGCTGCTGATTTTGGCTTGGCAAATTACTTGCTGCGAGGATATTATGAGGGAAAGAGAGCTGCCGAAACAGAGATACTAACCAAATTCCCTTATGGAGGAGTGATTTTGAGGCCTGGATTTATTTACGGGACTCGAAGTGTTGGGAGCATAAAGTTACCTCTTGGTGTAATCGGTTCTCCTCTGGAGATGTTATTTCAACAAACAAGACCTCTGAACCAGCTGCCACTAGTGGGACCTCTCTTTACTCCTCCTGTGAATGTTACTGCTGTAGCGGAGGTTGCTGTTAGAGCAGCTACCGATCCCGTCTTCCCTCCTGGGATTGTTGATATCTACGGGATTCAACGTTATACTCAGCATAAGTCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006422 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045202 GO:0046483 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0098542 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2 tRNA_anti-codon

Protein Analysis

287

Amino Acids

31.19

Weight (kDa)

9.54

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	56 - 166	1.6e-11	NmrA-like family
Epimerase	PF01370	60 - 167	2.6e-14	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	60 - 172	2.4e-10	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_10	PF13460	63 - 206	1.6e-20	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26870 AT4G31180 AT4G31180
fragaria_vesca	FvH4_2g15870 FvH4_2g15910 FvH4_2g30550
malus_domestica	MD08G1134400.v1.1 MD12G1153800.v1.1 MD14G1143300.v1.1 MD15G1113400.v1.1
prunus_persica	Prupe.1G463800_v2.0.a1 Prupe.4G141600_v2.0.a1 Prupe.8G055000_v2.0.a1
pyrus_communis	pycom08g11340 pycom15g10170 pycom16g11710
rosa_chinensis	RchiOBHm_Chr5g0032141 RchiOBHm_Chr5g0032161 RchiOBHm_Chr6g0278871 RchiOBHm_Chr6g0312531
rosa_laevigata	RLG00000010321 RLG00000033368
rosa_multiflora	Rmu_co8427103.1_g000001 Rmu_sc0003031.1_g000023 Rmu_sc0005375.1_g000002 Rmu_sc0005375.1_g000011 Rmu_sc0008363.1_g000011 Rmu_sc0043080.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048240 Rroxscaffold_1G00048270 Rroxscaffold_7G00156770
rosa_rugosa	Rorug06G0119800 Rorug06G0120000 Rorug06G0123400 Rorug06G0396100 Rorug06G0396200
rosa_samantha	Rh5DG228900 Rh6AG228300 Rh6AG513500 Rh6BG233900 Rh6BG234000 Rh6BG524200 Rh6BG526500 Rh6CG236300 Rh6CG531400 Rh6DG515600
rosa_wichuraiana	Rw6G020030 Rw6G044650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	13
Acc36I	ACCTGC	1 cut(s)	252
Acc65I	GGTACC	1 cut(s)	312
AccB1I	GGYRCC	1 cut(s)	312
AccII	CGCG	1 cut(s)	19
AciI	CCGC	1 cut(s)	767
AclI	AACGTT	1 cut(s)	838
AclWI	GGATC	2 cut(s)	19, 788
AcsI	RAATTY	1 cut(s)	578
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	3 cut(s)	77, 590, 725
AflIII	ACRYGT	2 cut(s)	211, 411
AgsI	TTSAA	5 cut(s)	33, 124, 149, 692, 836
AhlI	ACTAGT	1 cut(s)	721
AjiI	CACGTC	1 cut(s)	369
AjnI	CCWGG	4 cut(s)	47, 308, 607, 808
AjuI	GAANNNNNNNTTGG	2 cut(s)	309, 341
AluBI	AGCT	4 cut(s)	455, 554, 715, 788
AluI	AGCT	4 cut(s)	455, 554, 715, 788
Alw26I	GTCTC	2 cut(s)	134, 496
AlwI	GGATC	2 cut(s)	19, 788
AoxI	GGCC	3 cut(s)	50, 151, 605
ApeKI	GCWGC	6 cut(s)	455, 497, 526, 554, 715, 785
ApoI	RAATTY	1 cut(s)	578
AseI	ATTAAT	1 cut(s)	423
Asp718I	GGTACC	1 cut(s)	312
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	3 cut(s)	51, 152, 728
AsuHPI	GGTGA	1 cut(s)	324
AsuNHI	GCTAGC	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	728
BanI	GGYRCC	1 cut(s)	312
BanII	GRGCYC	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	793
BbvI	GCAGC	6 cut(s)	442, 484, 513, 541, 702, 797
BciT130I	CCWGG	4 cut(s)	49, 310, 609, 810
BcoDI	GTCTC	2 cut(s)	134, 496
BcuI	ACTAGT	1 cut(s)	721
BfaI	CTAG	2 cut(s)	252, 722
BfmI	CTRYAG	1 cut(s)	762
BfuAI	ACCTGC	1 cut(s)	252
BisI	GCNGC	6 cut(s)	456, 498, 527, 555, 716, 786
BlsI	GCNGC	6 cut(s)	457, 499, 528, 556, 717, 787
Bme1390I	CCNGG	4 cut(s)	49, 310, 609, 810
Bme18I	GGWCC	1 cut(s)	728
BmgBI	CACGTC	1 cut(s)	369
BmgT120I	GGNCC	3 cut(s)	51, 152, 728
BmiI	GGNNCC	4 cut(s)	154, 314, 400, 729
BmrFI	CCNGG	4 cut(s)	49, 310, 609, 810
BmsI	GCATC	1 cut(s)	340
BmtI	GCTAGC	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	793
BpmI	CTGGAG	1 cut(s)	698
Bpu10I	CCTNAGC	1 cut(s)	257
BsaJI	CCNNGG	3 cut(s)	47, 316, 809
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 590, 725
BseBI	CCWGG	4 cut(s)	49, 310, 609, 810
BseDI	CCNNGG	3 cut(s)	47, 316, 809
BseGI	GGATG	1 cut(s)	355
BseLI	CCNNNNNNNGG	3 cut(s)	77, 590, 725
BseMII	CTCAG	3 cut(s)	105, 453, 860
BseRI	GAGGAG	4 cut(s)	150, 606, 663, 732
BseXI	GCAGC	6 cut(s)	442, 484, 513, 541, 702, 797
BsgI	GTGCAG	1 cut(s)	51
Bsh1236I	CGCG	1 cut(s)	19
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	3 cut(s)	52, 153, 607
BshNI	GGYRCC	1 cut(s)	312
BsiEI	CGRYCG	1 cut(s)	12
BslFI	GGGAC	3 cut(s)	442, 637, 741
BslI	CCNNNNNNNGG	3 cut(s)	77, 590, 725
BsmAI	GTCTC	2 cut(s)	134, 496
BsmFI	GGGAC	3 cut(s)	442, 637, 741
BsnI	GGCC	3 cut(s)	52, 153, 607
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	4 cut(s)	24, 35, 232, 793
BspACI	CCGC	1 cut(s)	767
BspANI	GGCC	3 cut(s)	52, 153, 607
BspCNI	CTCAG	3 cut(s)	104, 454, 859
BspFNI	CGCG	1 cut(s)	19
BspLI	GGNNCC	4 cut(s)	154, 314, 400, 729
BspMI	ACCTGC	1 cut(s)	252
BspOI	GCTAGC	1 cut(s)	255
BspPI	GGATC	2 cut(s)	19, 788
BspT107I	GGYRCC	1 cut(s)	312
BssECI	CCNNGG	3 cut(s)	47, 316, 809
BssMI	GATC	4 cut(s)	24, 35, 232, 793
BssT1I	CCWWGG	1 cut(s)	316
Bst2UI	CCWGG	4 cut(s)	49, 310, 609, 810
Bst4CI	ACNGT	3 cut(s)	10, 243, 362
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	4 cut(s)	91, 257, 462, 846
BstENI	CCTNNNNNAGG	1 cut(s)	588
BstF5I	GGATG	1 cut(s)	355
BstFNI	CGCG	1 cut(s)	19
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	4 cut(s)	27, 38, 235, 796
BstMAI	GTCTC	2 cut(s)	134, 496
BstMBI	GATC	4 cut(s)	24, 35, 232, 793
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	3 cut(s)	452, 773, 782
BstNI	CCWGG	4 cut(s)	49, 310, 609, 810
BstNSI	RCATGY	2 cut(s)	215, 415
BstSCI	CCNGG	4 cut(s)	47, 308, 607, 808
BstSFI	CTRYAG	1 cut(s)	762
BstUI	CGCG	1 cut(s)	19
BstV1I	GCAGC	6 cut(s)	442, 484, 513, 541, 702, 797
BstV2I	GAAGAC	1 cut(s)	793
BsuRI	GGCC	3 cut(s)	52, 153, 607
BtrI	CACGTC	1 cut(s)	369
BtsCI	GGATG	1 cut(s)	355
BveI	ACCTGC	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	253
CfoI	GCGC	1 cut(s)	21
Cfr13I	GGNCC	3 cut(s)	51, 152, 728
CsiI	ACCWGGT	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	6 cut(s)	212, 284, 291, 342, 412, 467
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	4 cut(s)	91, 257, 462, 846
DpnI	GATC	4 cut(s)	26, 37, 234, 795
DpnII	GATC	4 cut(s)	24, 35, 232, 793
DrdI	GACNNNNNNGTC	1 cut(s)	13
DseDI	GACNNNNNNGTC	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	316
Eco147I	AGGCCT	1 cut(s)	607
Eco24I	GRGCYC	1 cut(s)	120
Eco32I	GATATC	1 cut(s)	823
Eco47I	GGWCC	1 cut(s)	728
EcoNI	CCTNNNNNAGG	1 cut(s)	588
EcoO109I	RGGNCCY	3 cut(s)	51, 152, 728
EcoRII	CCWGG	4 cut(s)	47, 308, 607, 808
EcoRV	GATATC	1 cut(s)	823
EcoT14I	CCWWGG	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	6 cut(s)	215, 287, 294, 345, 415, 470
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	3 cut(s)	442, 637, 741
FatI	CATG	6 cut(s)	211, 283, 290, 341, 411, 466
Fnu4HI	GCNGC	6 cut(s)	456, 498, 527, 555, 716, 786
FokI	GGATG	1 cut(s)	362
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	6 cut(s)	456, 498, 527, 555, 716, 786
FspBI	CTAG	2 cut(s)	252, 722
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	6 cut(s)	456, 498, 527, 555, 716, 786
GsuI	CTGGAG	1 cut(s)	698
HaeIII	GGCC	3 cut(s)	52, 153, 607
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	6 cut(s)	215, 287, 294, 345, 415, 470
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HinfI	GANTC	5 cut(s)	98, 287, 338, 625, 832
HphI	GGTGA	1 cut(s)	324
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	2 cut(s)	463, 708
Hpy188III	TCNNGA	3 cut(s)	33, 356, 677
Hpy8I	GTNNAC	1 cut(s)	239
Hpy99I	CGWCG	1 cut(s)	362
HpyAV	CCTTC	3 cut(s)	130, 335, 340
HpyCH4III	ACNGT	3 cut(s)	10, 243, 362
HpyCH4IV	ACGT	2 cut(s)	368, 838
HpyCH4V	TGCA	3 cut(s)	68, 434, 446
HpyF10VI	GCNNNNNNNGC	3 cut(s)	452, 773, 782
HpyF3I	CTNAG	4 cut(s)	91, 257, 462, 846
HpySE526I	ACGT	2 cut(s)	368, 838
Hsp92II	CATG	6 cut(s)	215, 287, 294, 345, 415, 470
HspAI	GCGC	1 cut(s)	19
KpnI	GGTACC	1 cut(s)	316
Kzo9I	GATC	4 cut(s)	24, 35, 232, 793
LmnI	GCTCC	2 cut(s)	404, 639
Lsp1109I	GCAGC	6 cut(s)	442, 484, 513, 541, 702, 797
LweI	GCATC	1 cut(s)	340
MabI	ACCWGGT	1 cut(s)	308
MaeI	CTAG	2 cut(s)	252, 722
MaeII	ACGT	2 cut(s)	368, 838
MaeIII	GTNAC	6 cut(s)	174, 279, 304, 364, 648, 754
MalI	GATC	4 cut(s)	26, 37, 234, 795
MboI	GATC	4 cut(s)	24, 35, 232, 793
MboII	GAAGA	1 cut(s)	793
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	4 cut(s)	403, 447, 517, 578
MlyI	GAGTC	1 cut(s)	619
MmeI	TCCRAC	1 cut(s)	188
MseI	TTAA	1 cut(s)	423
MspA1I	CMGCKG	1 cut(s)	715
MspR9I	CCNGG	4 cut(s)	49, 310, 609, 810
MvaI	CCWGG	4 cut(s)	49, 310, 609, 810
MvnI	CGCG	1 cut(s)	19
MwoI	GCNNNNNNNGC	3 cut(s)	452, 773, 782
NdeII	GATC	4 cut(s)	24, 35, 232, 793
NheI	GCTAGC	1 cut(s)	251
NlaIII	CATG	6 cut(s)	215, 287, 294, 345, 415, 470
NlaIV	GGNNCC	4 cut(s)	154, 314, 400, 729
NmuCI	GTSAC	2 cut(s)	304, 364
NspI	RCATGY	2 cut(s)	215, 415
PceI	AGGCCT	1 cut(s)	607
PciI	ACATGT	2 cut(s)	211, 411
PfeI	GAWTC	4 cut(s)	98, 287, 338, 832
PflFI	GACNNNGTC	1 cut(s)	362
PkrI	GCNGC	6 cut(s)	457, 499, 528, 556, 717, 787
PleI	GAGTC	1 cut(s)	619
PpsI	GAGTC	1 cut(s)	619
PpuMI	RGGWCCY	1 cut(s)	728
PscI	ACATGT	2 cut(s)	211, 411
PshBI	ATTAAT	1 cut(s)	423
Psp1406I	AACGTT	1 cut(s)	838
Psp5II	RGGWCCY	1 cut(s)	728
Psp6I	CCWGG	4 cut(s)	47, 308, 607, 808
PspGI	CCWGG	4 cut(s)	47, 308, 607, 808
PspN4I	GGNNCC	4 cut(s)	154, 314, 400, 729
PspPI	GGNCC	3 cut(s)	51, 152, 728
PspPPI	RGGWCCY	1 cut(s)	728
PsyI	GACNNNGTC	1 cut(s)	362
PvuII	CAGCTG	1 cut(s)	715
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	6 cut(s)	456, 498, 527, 555, 716, 786
Sau3AI	GATC	4 cut(s)	24, 35, 232, 793
Sau96I	GGNCC	3 cut(s)	51, 152, 728
SchI	GAGTC	1 cut(s)	619
ScrFI	CCNGG	4 cut(s)	49, 310, 609, 810
SduI	GDGCHC	1 cut(s)	120
SexAI	ACCWGGT	1 cut(s)	308
SfaNI	GCATC	1 cut(s)	340
SfcI	CTRYAG	1 cut(s)	762
SinI	GGWCC	1 cut(s)	728
SpeI	ACTAGT	1 cut(s)	721
Sse9I	AATT	4 cut(s)	403, 447, 517, 578
SseBI	AGGCCT	1 cut(s)	607
SsiI	CCGC	1 cut(s)	767
SspMI	CTAG	2 cut(s)	252, 722
StuI	AGGCCT	1 cut(s)	607
StyD4I	CCNGG	4 cut(s)	47, 308, 607, 808
StyI	CCWWGG	1 cut(s)	316
TaaI	ACNGT	3 cut(s)	10, 243, 362
TaiI	ACGT	2 cut(s)	371, 841
TaqI	TCGA	2 cut(s)	357, 628
TasI	AATT	4 cut(s)	403, 447, 517, 578
TfiI	GAWTC	4 cut(s)	98, 287, 338, 832
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TseFI	GTSAC	2 cut(s)	304, 364
TseI	GCWGC	6 cut(s)	455, 497, 526, 554, 715, 785
Tsp45I	GTSAC	2 cut(s)	304, 364
TspDTI	ATGAA	2 cut(s)	279, 330
Tth111I	GACNNNGTC	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	728
VspI	ATTAAT	1 cut(s)	423
XagI	CCTNNNNNAGG	1 cut(s)	588
XapI	RAATTY	1 cut(s)	578
XceI	RCATGY	2 cut(s)	215, 415
XspI	CTAG	2 cut(s)	252, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.