Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003031.1

Orthogroup ID

OG0001714

Physical Location & Seq

Genomic Coordinates Reverse (-)

91723 .. 94763

Gene Structure 3041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003031.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atgatgaagaagctttttcggattggtgtgggaggagctggtacatcatccccagaaaagtcacgttcttttctctctcgaaaggctcgaaatccatggtcggagatggagatccgagtctctgttaaactccgaacctcagccagccacgagccagagaaagaggaatcagcctctctgagcaaaaaggcagcgaagaaagaagaggctaagctcgagaagctccgtcgcaaccaagagcaagaagcggcaccgccccagctcgcgctcagtctgccaaaccagaggacccgctcgccgctaactacggtgaggtgctgctcattcagcattgaaggaccagaaggttctgatacgcggcaatgcacagacgatccgagccttctggtcttagggaagaacatggcgtttaattgtggaaagaaacggaaggagttcaaggttcagtgcgtcgtgacggttcagccggagagtgtgagccgtcagatggaggatgctggtgtcgaagttgatcctatgggggacctaaatactgaagcagagaggaagttgggccaaatagtttcggagaaatacggcactgagttctacatacttcaccgctatccgttggctatgaggcctttctataccttgccttgtgatgataatcctgaatttagtaattcttttgacgtctccattcgaggtgaggagattatatcaggagcacaacgtatccatgtaccagaattgttggccgaacgtgctgaatatcgaagcatgtggaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006422 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045202 GO:0046483 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0098542 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2 tRNA_anti-codon

Protein Analysis

257

Amino Acids

28.99

Weight (kDa)

8.47

Isoelectric Point (pI)

51.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26870 AT4G31180 AT4G31180
fragaria_vesca	FvH4_2g15870 FvH4_2g15910 FvH4_2g30550
malus_domestica	MD08G1134400.v1.1 MD12G1153800.v1.1 MD14G1143300.v1.1 MD15G1113400.v1.1
prunus_persica	Prupe.1G463800_v2.0.a1 Prupe.4G141600_v2.0.a1 Prupe.8G055000_v2.0.a1
pyrus_communis	pycom08g11340 pycom15g10170 pycom16g11710
rosa_chinensis	RchiOBHm_Chr5g0032141 RchiOBHm_Chr5g0032161 RchiOBHm_Chr6g0278871 RchiOBHm_Chr6g0312531
rosa_laevigata	RLG00000010321 RLG00000033368
rosa_multiflora	Rmu_co8427103.1_g000001 Rmu_sc0003031.1_g000023 Rmu_sc0005375.1_g000002 Rmu_sc0005375.1_g000011 Rmu_sc0008363.1_g000011 Rmu_sc0043080.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048240 Rroxscaffold_1G00048270 Rroxscaffold_7G00156770
rosa_rugosa	Rorug06G0119800 Rorug06G0120000 Rorug06G0123400 Rorug06G0396100 Rorug06G0396200
rosa_samantha	Rh5DG228900 Rh6AG228300 Rh6AG513500 Rh6BG233900 Rh6BG234000 Rh6BG524200 Rh6BG526500 Rh6CG236300 Rh6CG531400 Rh6DG515600
rosa_wichuraiana	Rw6G020030 Rw6G044650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	678
AccB1I	GGYRCC	1 cut(s)	250
AccBSI	CCGCTC	1 cut(s)	294
AccII	CGCG	2 cut(s)	266, 358
AciI	CCGC	6 cut(s)	248, 254, 292, 299, 358, 601
AclWI	GGATC	3 cut(s)	106, 368, 506
AcoI	YGGCCR	1 cut(s)	738
AcsI	RAATTY	1 cut(s)	656
AcuI	CTGAAG	1 cut(s)	555
AcyI	GRCGYC	1 cut(s)	675
AfaI	GTAC	2 cut(s)	43, 726
AfiI	CCNNNNNNNGG	1 cut(s)	487
AgsI	TTSAA	2 cut(s)	335, 439
AluBI	AGCT	5 cut(s)	13, 38, 214, 223, 262
AluI	AGCT	5 cut(s)	13, 38, 214, 223, 262
Alw21I	GWGCWC	1 cut(s)	712
Alw26I	GTCTC	2 cut(s)	124, 682
AlwI	GGATC	3 cut(s)	106, 368, 506
Ama87I	CYCGRG	1 cut(s)	215
AoxI	GGCC	3 cut(s)	553, 620, 738
ApeKI	GCWGC	2 cut(s)	191, 318
ApoI	RAATTY	1 cut(s)	656
Asp700I	GAANNNNTTC	1 cut(s)	434
AspLEI	GCGC	1 cut(s)	268
AspS9I	GGNCC	4 cut(s)	288, 338, 523, 553
AsuHPI	GGTGA	3 cut(s)	322, 590, 701
AvaI	CYCGRG	1 cut(s)	215
AvaII	GGWCC	3 cut(s)	288, 338, 523
BanI	GGYRCC	1 cut(s)	250
BauI	CACGAG	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	712
BbvCI	CCTCAGC	1 cut(s)	139
BbvI	GCAGC	2 cut(s)	203, 305
BccI	CCATC	2 cut(s)	100, 481
BceAI	ACGGC	2 cut(s)	465, 592
BciVI	GTATCC	1 cut(s)	728
BcoDI	GTCTC	2 cut(s)	124, 682
BfuI	GTATCC	1 cut(s)	728
BisI	GCNGC	5 cut(s)	192, 249, 299, 319, 359
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	5 cut(s)	193, 250, 300, 320, 360
Bme18I	GGWCC	3 cut(s)	288, 338, 523
BmeT110I	CYCGRG	1 cut(s)	215
BmgT120I	GGNCC	4 cut(s)	288, 338, 523, 553
BmiI	GGNNCC	3 cut(s)	252, 290, 524
BmsI	GCATC	1 cut(s)	484
Bpu10I	CCTNAGC	1 cut(s)	139
Bpu1102I	GCTNAGC	1 cut(s)	210
BsaBI	GATNNNNATC	2 cut(s)	110, 648
BsaHI	GRCGYC	1 cut(s)	675
BsaJI	CCNNGG	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	1 cut(s)	487
Bse3DI	GCAATG	1 cut(s)	368
Bse8I	GATNNNNATC	2 cut(s)	110, 648
BseDI	CCNNGG	1 cut(s)	95
BseGI	GGATG	2 cut(s)	47, 499
BseJI	GATNNNNATC	2 cut(s)	110, 648
BseLI	CCNNNNNNNGG	1 cut(s)	487
BseMI	GCAATG	1 cut(s)	368
BseMII	CTCAG	4 cut(s)	153, 170, 283, 573
BseRI	GAGGAG	2 cut(s)	48, 707
BseXI	GCAGC	2 cut(s)	203, 305
BseYI	CCCAGC	1 cut(s)	258
Bsh1236I	CGCG	2 cut(s)	266, 358
BshFI	GGCC	3 cut(s)	555, 622, 740
BshNI	GGYRCC	1 cut(s)	250
BsiHKAI	GWGCWC	1 cut(s)	712
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	467
BslFI	GGGAC	1 cut(s)	536
BslI	CCNNNNNNNGG	1 cut(s)	487
BsmAI	GTCTC	2 cut(s)	124, 682
BsmBI	CGTCTC	1 cut(s)	682
BsmFI	GGGAC	1 cut(s)	536
BsnI	GGCC	3 cut(s)	555, 622, 740
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	712
Bsp143I	GATC	3 cut(s)	111, 373, 511
Bsp1720I	GCTNAGC	1 cut(s)	210
Bsp19I	CCATGG	1 cut(s)	95
BspACI	CCGC	6 cut(s)	248, 254, 292, 299, 358, 601
BspANI	GGCC	3 cut(s)	555, 622, 740
BspCNI	CTCAG	4 cut(s)	152, 171, 282, 574
BspFNI	CGCG	2 cut(s)	266, 358
BspLI	GGNNCC	3 cut(s)	252, 290, 524
BspPI	GGATC	3 cut(s)	106, 368, 506
BspT107I	GGYRCC	1 cut(s)	250
BsrBI	CCGCTC	1 cut(s)	294
BsrDI	GCAATG	1 cut(s)	368
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	3 cut(s)	111, 373, 511
BssNI	GRCGYC	1 cut(s)	675
BssSI	CACGAG	1 cut(s)	149
BssT1I	CCWWGG	1 cut(s)	95
Bst2BI	CACGAG	1 cut(s)	149
Bst4CI	ACNGT	2 cut(s)	310, 460
Bst6I	CTCTTC	1 cut(s)	198
BstACI	GRCGYC	1 cut(s)	675
BstC8I	GCNNGC	3 cut(s)	145, 264, 296
BstDEI	CTNAG	6 cut(s)	139, 179, 210, 269, 391, 582
BstDSI	CCRYGG	1 cut(s)	95
BstF5I	GGATG	2 cut(s)	47, 499
BstFNI	CGCG	2 cut(s)	266, 358
BstHHI	GCGC	1 cut(s)	268
BstKTI	GATC	3 cut(s)	114, 376, 514
BstMAI	GTCTC	2 cut(s)	124, 682
BstMBI	GATC	3 cut(s)	111, 373, 511
BstMWI	GCNNNNNNNGC	4 cut(s)	220, 274, 327, 746
BstNSI	RCATGY	1 cut(s)	766
BstUI	CGCG	2 cut(s)	266, 358
BstV1I	GCAGC	2 cut(s)	203, 305
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
BsuI	GTATCC	1 cut(s)	728
BsuRI	GGCC	3 cut(s)	555, 622, 740
BtgI	CCRYGG	1 cut(s)	95
BtsCI	GGATG	2 cut(s)	47, 499
BtsIMutI	CAGTG	2 cut(s)	452, 579
Cac8I	GCNNGC	3 cut(s)	145, 264, 296
CfoI	GCGC	1 cut(s)	268
Cfr13I	GGNCC	4 cut(s)	288, 338, 523, 553
CseI	GACGC	1 cut(s)	439
Csp6I	GTAC	2 cut(s)	42, 725
CviAII	CATG	4 cut(s)	96, 403, 722, 763
CviQI	GTAC	2 cut(s)	42, 725
DdeI	CTNAG	6 cut(s)	139, 179, 210, 269, 391, 582
DpnI	GATC	3 cut(s)	113, 375, 513
DpnII	GATC	3 cut(s)	111, 373, 511
EaeI	YGGCCR	1 cut(s)	738
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	95
Eco147I	AGGCCT	1 cut(s)	622
Eco47I	GGWCC	3 cut(s)	288, 338, 523
Eco57I	CTGAAG	1 cut(s)	555
Eco88I	CYCGRG	1 cut(s)	215
EcoO109I	RGGNCCY	2 cut(s)	288, 523
EcoT14I	CCWWGG	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	95
Esp3I	CGTCTC	1 cut(s)	682
FaeI	CATG	4 cut(s)	99, 406, 725, 766
FaiI	YATR	9 cut(s)	97, 404, 518, 593, 617, 630, 701, 723, 764
FaqI	GGGAC	1 cut(s)	536
FatI	CATG	4 cut(s)	95, 402, 721, 762
FauI	CCCGC	1 cut(s)	299
Fnu4HI	GCNGC	5 cut(s)	192, 249, 299, 319, 359
FokI	GGATG	2 cut(s)	34, 506
Fsp4HI	GCNGC	5 cut(s)	192, 249, 299, 319, 359
GlaI	GCGC	1 cut(s)	267
GluI	GCNGC	5 cut(s)	192, 249, 299, 319, 359
GsaI	CCCAGC	1 cut(s)	262
HaeIII	GGCC	3 cut(s)	555, 622, 740
HapII	CCGG	1 cut(s)	467
HgaI	GACGC	1 cut(s)	439
HhaI	GCGC	1 cut(s)	268
Hin1I	GRCGYC	1 cut(s)	675
Hin1II	CATG	4 cut(s)	99, 406, 725, 766
Hin6I	GCGC	1 cut(s)	266
HinP1I	GCGC	1 cut(s)	266
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	2 cut(s)	117, 167
HpaII	CCGG	1 cut(s)	467
HphI	GGTGA	3 cut(s)	322, 590, 701
Hpy188I	TCNGA	9 cut(s)	21, 103, 116, 134, 180, 352, 378, 486, 568
Hpy188III	TCNNGA	5 cut(s)	78, 217, 454, 653, 705
Hpy99I	CGWCG	2 cut(s)	231, 455
HpyAV	CCTTC	4 cut(s)	329, 338, 392, 424
HpyCH4III	ACNGT	2 cut(s)	310, 460
HpyCH4IV	ACGT	4 cut(s)	64, 675, 715, 745
HpyCH4V	TGCA	1 cut(s)	366
HpyF10VI	GCNNNNNNNGC	4 cut(s)	220, 274, 327, 746
HpyF3I	CTNAG	6 cut(s)	139, 179, 210, 269, 391, 582
HpySE526I	ACGT	4 cut(s)	64, 675, 715, 745
Hsp92I	GRCGYC	1 cut(s)	675
Hsp92II	CATG	4 cut(s)	99, 406, 725, 766
HspAI	GCGC	1 cut(s)	266
Kzo9I	GATC	3 cut(s)	111, 373, 511
LmnI	GCTCC	3 cut(s)	35, 228, 707
Lsp1109I	GCAGC	2 cut(s)	203, 305
LweI	GCATC	1 cut(s)	484
MaeII	ACGT	4 cut(s)	64, 675, 715, 745
MaeIII	GTNAC	2 cut(s)	60, 454
MalI	GATC	3 cut(s)	113, 375, 513
MbiI	CCGCTC	1 cut(s)	294
MboI	GATC	3 cut(s)	111, 373, 511
MboII	GAAGA	4 cut(s)	19, 208, 215, 409
MflI	RGATCY	1 cut(s)	111
MhlI	GDGCHC	1 cut(s)	712
MluCI	AATT	5 cut(s)	412, 656, 664, 731, 769
MlyI	GAGTC	1 cut(s)	126
MmeI	TCCRAC	1 cut(s)	81
MroXI	GAANNNNTTC	1 cut(s)	434
MseI	TTAA	2 cut(s)	126, 411
MspI	CCGG	1 cut(s)	467
MvnI	CGCG	2 cut(s)	266, 358
MwoI	GCNNNNNNNGC	4 cut(s)	220, 274, 327, 746
NcoI	CCATGG	1 cut(s)	95
NdeII	GATC	3 cut(s)	111, 373, 511
NlaIII	CATG	4 cut(s)	99, 406, 725, 766
NlaIV	GGNNCC	3 cut(s)	252, 290, 524
NmuCI	GTSAC	2 cut(s)	60, 454
NspI	RCATGY	1 cut(s)	766
PaeR7I	CTCGAG	1 cut(s)	215
PceI	AGGCCT	1 cut(s)	622
PcsI	WCGNNNNNNNCGW	1 cut(s)	85
PdmI	GAANNNNTTC	1 cut(s)	434
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	5 cut(s)	193, 250, 300, 320, 360
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PpuMI	RGGWCCY	2 cut(s)	288, 523
Psp5II	RGGWCCY	2 cut(s)	288, 523
PspFI	CCCAGC	1 cut(s)	258
PspN4I	GGNNCC	3 cut(s)	252, 290, 524
PspPI	GGNCC	4 cut(s)	288, 338, 523, 553
PspPPI	RGGWCCY	2 cut(s)	288, 523
PsuI	RGATCY	1 cut(s)	111
RsaI	GTAC	2 cut(s)	43, 726
RsaNI	GTAC	2 cut(s)	42, 725
SaqAI	TTAA	2 cut(s)	126, 411
SatI	GCNGC	5 cut(s)	192, 249, 299, 319, 359
Sau3AI	GATC	3 cut(s)	111, 373, 511
Sau96I	GGNCC	4 cut(s)	288, 338, 523, 553
SchI	GAGTC	1 cut(s)	126
SduI	GDGCHC	1 cut(s)	712
SfaNI	GCATC	1 cut(s)	484
Sfr274I	CTCGAG	1 cut(s)	215
SinI	GGWCC	3 cut(s)	288, 338, 523
SlaI	CTCGAG	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	5 cut(s)	412, 656, 664, 731, 769
SseBI	AGGCCT	1 cut(s)	622
SsiI	CCGC	6 cut(s)	248, 254, 292, 299, 358, 601
StuI	AGGCCT	1 cut(s)	622
StyI	CCWWGG	1 cut(s)	95
TaaI	ACNGT	2 cut(s)	310, 460
TaiI	ACGT	4 cut(s)	67, 678, 718, 748
TaqI	TCGA	6 cut(s)	79, 88, 216, 504, 685, 757
TasI	AATT	5 cut(s)	412, 656, 664, 731, 769
TauI	GCSGC	3 cut(s)	251, 301, 361
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	2 cut(s)	126, 411
Tru9I	TTAA	2 cut(s)	126, 411
TscAI	CASTG	2 cut(s)	452, 586
TseFI	GTSAC	2 cut(s)	60, 454
TseI	GCWGC	2 cut(s)	191, 318
Tsp45I	GTSAC	2 cut(s)	60, 454
TspDTI	ATGAA	1 cut(s)	20
TspGWI	ACGGA	3 cut(s)	215, 442, 597
TspRI	CASTG	2 cut(s)	452, 586
VpaK11BI	GGWCC	3 cut(s)	288, 338, 523
XapI	RAATTY	1 cut(s)	656
XceI	RCATGY	1 cut(s)	766
XhoI	CTCGAG	1 cut(s)	215
XmnI	GAANNNNTTC	1 cut(s)	434
ZraI	GACGTC	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.