RchiOBHm_Chr6g0278871

aspartate--tRNA ligase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
41947102 .. 41948286
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25014

Sequence Viewer

Length: 1185 bp
ATGGTGAAGTACGCGTCGAAGTTGAGCCGCGAGTCGATTATTGACATTGAAGGGATTGTGTCTAAACCTGATATGGCAATTGCAGGCGCTTCACAGCAGGTGGATGTGCAAGTTAGAAAGTTGTACTGTATAAGTAGGGCTGCTGTTTTACCTATTGAAATTGAGAATGCTGCTCGAAGTGAAAAACCTAATGAGGATGGACAGAATACTCGCTTGAATAACCGAGTACTTGACTTGCGAACAGCGGCCAACCTGGGGATTTTCCGAATCCAGAGTCAAGTTGGAACTATCTTCAGGCAGTTCTTGCTGTCCGAAGGGTTTGTTGAAATCCATACACCAAAACTGATCGCTGGTTCAAGTGAAGGTGGGGCTTCGGTGTTTAAACTAGACTACGTGAAGGGGCAACCTGCCTGCCTTGCCCAGTCACCGCAGCTCCACAAGCAGATGTCCATCTGTGCTGACTTTGGTCGTGTTTTCGAGGTTGGTTCTGTTTTCAGAGCTGAGAACTCTGATACACATAGGCATCTATGTGAGTTCACTGGTCTCGATATTGAGATGGAGATTGAGTGGAGCTATTGTGAGGTTATGGATATTGTAAACAGTTTGTTTGTCAATATGTTTGACTATTTGAACAAAAATTGTGAGAAGGAACTTGAAGCTGTACGAAGGCAGTATCCCTTCGAACCATTAAAGTACTTGCCTGAGACTCTACGTCTCACCTTCGCGGAAGGTGTTCAAATGCTAAAGGATGCCGGTGTGGAAGTTGATCCTATGGGGGACTTGGATACTAAAAAAGAGAGGAAGTTGGGCCAAATAGTTTTGGAGAAATATGGCACTGAGTTCTACATACTTCACCGCTATCCGTTGGCTGTGAGGCCTTTCTATACCATGCCTTGCGACGATAATCCTGAATACAGCAATTCGTTTGACGTCTTCATTCGAGGTGAGGAGATTATATCAGGGGCACAACGTATCCATGTACCAGAATTATTGGTCGAACGTGCTTCAGCACGTGGAATTGAAGTAGAGACAATATCAACATATATTGATTCCTTCAGATATGGTGCACCTCCCCATGGTGGATTTGGAGTAGGGCTGGAGCGTGTTGTGATGCTCTTCTGTGGTTTGAATAACATCCACAAAACATCTTTATTCCCGCGTGATCCAGACCGGCTAGCGCCTTGA

Protein Analysis

394

Amino Acids

44.46

Weight (kDa)

5.37

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_2 PF00152 68 - 388 3.6e-78 tRNA synthetases class II (D, K and N)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 88
AatII GACGTC 1 cut(s) 933
Acc36I ACCTGC 2 cut(s) 88, 415
AccII CGCG 4 cut(s) 14, 30, 725, 1159
AciI CCGC 6 cut(s) 28, 245, 428, 725, 856, 1157
AclWI GGATC 2 cut(s) 761, 1157
AcoI YGGCCR 1 cut(s) 246
AcuI CTGAAG 3 cut(s) 277, 990, 1039
AcvI CACGTG 1 cut(s) 1013
AcyI GRCGYC 1 cut(s) 930
AfaI GTAC 6 cut(s) 11, 125, 228, 663, 695, 981
AfiI CCNNNNNNNGG 3 cut(s) 255, 1076, 1079
AflIII ACRYGT 1 cut(s) 12
AhdI GACNNNNNGTC 1 cut(s) 711
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 4 cut(s) 433, 500, 573, 659
AluI AGCT 4 cut(s) 433, 500, 573, 659
Alw21I GWGCWC 1 cut(s) 1069
Alw26I GTCTC 4 cut(s) 548, 698, 719, 1022
Alw44I GTGCAC 1 cut(s) 1065
AlwI GGATC 2 cut(s) 761, 1157
AoxI GGCC 3 cut(s) 246, 808, 875
ApaLI GTGCAC 1 cut(s) 1065
ApeKI GCWGC 3 cut(s) 140, 170, 430
ArsI GACNNNNNNTTYG 2 cut(s) 259, 291
Asp700I GAANNNNTTC 1 cut(s) 732
AspLEI GCGC 2 cut(s) 89, 1180
AspS9I GGNCC 1 cut(s) 808
AsuHPI GGTGA 5 cut(s) 16, 417, 709, 845, 956
AsuII TTCGAA 1 cut(s) 681
AsuNHI GCTAGC 1 cut(s) 1174
BaeGI GKGCMC 2 cut(s) 967, 1069
BbrPI CACGTG 1 cut(s) 1013
BbsI GAAGAC 1 cut(s) 925
Bbv12I GWGCWC 1 cut(s) 1069
BbvI GCAGC 3 cut(s) 127, 157, 442
BccI CCATC 3 cut(s) 191, 458, 550
BciT130I CCWGG 1 cut(s) 254
BciVI GTATCC 3 cut(s) 684, 778, 983
BcoDI GTCTC 4 cut(s) 548, 698, 719, 1022
BfaI CTAG 2 cut(s) 386, 1175
BfoI RGCGCY 2 cut(s) 90, 1181
BfuAI ACCTGC 2 cut(s) 88, 415
BfuI GTATCC 3 cut(s) 684, 778, 983
BisI GCNGC 5 cut(s) 28, 141, 171, 246, 431
BlsI GCNGC 5 cut(s) 29, 142, 172, 247, 432
BmcAI AGTACT 2 cut(s) 228, 695
Bme1390I CCNGG 1 cut(s) 254
BmeRI GACNNNNNGTC 1 cut(s) 711
BmgT120I GGNCC 1 cut(s) 808
BmrFI CCNGG 1 cut(s) 254
BmrI ACTGGG 1 cut(s) 415
BmsI GCATC 3 cut(s) 532, 739, 1101
BmtI GCTAGC 1 cut(s) 1178
BmuI ACTGGG 1 cut(s) 415
BoxI GACNNNNGTC 1 cut(s) 465
BpiI GAAGAC 1 cut(s) 925
BpmI CTGGAG 1 cut(s) 1118
Bpu14I TTCGAA 1 cut(s) 681
BsaAI YACGTR 2 cut(s) 394, 1013
BsaBI GATNNNNATC 1 cut(s) 449
BsaHI GRCGYC 1 cut(s) 930
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 2 cut(s) 253, 1075
BsaXI ACNNNNNCTCC 6 cut(s) 417, 447, 551, 562, 581, 592
Bsc4I CCNNNNNNNGG 3 cut(s) 255, 1076, 1079
Bse118I RCCGGY 2 cut(s) 752, 1170
Bse1I ACTGG 2 cut(s) 421, 544
Bse8I GATNNNNATC 1 cut(s) 449
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 2 cut(s) 253, 1075
BseGI GGATG 4 cut(s) 109, 202, 754, 1134
BseJI GATNNNNATC 1 cut(s) 449
BseLI CCNNNNNNNGG 3 cut(s) 255, 1076, 1079
BseMII CTCAG 3 cut(s) 492, 693, 828
BseNI ACTGG 2 cut(s) 421, 544
BseRI GAGGAG 1 cut(s) 962
BseSI GKGCMC 2 cut(s) 967, 1069
BseXI GCAGC 3 cut(s) 127, 157, 442
Bsh1236I CGCG 4 cut(s) 14, 30, 725, 1159
BshFI GGCC 3 cut(s) 248, 810, 877
BsiHKAI GWGCWC 1 cut(s) 1069
BsiSI CCGG 2 cut(s) 753, 1171
BslFI GGGAC 1 cut(s) 791
BslI CCNNNNNNNGG 3 cut(s) 255, 1076, 1079
BsmAI GTCTC 4 cut(s) 548, 698, 719, 1022
BsmBI CGTCTC 1 cut(s) 719
BsmFI GGGAC 1 cut(s) 791
BsmI GAATGC 1 cut(s) 172
BsnI GGCC 3 cut(s) 248, 810, 877
Bso31I GGTCTC 1 cut(s) 548
Bsp119I TTCGAA 1 cut(s) 681
Bsp1286I GDGCHC 2 cut(s) 967, 1069
Bsp143I GATC 3 cut(s) 345, 766, 1162
Bsp19I CCATGG 1 cut(s) 1075
BspACI CCGC 6 cut(s) 28, 245, 428, 725, 856, 1157
BspANI GGCC 3 cut(s) 248, 810, 877
BspCNI CTCAG 3 cut(s) 493, 694, 829
BspFNI CGCG 4 cut(s) 14, 30, 725, 1159
BspMI ACCTGC 2 cut(s) 88, 415
BspOI GCTAGC 1 cut(s) 1178
BspPI GGATC 2 cut(s) 761, 1157
BspQI GCTCTTC 1 cut(s) 1121
BspT104I TTCGAA 1 cut(s) 681
BspTNI GGTCTC 1 cut(s) 548
BsrFI RCCGGY 2 cut(s) 752, 1170
BsrI ACTGG 2 cut(s) 421, 544
BssAI RCCGGY 2 cut(s) 752, 1170
BssECI CCNNGG 2 cut(s) 253, 1075
BssMI GATC 3 cut(s) 345, 766, 1162
BssNI GRCGYC 1 cut(s) 930
BssT1I CCWWGG 1 cut(s) 1075
Bst2UI CCWGG 1 cut(s) 254
Bst4CI ACNGT 2 cut(s) 128, 602
Bst6I CTCTTC 1 cut(s) 1121
BstACI GRCGYC 1 cut(s) 930
BstAPI GCANNNNNTGC 1 cut(s) 304
BstBAI YACGTR 2 cut(s) 394, 1013
BstBI TTCGAA 1 cut(s) 681
BstC8I GCNNGC 3 cut(s) 85, 412, 1176
BstDEI CTNAG 3 cut(s) 501, 702, 837
BstDSI CCRYGG 1 cut(s) 1075
BstF5I GGATG 4 cut(s) 109, 202, 754, 1134
BstFNI CGCG 4 cut(s) 14, 30, 725, 1159
BstH2I RGCGCY 2 cut(s) 90, 1181
BstHHI GCGC 2 cut(s) 89, 1180
BstKTI GATC 3 cut(s) 348, 769, 1165
BstMAI GTCTC 4 cut(s) 548, 698, 719, 1022
BstMBI GATC 3 cut(s) 345, 766, 1162
BstMWI GCNNNNNNNGC 3 cut(s) 304, 416, 439
BstNI CCWGG 1 cut(s) 254
BstPAI GACNNNNGTC 1 cut(s) 465
BstSCI CCNGG 1 cut(s) 252
BstSLI GKGCMC 2 cut(s) 967, 1069
BstUI CGCG 4 cut(s) 14, 30, 725, 1159
BstV1I GCAGC 3 cut(s) 127, 157, 442
BstV2I GAAGAC 1 cut(s) 925
BsuI GTATCC 3 cut(s) 684, 778, 983
BsuRI GGCC 3 cut(s) 248, 810, 877
BtgI CCRYGG 1 cut(s) 1075
BtsCI GGATG 4 cut(s) 109, 202, 754, 1134
BtsIMutI CAGTG 2 cut(s) 537, 834
BveI ACCTGC 2 cut(s) 88, 415
Cac8I GCNNGC 3 cut(s) 85, 412, 1176
CfoI GCGC 2 cut(s) 89, 1180
Cfr10I RCCGGY 2 cut(s) 752, 1170
Cfr13I GGNCC 1 cut(s) 808
CseI GACGC 1 cut(s) 3
Csp6I GTAC 6 cut(s) 10, 124, 227, 662, 694, 980
CviAII CATG 3 cut(s) 889, 977, 1076
CviQI GTAC 6 cut(s) 10, 124, 227, 662, 694, 980
DdeI CTNAG 3 cut(s) 501, 702, 837
DpnI GATC 3 cut(s) 347, 768, 1164
DpnII GATC 3 cut(s) 345, 766, 1162
DraI TTTAAA 1 cut(s) 382
DriI GACNNNNNGTC 1 cut(s) 711
EaeI YGGCCR 1 cut(s) 246
Eam1104I CTCTTC 1 cut(s) 1121
Eam1105I GACNNNNNGTC 1 cut(s) 711
EarI CTCTTC 1 cut(s) 1121
Eco130I CCWWGG 1 cut(s) 1075
Eco147I AGGCCT 1 cut(s) 877
Eco31I GGTCTC 1 cut(s) 548
Eco57I CTGAAG 3 cut(s) 277, 990, 1039
Eco72I CACGTG 1 cut(s) 1013
EcoRII CCWGG 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 1075
ErhI CCWWGG 1 cut(s) 1075
Esp3I CGTCTC 1 cut(s) 719
FaeI CATG 3 cut(s) 892, 980, 1079
FaqI GGGAC 1 cut(s) 791
FatI CATG 3 cut(s) 888, 976, 1075
FauI CCCGC 1 cut(s) 1164
Fnu4HI GCNGC 5 cut(s) 28, 141, 171, 246, 431
FokI GGATG 4 cut(s) 116, 209, 761, 1121
Fsp4HI GCNGC 5 cut(s) 28, 141, 171, 246, 431
FspBI CTAG 2 cut(s) 386, 1175
GlaI GCGC 2 cut(s) 88, 1179
GluI GCNGC 5 cut(s) 28, 141, 171, 246, 431
GsuI CTGGAG 1 cut(s) 1118
HaeII RGCGCY 2 cut(s) 90, 1181
HaeIII GGCC 3 cut(s) 248, 810, 877
HapII CCGG 2 cut(s) 753, 1171
HgaI GACGC 1 cut(s) 3
HhaI GCGC 2 cut(s) 89, 1180
Hin1I GRCGYC 1 cut(s) 930
Hin1II CATG 3 cut(s) 892, 980, 1079
Hin6I GCGC 2 cut(s) 87, 1178
HinP1I GCGC 2 cut(s) 87, 1178
HinfI GANTC 5 cut(s) 32, 267, 274, 706, 1049
HpaII CCGG 2 cut(s) 753, 1171
HphI GGTGA 5 cut(s) 16, 417, 709, 845, 956
Hpy166II GTNNAC 3 cut(s) 537, 598, 1067
Hpy188I TCNGA 5 cut(s) 266, 313, 497, 511, 1058
Hpy188III TCNNGA 4 cut(s) 271, 545, 908, 1166
Hpy8I GTNNAC 3 cut(s) 537, 598, 1067
Hpy99I CGWCG 2 cut(s) 19, 902
HpyCH4III ACNGT 2 cut(s) 128, 602
HpyCH4IV ACGT 6 cut(s) 393, 712, 930, 970, 1000, 1012
HpyCH4V TGCA 3 cut(s) 83, 109, 1067
HpyF10VI GCNNNNNNNGC 3 cut(s) 304, 416, 439
HpyF3I CTNAG 3 cut(s) 501, 702, 837
HpySE526I ACGT 6 cut(s) 393, 712, 930, 970, 1000, 1012
Hsp92I GRCGYC 1 cut(s) 930
Hsp92II CATG 3 cut(s) 892, 980, 1079
HspAI GCGC 2 cut(s) 87, 1178
Kzo9I GATC 3 cut(s) 345, 766, 1162
LguI GCTCTTC 1 cut(s) 1121
LmnI GCTCC 3 cut(s) 438, 570, 1099
Lsp1109I GCAGC 3 cut(s) 127, 157, 442
LweI GCATC 3 cut(s) 532, 739, 1101
MaeI CTAG 2 cut(s) 386, 1175
MaeII ACGT 6 cut(s) 393, 712, 930, 970, 1000, 1012
MaeIII GTNAC 1 cut(s) 423
MalI GATC 3 cut(s) 347, 768, 1164
MboI GATC 3 cut(s) 345, 766, 1162
MboII GAAGA 3 cut(s) 283, 925, 1108
MfeI CAATTG 1 cut(s) 78
MhlI GDGCHC 2 cut(s) 967, 1069
MluCI AATT 6 cut(s) 78, 159, 637, 919, 986, 1017
MluI ACGCGT 1 cut(s) 12
MlyI GAGTC 3 cut(s) 41, 283, 700
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 8 cut(s) 187, 472, 574, 792, 867, 935, 940, 1080
MroXI GAANNNNTTC 1 cut(s) 732
MseI TTAA 2 cut(s) 381, 689
MslI CAYNNNNRTG 1 cut(s) 528
MspA1I CMGCKG 1 cut(s) 245
MspI CCGG 2 cut(s) 753, 1171
MspR9I CCNGG 1 cut(s) 254
MssI GTTTAAAC 1 cut(s) 382
MunI CAATTG 1 cut(s) 78
Mva1269I GAATGC 1 cut(s) 172
MvaI CCWGG 1 cut(s) 254
MvnI CGCG 4 cut(s) 14, 30, 725, 1159
MwoI GCNNNNNNNGC 3 cut(s) 304, 416, 439
NcoI CCATGG 1 cut(s) 1075
NdeII GATC 3 cut(s) 345, 766, 1162
NheI GCTAGC 1 cut(s) 1174
NlaIII CATG 3 cut(s) 892, 980, 1079
NmuCI GTSAC 1 cut(s) 423
NspV TTCGAA 1 cut(s) 681
PaqCI CACCTGC 1 cut(s) 88
PceI AGGCCT 1 cut(s) 877
PciSI GCTCTTC 1 cut(s) 1121
PctI GAATGC 1 cut(s) 172
PdmI GAANNNNTTC 1 cut(s) 732
PfeI GAWTC 2 cut(s) 267, 1049
PkrI GCNGC 5 cut(s) 29, 142, 172, 247, 432
PleI GAGTC 3 cut(s) 40, 282, 700
PmaCI CACGTG 1 cut(s) 1013
PmeI GTTTAAAC 1 cut(s) 382
PmlI CACGTG 1 cut(s) 1013
PpsI GAGTC 3 cut(s) 40, 282, 700
Ppu21I YACGTR 2 cut(s) 394, 1013
PshAI GACNNNNGTC 1 cut(s) 465
Psp6I CCWGG 1 cut(s) 252
PspCI CACGTG 1 cut(s) 1013
PspGI CCWGG 1 cut(s) 252
PspPI GGNCC 1 cut(s) 808
RsaI GTAC 6 cut(s) 11, 125, 228, 663, 695, 981
RsaNI GTAC 6 cut(s) 10, 124, 227, 662, 694, 980
RseI CAYNNNNRTG 1 cut(s) 528
SapI GCTCTTC 1 cut(s) 1121
SaqAI TTAA 2 cut(s) 381, 689
SatI GCNGC 5 cut(s) 28, 141, 171, 246, 431
Sau3AI GATC 3 cut(s) 345, 766, 1162
Sau96I GGNCC 1 cut(s) 808
ScaI AGTACT 2 cut(s) 228, 695
SchI GAGTC 3 cut(s) 41, 283, 700
ScrFI CCNGG 1 cut(s) 254
SduI GDGCHC 2 cut(s) 967, 1069
SfaNI GCATC 3 cut(s) 532, 739, 1101
SfuI TTCGAA 1 cut(s) 681
SmiMI CAYNNNNRTG 1 cut(s) 528
Sse9I AATT 6 cut(s) 78, 159, 637, 919, 986, 1017
SseBI AGGCCT 1 cut(s) 877
SsiI CCGC 6 cut(s) 28, 245, 428, 725, 856, 1157
SspMI CTAG 2 cut(s) 386, 1175
StuI AGGCCT 1 cut(s) 877
StyD4I CCNGG 1 cut(s) 252
StyI CCWWGG 1 cut(s) 1075
TaaI ACNGT 2 cut(s) 128, 602
TaiI ACGT 6 cut(s) 396, 715, 933, 973, 1003, 1015
TaqI TCGA 8 cut(s) 17, 35, 175, 477, 546, 681, 940, 996
TasI AATT 6 cut(s) 78, 159, 637, 919, 986, 1017
TatI WGTACW 3 cut(s) 123, 226, 693
TauI GCSGC 2 cut(s) 30, 248
TfiI GAWTC 2 cut(s) 267, 1049
Tru1I TTAA 2 cut(s) 381, 689
Tru9I TTAA 2 cut(s) 381, 689
TscAI CASTG 2 cut(s) 544, 841
TseFI GTSAC 1 cut(s) 423
TseI GCWGC 3 cut(s) 140, 170, 430
Tsp45I GTSAC 1 cut(s) 423
TspDTI ATGAA 1 cut(s) 925
TspGWI ACGGA 1 cut(s) 852
TspRI CASTG 2 cut(s) 544, 841
VneI GTGCAC 1 cut(s) 1065
XcmI CCANNNNNNNNNTGG 2 cut(s) 278, 1082
XmnI GAANNNNTTC 1 cut(s) 732
XspI CTAG 2 cut(s) 386, 1175
ZraI GACGTC 1 cut(s) 931
ZrmI AGTACT 2 cut(s) 228, 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.