Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001714

Physical Location & Seq

Genomic Coordinates Forward (+)

8043643 .. 8046478

Gene Structure 2836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G141600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGAACAAACTCCGATCAACGAAGACTCACCCTCCGTCAGCAAAAAAGCCGCCATGAAGCAAGAGAAGCTTAGCCAACTACGGAGAGTTTCCTACAATCGAAGACAGTGGAGAACGTCAGCTGACGGACCCAGAGAGAGATGGTTTACCGTGCAGTGTGTGGTGACGGTCCAGCCTAGTACTGTGAGCCGCCAGATGGTTAATTCTGTATTTGAAGGCTTTAGTGAAATCCACACGCCAAAACTGATTGCGGGTTCAAGTGAAGGTGATGCTGCTGATACACTCTACTACAAGGGTCAACCTGCCTGCCTCACCCAATCACCCCAGCTTCACAAACAGATGGCCATCTGTGCTGAATTTCGCGTGGTTTTTGAGATGGGTCCTGTTTATAGAGGCGAGGACTCAAATACCCATAGGCATTTATGTGAATTTACTGGTCTTGATGTTGAAATGGAGATCGACTTGCACTATTCTGAGGTGATGGATGTTGTTGCCCGTTTATTTGTTACAATATTTGGCACTTTGAACAAAACTTGTCAAAAGGAGCTTGAAGCAGTAGGGAGGCAATATCCCTTCGAACCATTGAAGTATTTGCCGAAAACTCGGCGACTTACGTTTGAAGAAGGTGTTCAAATGCTTAAGGATGCTGGCGTTGAAGTGGATCCCATGGGGGACCTTAACACTGAGGCTAAGAGAAAACTAGGGCAACTGGTTCTGGATAAGTACGGCACTGAGTTCTACATACTGCACTGGTATCCTTTGGCTATTAGGCCGTTCTATACGATGCCTTGCCACTATAATTCTGCCTACAGTAATTCATTTGATGTTTTTATTCGAGGTGAGGAGATAATTTCTGGTGCTCAGCGTGAGCACAGACCAAAGTTACTTGAGAAAATAGCACAAGCATGTGGGATTGAATTGAAAACAATTTCAACATATATAGATGCTATTAGAAACGGTGTAACTCTGCACGGTGGGTTCGGGGCAGGGCTGGAGCGTGTTGTCATGCTTTTCCTAATGGGGCGGAAATTGCATCGGCATAGGTCTATGCCGGCGAAGTTTGCCATATTAGCAGGGTATAGCCGATCGGCTATCCTATTTCTTCAACAAAATTTAAAAAATCTAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006422 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045202 GO:0046483 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0098542 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2 tRNA_anti-codon

Protein Analysis

377

Amino Acids

42.86

Weight (kDa)

8.7

Isoelectric Point (pI)

52.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26870 AT4G31180 AT4G31180
fragaria_vesca	FvH4_2g15870 FvH4_2g15910 FvH4_2g30550
malus_domestica	MD08G1134400.v1.1 MD12G1153800.v1.1 MD14G1143300.v1.1 MD15G1113400.v1.1
prunus_persica	Prupe.1G463800_v2.0.a1 Prupe.4G141600_v2.0.a1 Prupe.8G055000_v2.0.a1
pyrus_communis	pycom08g11340 pycom15g10170 pycom16g11710
rosa_chinensis	RchiOBHm_Chr5g0032141 RchiOBHm_Chr5g0032161 RchiOBHm_Chr6g0278871 RchiOBHm_Chr6g0312531
rosa_laevigata	RLG00000010321 RLG00000033368
rosa_multiflora	Rmu_co8427103.1_g000001 Rmu_sc0003031.1_g000023 Rmu_sc0005375.1_g000002 Rmu_sc0005375.1_g000011 Rmu_sc0008363.1_g000011 Rmu_sc0043080.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048240 Rroxscaffold_1G00048270 Rroxscaffold_7G00156770
rosa_rugosa	Rorug06G0119800 Rorug06G0120000 Rorug06G0123400 Rorug06G0396100 Rorug06G0396200
rosa_samantha	Rh5DG228900 Rh6AG228300 Rh6AG513500 Rh6BG233900 Rh6BG234000 Rh6BG524200 Rh6BG526500 Rh6CG236300 Rh6CG531400 Rh6DG515600
rosa_wichuraiana	Rw6G020030 Rw6G044650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	310
AccII	CGCG	1 cut(s)	363
AciI	CCGC	4 cut(s)	51, 190, 251, 1024
AclWI	GGATC	2 cut(s)	656, 669
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	3 cut(s)	356, 428, 1111
AfaI	GTAC	2 cut(s)	181, 725
AfiI	CCNNNNNNNGG	1 cut(s)	196
AflII	CTTAAG	1 cut(s)	638
AluBI	AGCT	4 cut(s)	70, 122, 328, 547
AluI	AGCT	4 cut(s)	70, 122, 328, 547
Alw21I	GWGCWC	2 cut(s)	862, 873
AlwI	GGATC	2 cut(s)	656, 669
AoxI	GGCC	2 cut(s)	342, 770
ApeKI	GCWGC	1 cut(s)	272
ApoI	RAATTY	3 cut(s)	356, 428, 1111
Asp700I	GAANNNNTTC	1 cut(s)	627
AspS9I	GGNCC	4 cut(s)	128, 169, 380, 673
AsuHPI	GGTGA	7 cut(s)	21, 175, 278, 304, 312, 490, 851
AsuII	TTCGAA	1 cut(s)	576
AvaII	GGWCC	4 cut(s)	128, 169, 380, 673
BalI	TGGCCA	1 cut(s)	344
BamHI	GGATCC	1 cut(s)	661
BbsI	GAAGAC	2 cut(s)	30, 109
Bbv12I	GWGCWC	2 cut(s)	862, 873
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	6 cut(s)	135, 190, 334, 353, 370, 475
BceAI	ACGGC	2 cut(s)	742, 757
BciVI	GTATCC	1 cut(s)	765
BfaI	CTAG	3 cut(s)	177, 701, 1124
BfmI	CTRYAG	1 cut(s)	808
BfrI	CTTAAG	1 cut(s)	638
BfuAI	ACCTGC	1 cut(s)	310
BfuI	GTATCC	1 cut(s)	765
BisI	GCNGC	3 cut(s)	51, 190, 273
BlpI	GCTNAGC	2 cut(s)	71, 861
BlsI	GCNGC	3 cut(s)	52, 191, 274
BmcAI	AGTACT	1 cut(s)	181
Bme18I	GGWCC	4 cut(s)	128, 169, 380, 673
BmgT120I	GGNCC	4 cut(s)	128, 169, 380, 673
BmiI	GGNNCC	4 cut(s)	130, 381, 663, 674
BmsI	GCATC	5 cut(s)	259, 634, 774, 934, 1042
BpiI	GAAGAC	2 cut(s)	30, 109
BpmI	CTGGAG	1 cut(s)	1013
Bpu1102I	GCTNAGC	2 cut(s)	71, 861
Bpu14I	TTCGAA	1 cut(s)	576
BpuEI	CTTGAG	1 cut(s)	908
BsaBI	GATNNNNATC	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	666
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse118I	RCCGGY	1 cut(s)	1051
Bse1I	ACTGG	3 cut(s)	439, 714, 755
Bse8I	GATNNNNATC	1 cut(s)	344
BseDI	CCNNGG	1 cut(s)	666
BseGI	GGATG	2 cut(s)	490, 649
BseJI	GATNNNNATC	1 cut(s)	344
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	4 cut(s)	465, 675, 723, 875
BseNI	ACTGG	3 cut(s)	439, 714, 755
BseRI	GAGGAG	1 cut(s)	857
BseXI	GCAGC	1 cut(s)	259
BseYI	CCCAGC	1 cut(s)	324
BsgI	GTGCAG	3 cut(s)	173, 731, 953
Bsh1236I	CGCG	1 cut(s)	363
Bsh1285I	CGRYCG	1 cut(s)	1088
BshFI	GGCC	2 cut(s)	344, 772
BsiEI	CGRYCG	1 cut(s)	1088
BsiHKAI	GWGCWC	2 cut(s)	862, 873
BsiSI	CCGG	1 cut(s)	1052
BslFI	GGGAC	1 cut(s)	686
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	686
BsnI	GGCC	2 cut(s)	344, 772
Bsp119I	TTCGAA	1 cut(s)	576
Bsp1286I	GDGCHC	2 cut(s)	862, 873
Bsp143I	GATC	4 cut(s)	15, 456, 661, 1085
Bsp1720I	GCTNAGC	2 cut(s)	71, 861
Bsp19I	CCATGG	1 cut(s)	666
BspACI	CCGC	4 cut(s)	51, 190, 251, 1024
BspANI	GGCC	2 cut(s)	344, 772
BspCNI	CTCAG	4 cut(s)	466, 676, 724, 874
BspFNI	CGCG	1 cut(s)	363
BspLI	GGNNCC	4 cut(s)	130, 381, 663, 674
BspMI	ACCTGC	1 cut(s)	310
BspPI	GGATC	2 cut(s)	656, 669
BspT104I	TTCGAA	1 cut(s)	576
BspTI	CTTAAG	1 cut(s)	638
BsrFI	RCCGGY	1 cut(s)	1051
BsrI	ACTGG	3 cut(s)	439, 714, 755
BssAI	RCCGGY	1 cut(s)	1051
BssECI	CCNNGG	1 cut(s)	666
BssMI	GATC	4 cut(s)	15, 456, 661, 1085
BssT1I	CCWWGG	1 cut(s)	666
Bst4CI	ACNGT	7 cut(s)	108, 151, 169, 184, 812, 959, 974
BstAFI	CTTAAG	1 cut(s)	638
BstBI	TTCGAA	1 cut(s)	576
BstC8I	GCNNGC	3 cut(s)	307, 649, 1053
BstDEI	CTNAG	6 cut(s)	71, 474, 684, 690, 732, 861
BstDSI	CCRYGG	1 cut(s)	666
BstF5I	GGATG	2 cut(s)	490, 649
BstFNI	CGCG	1 cut(s)	363
BstKTI	GATC	4 cut(s)	18, 459, 664, 1088
BstMBI	GATC	4 cut(s)	15, 456, 661, 1085
BstMCI	CGRYCG	1 cut(s)	1088
BstMWI	GCNNNNNNNGC	5 cut(s)	67, 350, 1030, 1061, 1070
BstNSI	RCATGY	1 cut(s)	909
BstSFI	CTRYAG	1 cut(s)	808
BstUI	CGCG	1 cut(s)	363
BstV1I	GCAGC	1 cut(s)	259
BstV2I	GAAGAC	2 cut(s)	30, 109
BstX2I	RGATCY	1 cut(s)	661
BstYI	RGATCY	1 cut(s)	661
BsuI	GTATCC	1 cut(s)	765
BsuRI	GGCC	2 cut(s)	344, 772
BtgI	CCRYGG	1 cut(s)	666
BtsCI	GGATG	2 cut(s)	490, 649
BtsI	GCAGTG	1 cut(s)	161
BtsIMutI	CAGTG	5 cut(s)	113, 161, 681, 729, 748
BveI	ACCTGC	1 cut(s)	310
Cac8I	GCNNGC	3 cut(s)	307, 649, 1053
Cfr10I	RCCGGY	1 cut(s)	1051
Cfr13I	GGNCC	4 cut(s)	128, 169, 380, 673
Csp6I	GTAC	2 cut(s)	180, 724
CviAII	CATG	4 cut(s)	55, 667, 906, 1006
CviQI	GTAC	2 cut(s)	180, 724
DdeI	CTNAG	6 cut(s)	71, 474, 684, 690, 732, 861
DpnI	GATC	4 cut(s)	17, 458, 663, 1087
DpnII	GATC	4 cut(s)	15, 456, 661, 1085
DraI	TTTAAA	1 cut(s)	1116
EaeI	YGGCCR	1 cut(s)	342
EciI	GGCGGA	1 cut(s)	1039
Eco130I	CCWWGG	1 cut(s)	666
Eco47I	GGWCC	4 cut(s)	128, 169, 380, 673
EcoO109I	RGGNCCY	2 cut(s)	380, 673
EcoT14I	CCWWGG	1 cut(s)	666
ErhI	CCWWGG	1 cut(s)	666
FaeI	CATG	4 cut(s)	58, 670, 909, 1009
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FaqI	GGGAC	1 cut(s)	686
FatI	CATG	4 cut(s)	54, 666, 905, 1005
FauI	CCCGC	1 cut(s)	244
Fnu4HI	GCNGC	3 cut(s)	51, 190, 273
FokI	GGATG	2 cut(s)	497, 656
Fsp4HI	GCNGC	3 cut(s)	51, 190, 273
FspBI	CTAG	3 cut(s)	177, 701, 1124
GluI	GCNGC	3 cut(s)	51, 190, 273
GsaI	CCCAGC	1 cut(s)	328
GsuI	CTGGAG	1 cut(s)	1013
HaeIII	GGCC	2 cut(s)	344, 772
HapII	CCGG	1 cut(s)	1052
Hin1II	CATG	4 cut(s)	58, 670, 909, 1009
HincII	GTYRAC	1 cut(s)	299
HindII	GTYRAC	1 cut(s)	299
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	2 cut(s)	26, 401
HpaII	CCGG	1 cut(s)	1052
HphI	GGTGA	7 cut(s)	21, 175, 278, 304, 312, 490, 851
Hpy166II	GTNNAC	2 cut(s)	147, 299
Hpy188I	TCNGA	2 cut(s)	15, 475
Hpy188III	TCNNGA	2 cut(s)	440, 716
Hpy8I	GTNNAC	2 cut(s)	147, 299
HpyAV	CCTTC	4 cut(s)	209, 257, 583, 617
HpyCH4III	ACNGT	7 cut(s)	108, 151, 169, 184, 812, 959, 974
HpyCH4IV	ACGT	2 cut(s)	116, 614
HpyCH4V	TGCA	5 cut(s)	154, 466, 748, 970, 1033
HpyF10VI	GCNNNNNNNGC	5 cut(s)	67, 350, 1030, 1061, 1070
HpyF3I	CTNAG	6 cut(s)	71, 474, 684, 690, 732, 861
HpySE526I	ACGT	2 cut(s)	116, 614
Hsp92II	CATG	4 cut(s)	58, 670, 909, 1009
KroI	GCCGGC	1 cut(s)	1051
KroNI	GCCGGC	1 cut(s)	1053
Kzo9I	GATC	4 cut(s)	15, 456, 661, 1085
LmnI	GCTCC	2 cut(s)	544, 994
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	5 cut(s)	259, 634, 774, 934, 1042
MaeI	CTAG	3 cut(s)	177, 701, 1124
MaeII	ACGT	2 cut(s)	116, 614
MaeIII	GTNAC	4 cut(s)	163, 505, 882, 961
MalI	GATC	4 cut(s)	17, 458, 663, 1087
MboI	GATC	4 cut(s)	15, 456, 661, 1085
MboII	GAAGA	4 cut(s)	35, 114, 632, 1094
MflI	RGATCY	1 cut(s)	661
MhlI	GDGCHC	2 cut(s)	862, 873
MlsI	TGGCCA	1 cut(s)	344
MluNI	TGGCCA	1 cut(s)	344
MlyI	GAGTC	2 cut(s)	20, 395
MnlI	CCTC	9 cut(s)	43, 320, 386, 391, 469, 555, 679, 830, 835
Mox20I	TGGCCA	1 cut(s)	344
MroNI	GCCGGC	1 cut(s)	1051
MroXI	GAANNNNTTC	1 cut(s)	627
MscI	TGGCCA	1 cut(s)	344
MseI	TTAA	4 cut(s)	201, 639, 678, 1115
MslI	CAYNNNNRTG	2 cut(s)	423, 904
Msp20I	TGGCCA	1 cut(s)	344
MspA1I	CMGCKG	1 cut(s)	122
MspCI	CTTAAG	1 cut(s)	638
MspI	CCGG	1 cut(s)	1052
MvnI	CGCG	1 cut(s)	363
MwoI	GCNNNNNNNGC	5 cut(s)	67, 350, 1030, 1061, 1070
NaeI	GCCGGC	1 cut(s)	1053
NcoI	CCATGG	1 cut(s)	666
NdeII	GATC	4 cut(s)	15, 456, 661, 1085
NgoMIV	GCCGGC	1 cut(s)	1051
NlaIII	CATG	4 cut(s)	58, 670, 909, 1009
NlaIV	GGNNCC	4 cut(s)	130, 381, 663, 674
NmeAIII	GCCGAG	1 cut(s)	583
NmuCI	GTSAC	1 cut(s)	163
NspI	RCATGY	1 cut(s)	909
NspV	TTCGAA	1 cut(s)	576
PdiI	GCCGGC	1 cut(s)	1053
PdmI	GAANNNNTTC	1 cut(s)	627
PkrI	GCNGC	3 cut(s)	52, 191, 274
Ple19I	CGATCG	1 cut(s)	1088
PleI	GAGTC	2 cut(s)	20, 395
PpsI	GAGTC	2 cut(s)	20, 395
PpuMI	RGGWCCY	2 cut(s)	380, 673
Psp5II	RGGWCCY	2 cut(s)	380, 673
PspFI	CCCAGC	1 cut(s)	324
PspN4I	GGNNCC	4 cut(s)	130, 381, 663, 674
PspPI	GGNCC	4 cut(s)	128, 169, 380, 673
PspPPI	RGGWCCY	2 cut(s)	380, 673
PsuI	RGATCY	1 cut(s)	661
PvuI	CGATCG	1 cut(s)	1088
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	2 cut(s)	181, 725
RsaNI	GTAC	2 cut(s)	180, 724
RseI	CAYNNNNRTG	2 cut(s)	423, 904
SaqAI	TTAA	4 cut(s)	201, 639, 678, 1115
SatI	GCNGC	3 cut(s)	51, 190, 273
Sau3AI	GATC	4 cut(s)	15, 456, 661, 1085
Sau96I	GGNCC	4 cut(s)	128, 169, 380, 673
ScaI	AGTACT	1 cut(s)	181
SchI	GAGTC	2 cut(s)	20, 395
SduI	GDGCHC	2 cut(s)	862, 873
SfaNI	GCATC	5 cut(s)	259, 634, 774, 934, 1042
SfcI	CTRYAG	1 cut(s)	808
SfuI	TTCGAA	1 cut(s)	576
SinI	GGWCC	4 cut(s)	128, 169, 380, 673
SmiMI	CAYNNNNRTG	2 cut(s)	423, 904
SmlI	CTYRAG	2 cut(s)	638, 887
SmoI	CTYRAG	2 cut(s)	638, 887
SsiI	CCGC	4 cut(s)	51, 190, 251, 1024
SspI	AATATT	1 cut(s)	513
SspMI	CTAG	3 cut(s)	177, 701, 1124
StyI	CCWWGG	1 cut(s)	666
TaaI	ACNGT	7 cut(s)	108, 151, 169, 184, 812, 959, 974
TaiI	ACGT	2 cut(s)	119, 617
TaqI	TCGA	4 cut(s)	100, 459, 576, 835
TatI	WGTACW	1 cut(s)	179
TauI	GCSGC	2 cut(s)	53, 192
Tru1I	TTAA	4 cut(s)	201, 639, 678, 1115
Tru9I	TTAA	4 cut(s)	201, 639, 678, 1115
TscAI	CASTG	5 cut(s)	113, 161, 688, 736, 755
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	2 cut(s)	71, 807
TspGWI	ACGGA	3 cut(s)	25, 97, 141
TspRI	CASTG	5 cut(s)	113, 161, 688, 736, 755
Vha464I	CTTAAG	1 cut(s)	638
VpaK11BI	GGWCC	4 cut(s)	128, 169, 380, 673
XapI	RAATTY	3 cut(s)	356, 428, 1111
XceI	RCATGY	1 cut(s)	909
XmnI	GAANNNNTTC	1 cut(s)	627
XspI	CTAG	3 cut(s)	177, 701, 1124
ZrmI	AGTACT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.