Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001714

Physical Location & Seq

Genomic Coordinates Reverse (-)

23601674 .. 23602713

Gene Structure 1040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1143300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGGGTTTGGGCGGAAACAAGGTTGTTTTTCTGCTGGGGATTTTGGGGTGGAGGTTCAAGTGAGGAAGTTGTATTGTGTGAGTAAGGCTGCTGTTTTACCTATTAACATTGAGGATGCTGCTCGGAGTGATGTCGAAATCGAAAAGGCTTTGCTGGATGCCCACTTGAATAACCAAGTTCTTGATTTGCGAACACCTGCGAATCAAGGGATATTCCGCATTCAGAGTCAACTTGGCAATATCTTTAGGCAGTTCTTGATATCCGAATGCTTTTTTGAAATCCACTCGCCAAAGCTGATTGCTGGTTCAAGTAAAGGTGGAGCTGCTGTTTTTAGACTCAACTACAAGGGTCAAGATGCCTGCCTTGCCCAGTCACCTCAGCTCACAAGCAGATGTCTATATGTGGGGACTTCGGCCGTATTTTTGAGATTGGTCCTGTTTTTAGAGCTGAGGACTCCTTTACCCATAGGCATTTGTGTGAGTTCACTGGCCTTGATGTTGAGATGGAGATCAAGAGGCACTACTTTGAGGTGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006422 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045202 GO:0046483 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0098542 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2 tRNA_anti-codon

Protein Analysis

180

Amino Acids

19.84

Weight (kDa)

9.5

Isoelectric Point (pI)

63.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2	PF00152	54 - 141	3.4e-12	tRNA synthetases class II (D, K and N)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26870 AT4G31180 AT4G31180
fragaria_vesca	FvH4_2g15870 FvH4_2g15910 FvH4_2g30550
malus_domestica	MD08G1134400.v1.1 MD12G1153800.v1.1 MD14G1143300.v1.1 MD15G1113400.v1.1
prunus_persica	Prupe.1G463800_v2.0.a1 Prupe.4G141600_v2.0.a1 Prupe.8G055000_v2.0.a1
pyrus_communis	pycom08g11340 pycom15g10170 pycom16g11710
rosa_chinensis	RchiOBHm_Chr5g0032141 RchiOBHm_Chr5g0032161 RchiOBHm_Chr6g0278871 RchiOBHm_Chr6g0312531
rosa_laevigata	RLG00000010321 RLG00000033368
rosa_multiflora	Rmu_co8427103.1_g000001 Rmu_sc0003031.1_g000023 Rmu_sc0005375.1_g000002 Rmu_sc0005375.1_g000011 Rmu_sc0008363.1_g000011 Rmu_sc0043080.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048240 Rroxscaffold_1G00048270 Rroxscaffold_7G00156770
rosa_rugosa	Rorug06G0119800 Rorug06G0120000 Rorug06G0123400 Rorug06G0396100 Rorug06G0396200
rosa_samantha	Rh5DG228900 Rh6AG228300 Rh6AG513500 Rh6BG233900 Rh6BG234000 Rh6BG524200 Rh6BG526500 Rh6CG236300 Rh6CG531400 Rh6DG515600
rosa_wichuraiana	Rw6G020030 Rw6G044650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	205
Acc36I	ACCTGC	1 cut(s)	205
AciI	CCGC	2 cut(s)	13, 217
AcoI	YGGCCR	1 cut(s)	414
AgsI	TTSAA	4 cut(s)	59, 169, 278, 309
AluBI	AGCT	4 cut(s)	295, 323, 382, 448
AluI	AGCT	4 cut(s)	295, 323, 382, 448
AoxI	GGCC	2 cut(s)	414, 489
ApeKI	GCWGC	3 cut(s)	89, 119, 323
AspS9I	GGNCC	1 cut(s)	433
AsuHPI	GGTGA	1 cut(s)	366
AvaII	GGWCC	1 cut(s)	433
BbvCI	CCTCAGC	2 cut(s)	378, 449
BbvI	GCAGC	3 cut(s)	76, 106, 310
BccI	CCATC	1 cut(s)	498
BceAI	ACGGC	1 cut(s)	401
BfuAI	ACCTGC	1 cut(s)	205
BisI	GCNGC	3 cut(s)	90, 120, 324
BlsI	GCNGC	3 cut(s)	91, 121, 325
Bme18I	GGWCC	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	433
BmrI	ACTGGG	1 cut(s)	364
BmsI	GCATC	3 cut(s)	106, 148, 346
BmuI	ACTGGG	1 cut(s)	364
Bpu10I	CCTNAGC	2 cut(s)	378, 449
BsaBI	GATNNNNATC	1 cut(s)	508
BsaXI	ACNNNNNCTCC	2 cut(s)	312, 342
Bse1I	ACTGG	2 cut(s)	370, 492
Bse8I	GATNNNNATC	1 cut(s)	508
BseGI	GGATG	2 cut(s)	121, 163
BseJI	GATNNNNATC	1 cut(s)	508
BseMII	CTCAG	2 cut(s)	392, 440
BseNI	ACTGG	2 cut(s)	370, 492
BseX3I	CGGCCG	1 cut(s)	414
BseXI	GCAGC	3 cut(s)	76, 106, 310
BseYI	CCCAGC	1 cut(s)	35
Bsh1285I	CGRYCG	1 cut(s)	417
BshFI	GGCC	2 cut(s)	416, 491
BsiEI	CGRYCG	1 cut(s)	417
BslFI	GGGAC	1 cut(s)	421
BsmFI	GGGAC	1 cut(s)	421
BsmI	GAATGC	2 cut(s)	219, 272
BsnI	GGCC	2 cut(s)	416, 491
Bsp143I	GATC	1 cut(s)	509
BspACI	CCGC	2 cut(s)	13, 217
BspANI	GGCC	2 cut(s)	416, 491
BspCNI	CTCAG	2 cut(s)	391, 441
BspMI	ACCTGC	1 cut(s)	205
BsrI	ACTGG	2 cut(s)	370, 492
BssMI	GATC	1 cut(s)	509
BstC8I	GCNNGC	1 cut(s)	361
BstDEI	CTNAG	2 cut(s)	378, 449
BstF5I	GGATG	2 cut(s)	121, 163
BstKTI	GATC	1 cut(s)	512
BstMBI	GATC	1 cut(s)	509
BstMCI	CGRYCG	1 cut(s)	417
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstV1I	GCAGC	3 cut(s)	76, 106, 310
BstZI	CGGCCG	1 cut(s)	414
BsuRI	GGCC	2 cut(s)	416, 491
BtsCI	GGATG	2 cut(s)	121, 163
BtsIMutI	CAGTG	1 cut(s)	485
BveI	ACCTGC	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	361
Cfr13I	GGNCC	1 cut(s)	433
CviJI	RGCY	8 cut(s)	89, 149, 295, 323, 382, 416, 448, 491
CviKI_1	RGCY	8 cut(s)	89, 149, 295, 323, 382, 416, 448, 491
DdeI	CTNAG	2 cut(s)	378, 449
DpnI	GATC	1 cut(s)	511
DpnII	GATC	1 cut(s)	509
EaeI	YGGCCR	1 cut(s)	414
EagI	CGGCCG	1 cut(s)	414
EciI	GGCGGA	1 cut(s)	28
EclXI	CGGCCG	1 cut(s)	414
Eco32I	GATATC	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	433
Eco52I	CGGCCG	1 cut(s)	414
EcoRV	GATATC	1 cut(s)	261
FaiI	YATR	3 cut(s)	400, 402, 467
FaqI	GGGAC	1 cut(s)	421
Fnu4HI	GCNGC	3 cut(s)	90, 120, 324
FokI	GGATG	2 cut(s)	128, 170
Fsp4HI	GCNGC	3 cut(s)	90, 120, 324
GluI	GCNGC	3 cut(s)	90, 120, 324
GsaI	CCCAGC	1 cut(s)	39
HaeIII	GGCC	2 cut(s)	416, 491
HincII	GTYRAC	1 cut(s)	230
HindII	GTYRAC	1 cut(s)	230
HinfI	GANTC	4 cut(s)	202, 226, 336, 454
HphI	GGTGA	1 cut(s)	366
Hpy166II	GTNNAC	2 cut(s)	230, 485
Hpy188I	TCNGA	3 cut(s)	126, 225, 265
Hpy188III	TCNNGA	4 cut(s)	182, 256, 353, 513
Hpy8I	GTNNAC	2 cut(s)	230, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	2 cut(s)	378, 449
Kzo9I	GATC	1 cut(s)	509
LmnI	GCTCC	1 cut(s)	320
LpnPI	CCDG	8 cut(s)	21, 140, 210, 288, 373, 383, 449, 473
Lsp1109I	GCAGC	3 cut(s)	76, 106, 310
LweI	GCATC	3 cut(s)	106, 148, 346
MaeIII	GTNAC	1 cut(s)	372
MalI	GATC	1 cut(s)	511
MboI	GATC	1 cut(s)	509
MluCI	AATT	1 cut(s)	535
MlyI	GAGTC	3 cut(s)	235, 330, 448
MnlI	CCTC	7 cut(s)	46, 57, 106, 387, 444, 509, 522
MseI	TTAA	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	476
Mva1269I	GAATGC	2 cut(s)	219, 272
MwoI	GCNNNNNNNGC	1 cut(s)	365
NdeII	GATC	1 cut(s)	509
NmuCI	GTSAC	1 cut(s)	372
PaqCI	CACCTGC	1 cut(s)	205
PctI	GAATGC	2 cut(s)	219, 272
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	3 cut(s)	91, 121, 325
PleI	GAGTC	3 cut(s)	234, 330, 448
PpsI	GAGTC	3 cut(s)	234, 330, 448
PspFI	CCCAGC	1 cut(s)	35
PspPI	GGNCC	1 cut(s)	433
RseI	CAYNNNNRTG	1 cut(s)	476
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	3 cut(s)	90, 120, 324
Sau3AI	GATC	1 cut(s)	509
Sau96I	GGNCC	1 cut(s)	433
SchI	GAGTC	3 cut(s)	235, 330, 448
SfaNI	GCATC	3 cut(s)	106, 148, 346
SinI	GGWCC	1 cut(s)	433
SmiMI	CAYNNNNRTG	1 cut(s)	476
Sse9I	AATT	1 cut(s)	535
SsiI	CCGC	2 cut(s)	13, 217
TaqI	TCGA	2 cut(s)	135, 141
TasI	AATT	1 cut(s)	535
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	1 cut(s)	492
TseFI	GTSAC	1 cut(s)	372
TseI	GCWGC	3 cut(s)	89, 119, 323
Tsp45I	GTSAC	1 cut(s)	372
TspRI	CASTG	1 cut(s)	492
VpaK11BI	GGWCC	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.