RLG00000033368

aspartate--tRNA ligase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
26390887 .. 26393562
2676 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033368

Sequence Viewer

Length: 1011 bp
ATGTCAATTGCCACGTTGATTGGACGGGACTTTCATTCTCAAAATGTCAGAACCTCAGCCAACCACCCAGCCCAACCAGAGCCAGAGAAGGAGGAATCAGCCTCTCTGAGCAAAAAGGAGGCGAAGAAAGAAAAGGCTAAGCTCGAGAAGCTCCGTCGCAACCAAGAGCAAGAAGCGGCACCGCCGCGGCTCGCGCTCAGTCTGCCGAGCCAGAGGACCCGCTTGCCGCTAACTACGGTGACGTGCCGCTCATTCAGAATTGAAGGACCAGAAGGTTCTGATACGCGGCCATGCACAGACGATCCGAGCCTTCGGGTCTTCGGGAAGAACATGGCGTTTAATTGTGGTAAGAAACAGAAGGGGTTCACGGTTCAGTGCGTCGTGACGGTTCAGCCGGAGATTGTGAGCCCTCAGATGGTGAAGTACGTGGTGGCGTTGAGCCCCGGGAGTCGACTATCAAGGAATTGTGCTGCTGTTTTGCCTTTTAACATTGAGGATGCTGCTCGAAGTGAAAAACCTAATGAGGATGGAGAACAACTGGTTCGCGTCAAACAGGATAAACGCTTGAACTACCGAGTACTTGACTTGCGAACACCGGCAAACCTGGGGATTTTCAACAGGAAGTTGGGCCAAATAGTTTCGGAGAAATACGGCACTGATTTCTACATACTTCACCGCTATCCGTTGTCTGTGAGGCCTTTCTATACCCTGCCGGCTTGCCTTGCGACGATAATCCTGAATTTTGTAATTCTTTTGACGTCTTCATTCGAGGTGAGGAGATTATATCAGAAGCACAACGTATCCATGTACCAAAATTGTTGGCTGAACGTGCTGAAGCATGTGGAATTGAAGTCGACTAGTCCAGACAATATCAACATATATGGATTCCTTCAGGTATGGTGTACTCCCCAAGGTGGATTTGGAGCAGGGCTGGAGCGTGTTGTGATGCTCTTCTGTGGTTTGAATTACATCCCAAAACTTCCTTATTCTCGCGTGATCCGCGCCGGCTAG

Protein Analysis

337

Amino Acids

37.96

Weight (kDa)

9.62

Isoelectric Point (pI)

59.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 761
AccB1I GGYRCC 1 cut(s) 178
AccBSI CCGCTC 1 cut(s) 249
AccI GTMKAC 2 cut(s) 451, 854
AccII CGCG 6 cut(s) 187, 194, 286, 546, 993, 1002
AclWI GGATC 2 cut(s) 296, 991
AcoI YGGCCR 1 cut(s) 287
AcsI RAATTY 1 cut(s) 739
AcuI CTGAAG 2 cut(s) 854, 875
AcyI GRCGYC 1 cut(s) 758
AfaI GTAC 4 cut(s) 425, 579, 809, 904
AfiI CCNNNNNNNGG 2 cut(s) 415, 914
AgsI TTSAA 5 cut(s) 263, 568, 616, 850, 964
AhlI ACTAGT 1 cut(s) 857
AjiI CACGTC 1 cut(s) 243
AjnI CCWGG 1 cut(s) 603
AluBI AGCT 2 cut(s) 142, 151
AluI AGCT 2 cut(s) 142, 151
AlwI GGATC 2 cut(s) 296, 991
Ama87I CYCGRG 2 cut(s) 143, 443
AoxI GGCC 3 cut(s) 287, 628, 695
ApeKI GCWGC 2 cut(s) 470, 500
ApoI RAATTY 1 cut(s) 739
Asp700I GAANNNNTTC 1 cut(s) 362
AspLEI GCGC 2 cut(s) 196, 1004
AspS9I GGNCC 3 cut(s) 216, 266, 628
AsuC2I CCSGG 2 cut(s) 444, 445
AsuHPI GGTGA 4 cut(s) 250, 430, 665, 784
AvaI CYCGRG 2 cut(s) 143, 443
AvaII GGWCC 2 cut(s) 216, 266
BanI GGYRCC 1 cut(s) 178
BanII GRGCYC 2 cut(s) 410, 443
BbsI GAAGAC 2 cut(s) 310, 753
BbvCI CCTCAGC 1 cut(s) 55
BbvI GCAGC 2 cut(s) 457, 487
BccI CCATC 2 cut(s) 409, 521
BceAI ACGGC 1 cut(s) 667
BciT130I CCWGG 1 cut(s) 605
BciVI GTATCC 1 cut(s) 811
BcnI CCSGG 2 cut(s) 444, 445
BcuI ACTAGT 1 cut(s) 857
BfaI CTAG 2 cut(s) 858, 1009
BfuI GTATCC 1 cut(s) 811
BisI GCNGC 8 cut(s) 177, 185, 188, 227, 247, 287, 471, 501
BlpI GCTNAGC 1 cut(s) 138
BlsI GCNGC 8 cut(s) 178, 186, 189, 228, 248, 288, 472, 502
BmcAI AGTACT 1 cut(s) 579
Bme1390I CCNGG 3 cut(s) 444, 445, 605
Bme18I GGWCC 2 cut(s) 216, 266
BmeT110I CYCGRG 2 cut(s) 143, 443
BmgBI CACGTC 1 cut(s) 243
BmgT120I GGNCC 3 cut(s) 216, 266, 628
BmiI GGNNCC 2 cut(s) 180, 218
BmrFI CCNGG 3 cut(s) 444, 445, 605
BmsI GCATC 2 cut(s) 487, 936
BpiI GAAGAC 2 cut(s) 310, 753
BpmI CTGGAG 1 cut(s) 953
Bpu10I CCTNAGC 1 cut(s) 55
Bpu1102I GCTNAGC 1 cut(s) 138
BpuMI CCSGG 2 cut(s) 444, 445
BsaAI YACGTR 1 cut(s) 427
BsaHI GRCGYC 1 cut(s) 758
BsaJI CCNNGG 5 cut(s) 185, 442, 443, 604, 910
Bsc4I CCNNNNNNNGG 2 cut(s) 415, 914
Bse118I RCCGGY 3 cut(s) 595, 712, 1004
Bse1I ACTGG 1 cut(s) 543
BseBI CCWGG 1 cut(s) 605
BseDI CCNNGG 5 cut(s) 185, 442, 443, 604, 910
BseGI GGATG 3 cut(s) 502, 532, 969
BseLI CCNNNNNNNGG 2 cut(s) 415, 914
BseMII CTCAG 4 cut(s) 69, 98, 211, 425
BseNI ACTGG 1 cut(s) 543
BseRI GAGGAG 1 cut(s) 790
BseXI GCAGC 2 cut(s) 457, 487
BseYI CCCAGC 1 cut(s) 67
Bsh1236I CGCG 6 cut(s) 187, 194, 286, 546, 993, 1002
BshFI GGCC 3 cut(s) 289, 630, 697
BshNI GGYRCC 1 cut(s) 178
BsiHKCI CYCGRG 2 cut(s) 143, 443
BsiSI CCGG 5 cut(s) 395, 444, 596, 713, 1005
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 2 cut(s) 415, 914
BsmFI GGGAC 1 cut(s) 41
BsnI GGCC 3 cut(s) 289, 630, 697
BsoBI CYCGRG 2 cut(s) 143, 443
Bsp1286I GDGCHC 2 cut(s) 410, 443
Bsp143I GATC 2 cut(s) 301, 996
Bsp1720I GCTNAGC 1 cut(s) 138
BspANI GGCC 3 cut(s) 289, 630, 697
BspCNI CTCAG 4 cut(s) 68, 99, 210, 424
BspFNI CGCG 6 cut(s) 187, 194, 286, 546, 993, 1002
BspLI GGNNCC 2 cut(s) 180, 218
BspPI GGATC 2 cut(s) 296, 991
BspQI GCTCTTC 1 cut(s) 956
BspT107I GGYRCC 1 cut(s) 178
BsrBI CCGCTC 1 cut(s) 249
BsrFI RCCGGY 3 cut(s) 595, 712, 1004
BsrI ACTGG 1 cut(s) 543
BssAI RCCGGY 3 cut(s) 595, 712, 1004
BssECI CCNNGG 5 cut(s) 185, 442, 443, 604, 910
BssMI GATC 2 cut(s) 301, 996
BssNI GRCGYC 1 cut(s) 758
BssT1I CCWWGG 1 cut(s) 910
Bst2UI CCWGG 1 cut(s) 605
Bst4CI ACNGT 3 cut(s) 238, 370, 388
Bst6I CTCTTC 1 cut(s) 956
BstACI GRCGYC 1 cut(s) 758
BstBAI YACGTR 1 cut(s) 427
BstC8I GCNNGC 5 cut(s) 192, 224, 714, 718, 1006
BstDEI CTNAG 5 cut(s) 55, 107, 138, 197, 411
BstDSI CCRYGG 1 cut(s) 185
BstF5I GGATG 3 cut(s) 502, 532, 969
BstFNI CGCG 6 cut(s) 187, 194, 286, 546, 993, 1002
BstHHI GCGC 2 cut(s) 196, 1004
BstKTI GATC 2 cut(s) 304, 999
BstMBI GATC 2 cut(s) 301, 996
BstMWI GCNNNNNNNGC 6 cut(s) 148, 193, 202, 722, 829, 999
BstNI CCWGG 1 cut(s) 605
BstNSI RCATGY 1 cut(s) 842
BstSCI CCNGG 3 cut(s) 442, 443, 603
BstUI CGCG 6 cut(s) 187, 194, 286, 546, 993, 1002
BstV1I GCAGC 2 cut(s) 457, 487
BstV2I GAAGAC 2 cut(s) 310, 753
BsuI GTATCC 1 cut(s) 811
BsuRI GGCC 3 cut(s) 289, 630, 697
BtgI CCRYGG 1 cut(s) 185
BtrI CACGTC 1 cut(s) 243
BtsCI GGATG 3 cut(s) 502, 532, 969
BtsIMutI CAGTG 2 cut(s) 380, 654
Cac8I GCNNGC 5 cut(s) 192, 224, 714, 718, 1006
CfoI GCGC 2 cut(s) 196, 1004
Cfr10I RCCGGY 3 cut(s) 595, 712, 1004
Cfr13I GGNCC 3 cut(s) 216, 266, 628
Cfr42I CCGCGG 1 cut(s) 188
Cfr9I CCCGGG 1 cut(s) 443
CseI GACGC 2 cut(s) 367, 535
Csp6I GTAC 4 cut(s) 424, 578, 808, 903
CspCI CAANNNNNGTGG 1 cut(s) 36
CviAII CATG 4 cut(s) 291, 331, 805, 839
CviQI GTAC 4 cut(s) 424, 578, 808, 903
DdeI CTNAG 5 cut(s) 55, 107, 138, 197, 411
DpnI GATC 2 cut(s) 303, 998
DpnII GATC 2 cut(s) 301, 996
EaeI YGGCCR 1 cut(s) 287
Eam1104I CTCTTC 1 cut(s) 956
EarI CTCTTC 1 cut(s) 956
Eco130I CCWWGG 1 cut(s) 910
Eco147I AGGCCT 1 cut(s) 697
Eco24I GRGCYC 2 cut(s) 410, 443
Eco47I GGWCC 2 cut(s) 216, 266
Eco57I CTGAAG 2 cut(s) 854, 875
Eco88I CYCGRG 2 cut(s) 143, 443
EcoO109I RGGNCCY 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 603
EcoT14I CCWWGG 1 cut(s) 910
EcoT38I GRGCYC 2 cut(s) 410, 443
ErhI CCWWGG 1 cut(s) 910
FaeI CATG 4 cut(s) 294, 334, 808, 842
FaqI GGGAC 1 cut(s) 41
FatI CATG 4 cut(s) 290, 330, 804, 838
FauI CCCGC 1 cut(s) 227
FblI GTMKAC 2 cut(s) 451, 854
Fnu4HI GCNGC 8 cut(s) 177, 185, 188, 227, 247, 287, 471, 501
FokI GGATG 3 cut(s) 509, 539, 956
FriOI GRGCYC 2 cut(s) 410, 443
Fsp4HI GCNGC 8 cut(s) 177, 185, 188, 227, 247, 287, 471, 501
FspBI CTAG 2 cut(s) 858, 1009
GlaI GCGC 2 cut(s) 195, 1003
GluI GCNGC 8 cut(s) 177, 185, 188, 227, 247, 287, 471, 501
GsaI CCCAGC 1 cut(s) 71
GsuI CTGGAG 1 cut(s) 953
HaeIII GGCC 3 cut(s) 289, 630, 697
HapII CCGG 5 cut(s) 395, 444, 596, 713, 1005
HgaI GACGC 2 cut(s) 367, 535
HhaI GCGC 2 cut(s) 196, 1004
Hin1I GRCGYC 1 cut(s) 758
Hin1II CATG 4 cut(s) 294, 334, 808, 842
Hin6I GCGC 2 cut(s) 194, 1002
HinP1I GCGC 2 cut(s) 194, 1002
HincII GTYRAC 2 cut(s) 452, 855
HindII GTYRAC 2 cut(s) 452, 855
HinfI GANTC 3 cut(s) 95, 448, 885
HpaII CCGG 5 cut(s) 395, 444, 596, 713, 1005
HphI GGTGA 4 cut(s) 250, 430, 665, 784
Hpy166II GTNNAC 4 cut(s) 366, 452, 855, 903
Hpy188I TCNGA 8 cut(s) 50, 108, 257, 280, 306, 414, 643, 789
Hpy188III TCNNGA 5 cut(s) 145, 322, 382, 736, 863
Hpy8I GTNNAC 4 cut(s) 366, 452, 855, 903
Hpy99I CGWCG 3 cut(s) 159, 383, 730
HpyAV CCTTC 6 cut(s) 82, 257, 266, 320, 352, 899
HpyCH4III ACNGT 3 cut(s) 238, 370, 388
HpyCH4IV ACGT 6 cut(s) 14, 242, 426, 758, 798, 828
HpyCH4V TGCA 1 cut(s) 294
HpyF10VI GCNNNNNNNGC 6 cut(s) 148, 193, 202, 722, 829, 999
HpyF3I CTNAG 5 cut(s) 55, 107, 138, 197, 411
HpySE526I ACGT 6 cut(s) 14, 242, 426, 758, 798, 828
Hsp92I GRCGYC 1 cut(s) 758
Hsp92II CATG 4 cut(s) 294, 334, 808, 842
HspAI GCGC 2 cut(s) 194, 1002
KroI GCCGGC 2 cut(s) 712, 1004
KroNI GCCGGC 2 cut(s) 714, 1006
KspI CCGCGG 1 cut(s) 188
Kzo9I GATC 2 cut(s) 301, 996
LguI GCTCTTC 1 cut(s) 956
LmnI GCTCC 3 cut(s) 156, 923, 934
Lsp1109I GCAGC 2 cut(s) 457, 487
LweI GCATC 2 cut(s) 487, 936
MaeI CTAG 2 cut(s) 858, 1009
MaeII ACGT 6 cut(s) 14, 242, 426, 758, 798, 828
MaeIII GTNAC 2 cut(s) 238, 382
MalI GATC 2 cut(s) 303, 998
MbiI CCGCTC 1 cut(s) 249
MboI GATC 2 cut(s) 301, 996
MboII GAAGA 5 cut(s) 136, 310, 337, 753, 943
MfeI CAATTG 1 cut(s) 6
MhlI GDGCHC 2 cut(s) 410, 443
MluCI AATT 9 cut(s) 6, 258, 340, 463, 739, 747, 814, 845, 964
MlyI GAGTC 1 cut(s) 457
MroNI GCCGGC 2 cut(s) 712, 1004
MroXI GAANNNNTTC 1 cut(s) 362
MseI TTAA 2 cut(s) 339, 486
MspA1I CMGCKG 1 cut(s) 187
MspI CCGG 5 cut(s) 395, 444, 596, 713, 1005
MspR9I CCNGG 3 cut(s) 444, 445, 605
MunI CAATTG 1 cut(s) 6
MvaI CCWGG 1 cut(s) 605
MvnI CGCG 6 cut(s) 187, 194, 286, 546, 993, 1002
MwoI GCNNNNNNNGC 6 cut(s) 148, 193, 202, 722, 829, 999
NaeI GCCGGC 2 cut(s) 714, 1006
NciI CCSGG 2 cut(s) 444, 445
NdeII GATC 2 cut(s) 301, 996
NgoMIV GCCGGC 2 cut(s) 712, 1004
NlaIII CATG 4 cut(s) 294, 334, 808, 842
NlaIV GGNNCC 2 cut(s) 180, 218
NmeAIII GCCGAG 1 cut(s) 231
NmuCI GTSAC 2 cut(s) 238, 382
NspI RCATGY 1 cut(s) 842
PaeR7I CTCGAG 1 cut(s) 143
PceI AGGCCT 1 cut(s) 697
PciSI GCTCTTC 1 cut(s) 956
PdiI GCCGGC 2 cut(s) 714, 1006
PdmI GAANNNNTTC 1 cut(s) 362
PfeI GAWTC 2 cut(s) 95, 885
PkrI GCNGC 8 cut(s) 178, 186, 189, 228, 248, 288, 472, 502
PleI GAGTC 1 cut(s) 456
PpsI GAGTC 1 cut(s) 456
Ppu21I YACGTR 1 cut(s) 427
PpuMI RGGWCCY 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 603
PspFI CCCAGC 1 cut(s) 67
PspGI CCWGG 1 cut(s) 603
PspN4I GGNNCC 2 cut(s) 180, 218
PspPI GGNCC 3 cut(s) 216, 266, 628
PspPPI RGGWCCY 1 cut(s) 216
RsaI GTAC 4 cut(s) 425, 579, 809, 904
RsaNI GTAC 4 cut(s) 424, 578, 808, 903
SacII CCGCGG 1 cut(s) 188
SalI GTCGAC 2 cut(s) 450, 853
SapI GCTCTTC 1 cut(s) 956
SaqAI TTAA 2 cut(s) 339, 486
SatI GCNGC 8 cut(s) 177, 185, 188, 227, 247, 287, 471, 501
Sau3AI GATC 2 cut(s) 301, 996
Sau96I GGNCC 3 cut(s) 216, 266, 628
ScaI AGTACT 1 cut(s) 579
SchI GAGTC 1 cut(s) 457
ScrFI CCNGG 3 cut(s) 444, 445, 605
SduI GDGCHC 2 cut(s) 410, 443
SfaNI GCATC 2 cut(s) 487, 936
Sfr274I CTCGAG 1 cut(s) 143
Sfr303I CCGCGG 1 cut(s) 188
SgrBI CCGCGG 1 cut(s) 188
SinI GGWCC 2 cut(s) 216, 266
SlaI CTCGAG 1 cut(s) 143
SmaI CCCGGG 1 cut(s) 445
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SpeI ACTAGT 1 cut(s) 857
Sse9I AATT 9 cut(s) 6, 258, 340, 463, 739, 747, 814, 845, 964
SseBI AGGCCT 1 cut(s) 697
SspMI CTAG 2 cut(s) 858, 1009
StuI AGGCCT 1 cut(s) 697
StyD4I CCNGG 3 cut(s) 442, 443, 603
StyI CCWWGG 1 cut(s) 910
TaaI ACNGT 3 cut(s) 238, 370, 388
TaiI ACGT 6 cut(s) 17, 245, 429, 761, 801, 831
TaqI TCGA 5 cut(s) 144, 451, 505, 768, 854
TasI AATT 9 cut(s) 6, 258, 340, 463, 739, 747, 814, 845, 964
TatI WGTACW 2 cut(s) 577, 902
TauI GCSGC 6 cut(s) 179, 187, 190, 229, 249, 289
TfiI GAWTC 2 cut(s) 95, 885
Tru1I TTAA 2 cut(s) 339, 486
Tru9I TTAA 2 cut(s) 339, 486
TscAI CASTG 2 cut(s) 380, 661
TseFI GTSAC 2 cut(s) 238, 382
TseI GCWGC 2 cut(s) 470, 500
Tsp45I GTSAC 2 cut(s) 238, 382
TspDTI ATGAA 2 cut(s) 23, 753
TspGWI ACGGA 2 cut(s) 143, 672
TspMI CCCGGG 1 cut(s) 443
TspRI CASTG 2 cut(s) 380, 661
VpaK11BI GGWCC 2 cut(s) 216, 266
XapI RAATTY 1 cut(s) 739
XceI RCATGY 1 cut(s) 842
XcmI CCANNNNNNNNNTGG 1 cut(s) 917
XhoI CTCGAG 1 cut(s) 143
XmaI CCCGGG 1 cut(s) 443
XmiI GTMKAC 2 cut(s) 451, 854
XmnI GAANNNNTTC 1 cut(s) 362
XspI CTAG 2 cut(s) 858, 1009
ZraI GACGTC 1 cut(s) 759
ZrmI AGTACT 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.