Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001714

Physical Location & Seq

Genomic Coordinates Reverse (-)

6390693 .. 6395738

Gene Structure 5046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G055000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

AGTCAAGTTGGAACTATCTTTAAGCAGTTCTTGTTATCTGAAGGCTTTTTCGAAATCCACACGCCAAAACTTACTGCTGGTTCAAGTGAAGGCGGTGCTGCTGTGTTTAGACTCGACTACAACGGTCAACCTGATTGCCTAGCCCAATCACCCCAGCTTTATAAACAGATGGCCATCTGTGGTGACTTTGGCCGTGTTTTTGAGATTGGTGGTAGTTATAGAGCCGAGAACTCACATACCCATAGGCATTTGTGTGAATTTACTGGTCTTGATGTTGAAATGGAGATTGATTGGCACTATTCTGAGGTGATGGATATTGTTGACCGTTTATTTGTTGCAATATTTGACACTTTGAATAAAACTTGTCAAATGGACCTCGAAGCAGTGGGGAGGCAGTATCCGTTTGAACCATTGAAGTACTTGCCGGAAACTTTACGACTTACATTCGAAGAAGGTGTTCAAATGCTTAAGGATGATGGCGTTGAAGTGGATCCTATGGGGGACCTTAATACTGAGGCTAAGAGAAAACTAGCGCAACTGGTTCTGGAGAAGTACGGCACTGAGTTCTACATACTGCACCGATATCCTTTGGATGTTAGGCCATTCTATACGATGCCTTGCCACGACAATCCTGCCTACAGTAATTCATTTGATGTTTTTATTCGAGGTGAGGAGATAATTTCTGGCGCCCAGCGTGTGCACGTACTAGAGTTACTAGAGGAAAGGGCACAAGCATGTGGCATTGAATTGAAAACAATTTCATCATATATCGATGCTTTTAGATACGGTTCACCTCCGCATGGTGGGTTCGGTGTAGGGCTGGAGTGTGTTGTCATGCTTTTCTGTGGTTTGAACAACATCCGCAAAACTTCTCTGTTCCCTCGTGATCCAGATAGGCTTGCCCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006422 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045202 GO:0046483 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0098542 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2 tRNA_anti-codon

Protein Analysis

303

Amino Acids

34.24

Weight (kDa)

4.97

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26870 AT4G31180 AT4G31180
fragaria_vesca	FvH4_2g15870 FvH4_2g15910 FvH4_2g30550
malus_domestica	MD08G1134400.v1.1 MD12G1153800.v1.1 MD14G1143300.v1.1 MD15G1113400.v1.1
prunus_persica	Prupe.1G463800_v2.0.a1 Prupe.4G141600_v2.0.a1 Prupe.8G055000_v2.0.a1
pyrus_communis	pycom08g11340 pycom15g10170 pycom16g11710
rosa_chinensis	RchiOBHm_Chr5g0032141 RchiOBHm_Chr5g0032161 RchiOBHm_Chr6g0278871 RchiOBHm_Chr6g0312531
rosa_laevigata	RLG00000010321 RLG00000033368
rosa_multiflora	Rmu_co8427103.1_g000001 Rmu_sc0003031.1_g000023 Rmu_sc0005375.1_g000002 Rmu_sc0005375.1_g000011 Rmu_sc0008363.1_g000011 Rmu_sc0043080.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048240 Rroxscaffold_1G00048270 Rroxscaffold_7G00156770
rosa_rugosa	Rorug06G0119800 Rorug06G0120000 Rorug06G0123400 Rorug06G0396100 Rorug06G0396200
rosa_samantha	Rh5DG228900 Rh6AG228300 Rh6AG513500 Rh6BG233900 Rh6BG234000 Rh6BG524200 Rh6BG526500 Rh6CG236300 Rh6CG531400 Rh6DG515600
rosa_wichuraiana	Rw6G020030 Rw6G044650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	162
AccB1I	GGYRCC	1 cut(s)	686
AciI	CCGC	3 cut(s)	93, 797, 862
AclWI	GGATC	3 cut(s)	485, 498, 881
AcoI	YGGCCR	2 cut(s)	171, 190
AcsI	RAATTY	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	60
AcyI	GRCGYC	1 cut(s)	687
AfaI	GTAC	3 cut(s)	419, 554, 705
AfiI	CCNNNNNNNGG	2 cut(s)	800, 803
AflII	CTTAAG	1 cut(s)	467
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
Alw21I	GWGCWC	1 cut(s)	702
Alw44I	GTGCAC	1 cut(s)	698
AlwI	GGATC	3 cut(s)	485, 498, 881
AoxI	GGCC	3 cut(s)	171, 190, 599
ApaLI	GTGCAC	1 cut(s)	698
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	257
ArsI	GACNNNNNNTTYG	2 cut(s)	314, 346
Asp700I	GAANNNNTTC	1 cut(s)	456
AspLEI	GCGC	2 cut(s)	535, 689
AspS9I	GGNCC	2 cut(s)	373, 502
AsuHPI	GGTGA	5 cut(s)	141, 194, 319, 680, 783
AsuII	TTCGAA	2 cut(s)	51, 447
AvaII	GGWCC	2 cut(s)	373, 502
BaeGI	GKGCMC	2 cut(s)	702, 730
BalI	TGGCCA	1 cut(s)	173
BamHI	GGATCC	1 cut(s)	490
BanI	GGYRCC	1 cut(s)	686
BauI	CACGAG	1 cut(s)	882
Bbv12I	GWGCWC	1 cut(s)	702
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	4 cut(s)	163, 182, 304, 470
BceAI	ACGGC	2 cut(s)	177, 571
BcgI	CGANNNNNNTGC	2 cut(s)	614, 648
BciVI	GTATCC	1 cut(s)	408
BfaI	CTAG	4 cut(s)	140, 530, 707, 716
BfmI	CTRYAG	1 cut(s)	637
BfoI	RGCGCY	1 cut(s)	690
BfrI	CTTAAG	1 cut(s)	467
BfuI	GTATCC	1 cut(s)	408
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
BmcAI	AGTACT	1 cut(s)	419
Bme18I	GGWCC	2 cut(s)	373, 502
BmgT120I	GGNCC	2 cut(s)	373, 502
BmiI	GGNNCC	3 cut(s)	492, 503, 688
BmsI	GCATC	2 cut(s)	603, 763
BpmI	CTGGAG	2 cut(s)	566, 842
Bpu14I	TTCGAA	2 cut(s)	51, 447
Bsa29I	ATCGAT	1 cut(s)	771
BsaAI	YACGTR	1 cut(s)	703
BsaBI	GATNNNNATC	1 cut(s)	173
BsaHI	GRCGYC	1 cut(s)	687
Bsc4I	CCNNNNNNNGG	2 cut(s)	800, 803
Bse1I	ACTGG	2 cut(s)	268, 543
Bse8I	GATNNNNATC	1 cut(s)	173
BseCI	ATCGAT	1 cut(s)	771
BseGI	GGATG	3 cut(s)	478, 598, 858
BseJI	GATNNNNATC	1 cut(s)	173
BseLI	CCNNNNNNNGG	2 cut(s)	800, 803
BseMII	CTCAG	3 cut(s)	294, 504, 552
BseNI	ACTGG	2 cut(s)	268, 543
BseRI	GAGGAG	1 cut(s)	686
BseSI	GKGCMC	2 cut(s)	702, 730
BseXI	GCAGC	1 cut(s)	85
BseYI	CCCAGC	2 cut(s)	153, 690
BsgI	GTGCAG	1 cut(s)	560
BshFI	GGCC	3 cut(s)	173, 192, 601
BshNI	GGYRCC	1 cut(s)	686
BshVI	ATCGAT	1 cut(s)	771
BsiHKAI	GWGCWC	1 cut(s)	702
BsiSI	CCGG	1 cut(s)	425
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	2 cut(s)	800, 803
BsmFI	GGGAC	1 cut(s)	515
BsnI	GGCC	3 cut(s)	173, 192, 601
Bsp119I	TTCGAA	2 cut(s)	51, 447
Bsp1286I	GDGCHC	2 cut(s)	702, 730
Bsp143I	GATC	2 cut(s)	490, 886
BspACI	CCGC	3 cut(s)	93, 797, 862
BspANI	GGCC	3 cut(s)	173, 192, 601
BspCNI	CTCAG	3 cut(s)	295, 505, 553
BspDI	ATCGAT	1 cut(s)	771
BspLI	GGNNCC	3 cut(s)	492, 503, 688
BspPI	GGATC	3 cut(s)	485, 498, 881
BspT104I	TTCGAA	2 cut(s)	51, 447
BspT107I	GGYRCC	1 cut(s)	686
BspTI	CTTAAG	1 cut(s)	467
BsrI	ACTGG	2 cut(s)	268, 543
BssMI	GATC	2 cut(s)	490, 886
BssNI	GRCGYC	1 cut(s)	687
BssSI	CACGAG	1 cut(s)	882
Bst2BI	CACGAG	1 cut(s)	882
Bst4CI	ACNGT	4 cut(s)	125, 326, 641, 788
BstACI	GRCGYC	1 cut(s)	687
BstAFI	CTTAAG	1 cut(s)	467
BstBAI	YACGTR	1 cut(s)	703
BstBI	TTCGAA	2 cut(s)	51, 447
BstC8I	GCNNGC	1 cut(s)	900
BstDEI	CTNAG	5 cut(s)	303, 513, 519, 561, 906
BstF5I	GGATG	3 cut(s)	478, 598, 858
BstH2I	RGCGCY	1 cut(s)	690
BstHHI	GCGC	2 cut(s)	535, 689
BstKTI	GATC	2 cut(s)	493, 889
BstMBI	GATC	2 cut(s)	490, 886
BstNSI	RCATGY	1 cut(s)	738
BstSFI	CTRYAG	1 cut(s)	637
BstSLI	GKGCMC	2 cut(s)	702, 730
BstV1I	GCAGC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
Bsu15I	ATCGAT	1 cut(s)	771
BsuI	GTATCC	1 cut(s)	408
BsuRI	GGCC	3 cut(s)	173, 192, 601
BsuTUI	ATCGAT	1 cut(s)	771
BtsCI	GGATG	3 cut(s)	478, 598, 858
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	2 cut(s)	390, 558
Cac8I	GCNNGC	1 cut(s)	900
CfoI	GCGC	2 cut(s)	535, 689
Cfr13I	GGNCC	2 cut(s)	373, 502
ClaI	ATCGAT	1 cut(s)	771
Csp6I	GTAC	3 cut(s)	418, 553, 704
CviAII	CATG	3 cut(s)	735, 800, 835
CviQI	GTAC	3 cut(s)	418, 553, 704
DdeI	CTNAG	5 cut(s)	303, 513, 519, 561, 906
DinI	GGCGCC	1 cut(s)	688
DpnI	GATC	2 cut(s)	492, 888
DpnII	GATC	2 cut(s)	490, 886
EaeI	YGGCCR	2 cut(s)	171, 190
Eco32I	GATATC	1 cut(s)	584
Eco47I	GGWCC	2 cut(s)	373, 502
Eco57I	CTGAAG	1 cut(s)	60
EcoO109I	RGGNCCY	1 cut(s)	502
EcoRV	GATATC	1 cut(s)	584
EgeI	GGCGCC	1 cut(s)	688
EheI	GGCGCC	1 cut(s)	688
FaeI	CATG	3 cut(s)	738, 803, 838
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FaqI	GGGAC	1 cut(s)	515
FatI	CATG	3 cut(s)	734, 799, 834
Fnu4HI	GCNGC	1 cut(s)	99
FokI	GGATG	3 cut(s)	485, 605, 845
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	4 cut(s)	140, 530, 707, 716
GlaI	GCGC	2 cut(s)	534, 688
GluI	GCNGC	1 cut(s)	99
GsaI	CCCAGC	2 cut(s)	157, 694
GsuI	CTGGAG	2 cut(s)	566, 842
HaeII	RGCGCY	1 cut(s)	690
HaeIII	GGCC	3 cut(s)	173, 192, 601
HapII	CCGG	1 cut(s)	425
HhaI	GCGC	2 cut(s)	535, 689
Hin1I	GRCGYC	1 cut(s)	687
Hin1II	CATG	3 cut(s)	738, 803, 838
Hin6I	GCGC	2 cut(s)	533, 687
HinP1I	GCGC	2 cut(s)	533, 687
HincII	GTYRAC	2 cut(s)	128, 322
HindII	GTYRAC	2 cut(s)	128, 322
HinfI	GANTC	1 cut(s)	111
HpaII	CCGG	1 cut(s)	425
HphI	GGTGA	5 cut(s)	141, 194, 319, 680, 783
Hpy166II	GTNNAC	4 cut(s)	128, 322, 700, 791
Hpy188I	TCNGA	2 cut(s)	40, 304
Hpy188III	TCNNGA	4 cut(s)	269, 545, 884, 890
Hpy8I	GTNNAC	4 cut(s)	128, 322, 700, 791
HpyAV	CCTTC	3 cut(s)	35, 83, 446
HpyCH4III	ACNGT	4 cut(s)	125, 326, 641, 788
HpyCH4IV	ACGT	1 cut(s)	702
HpyCH4V	TGCA	3 cut(s)	338, 577, 700
HpyF3I	CTNAG	5 cut(s)	303, 513, 519, 561, 906
HpySE526I	ACGT	1 cut(s)	702
Hsp92I	GRCGYC	1 cut(s)	687
Hsp92II	CATG	3 cut(s)	738, 803, 838
HspAI	GCGC	2 cut(s)	533, 687
KasI	GGCGCC	1 cut(s)	686
Kzo9I	GATC	2 cut(s)	490, 886
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	2 cut(s)	603, 763
MaeI	CTAG	4 cut(s)	140, 530, 707, 716
MaeII	ACGT	1 cut(s)	702
MaeIII	GTNAC	2 cut(s)	182, 711
MalI	GATC	2 cut(s)	492, 888
MboI	GATC	2 cut(s)	490, 886
MboII	GAAGA	1 cut(s)	461
MflI	RGATCY	1 cut(s)	490
MhlI	GDGCHC	2 cut(s)	702, 730
MlsI	TGGCCA	1 cut(s)	173
MluCI	AATT	5 cut(s)	257, 643, 678, 746, 756
MluNI	TGGCCA	1 cut(s)	173
Mly113I	GGCGCC	1 cut(s)	687
MlyI	GAGTC	1 cut(s)	105
MnlI	CCTC	9 cut(s)	298, 384, 386, 508, 659, 664, 712, 804, 891
Mox20I	TGGCCA	1 cut(s)	173
MroXI	GAANNNNTTC	1 cut(s)	456
MscI	TGGCCA	1 cut(s)	173
MseI	TTAA	3 cut(s)	21, 468, 507
MslI	CAYNNNNRTG	2 cut(s)	252, 733
Msp20I	TGGCCA	1 cut(s)	173
MspCI	CTTAAG	1 cut(s)	467
MspI	CCGG	1 cut(s)	425
NarI	GGCGCC	1 cut(s)	687
NdeII	GATC	2 cut(s)	490, 886
NlaIII	CATG	3 cut(s)	738, 803, 838
NlaIV	GGNNCC	3 cut(s)	492, 503, 688
NmeAIII	GCCGAG	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	182
NspI	RCATGY	1 cut(s)	738
NspV	TTCGAA	2 cut(s)	51, 447
PdmI	GAANNNNTTC	1 cut(s)	456
PkrI	GCNGC	1 cut(s)	100
PleI	GAGTC	1 cut(s)	105
PluTI	GGCGCC	1 cut(s)	690
PpsI	GAGTC	1 cut(s)	105
Ppu21I	YACGTR	1 cut(s)	703
PpuMI	RGGWCCY	1 cut(s)	502
PsiI	TTATAA	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	502
PspFI	CCCAGC	2 cut(s)	153, 690
PspN4I	GGNNCC	3 cut(s)	492, 503, 688
PspPI	GGNCC	2 cut(s)	373, 502
PspPPI	RGGWCCY	1 cut(s)	502
PsuI	RGATCY	1 cut(s)	490
RsaI	GTAC	3 cut(s)	419, 554, 705
RsaNI	GTAC	3 cut(s)	418, 553, 704
RseI	CAYNNNNRTG	2 cut(s)	252, 733
SaqAI	TTAA	3 cut(s)	21, 468, 507
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	2 cut(s)	490, 886
Sau96I	GGNCC	2 cut(s)	373, 502
ScaI	AGTACT	1 cut(s)	419
SchI	GAGTC	1 cut(s)	105
SduI	GDGCHC	2 cut(s)	702, 730
SetI	ASST	9 cut(s)	133, 159, 309, 378, 457, 507, 670, 705, 796
SfaNI	GCATC	2 cut(s)	603, 763
SfcI	CTRYAG	1 cut(s)	637
SfoI	GGCGCC	1 cut(s)	688
SfuI	TTCGAA	2 cut(s)	51, 447
SinI	GGWCC	2 cut(s)	373, 502
SmiMI	CAYNNNNRTG	2 cut(s)	252, 733
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
Sse9I	AATT	5 cut(s)	257, 643, 678, 746, 756
SsiI	CCGC	3 cut(s)	93, 797, 862
SspDI	GGCGCC	1 cut(s)	686
SspI	AATATT	1 cut(s)	342
SspMI	CTAG	4 cut(s)	140, 530, 707, 716
TaaI	ACNGT	4 cut(s)	125, 326, 641, 788
TaiI	ACGT	1 cut(s)	705
TaqI	TCGA	6 cut(s)	51, 114, 378, 447, 664, 771
TasI	AATT	5 cut(s)	257, 643, 678, 746, 756
TatI	WGTACW	1 cut(s)	417
Tru1I	TTAA	3 cut(s)	21, 468, 507
Tru9I	TTAA	3 cut(s)	21, 468, 507
TscAI	CASTG	2 cut(s)	390, 565
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	2 cut(s)	636, 750
TspGWI	ACGGA	1 cut(s)	390
TspRI	CASTG	2 cut(s)	390, 565
Vha464I	CTTAAG	1 cut(s)	467
VneI	GTGCAC	1 cut(s)	698
VpaK11BI	GGWCC	2 cut(s)	373, 502
XapI	RAATTY	1 cut(s)	257
XceI	RCATGY	1 cut(s)	738
XmnI	GAANNNNTTC	1 cut(s)	456
XspI	CTAG	4 cut(s)	140, 530, 707, 716
ZrmI	AGTACT	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.