Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001714

Physical Location & Seq

Genomic Coordinates Reverse (-)

684786 .. 687815

Gene Structure 3030 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00156770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1641 bp

ATGTCAGAACCTCAGCCACCTTCCGAGCCCACCCAGGAGCCAGAGAACGAGGAGTCCGCCTCACTCAGCAAAAAGGCCGCCAAGAAAGAAGCCGCCAAGCTCGAGAAGCTCCGGCGCCGCCAGGAGCAAGAAGCGGCGGCGGCGGCTGCTGCTAGCGCTGAGTCCGCCGAGCCGGAGGACCCGCTCGCCGCCAACTACGGCGACTTGCCGCTCATTCAGCTCCAATCTATGAGGATCGCCGACGTCAACGACTGGACGGAGGTCGGGGCGCTGACGGAGGCGTTGAAGGACCAGAAGGTTCTGATACGCGGCCGCGCGCAGACGATCCGAGCCGTGGGGAAGAACATGGCGTTTATTGTCGTCAGAGAGAAGGGCTTCACGGTTCAGTGCGTCGCCACGGTGCAGCCGGAGATTGTCAGCCGTCAGATGGTCAAGTACGTGGCGGCGTTGAACCGCGAGTCCATTATTGACATTGAAGGGATTGTGTCTGTTCCTGGTGTGGCAATTAAAGGCGCTTCGCAGCAGGTGGAGGTGCAAGTCAGAAAGTTGTACTGTATAAGTAAGGCGGCTGTTTTGCCTATCAACATTGAGGACGCTGCTCGAAGTGATGCCGAAATTGAAAAAGCTAATCAGGCTGGAGAACAATTGGTTCGTGTAAATCAGGATACTCGCTTGAACTTCCGAGTACTTGACTTGCGAACACCGGCTAACCAGGGGATTTTCCGAATCCAGAGTCAAGTTGGAACTATCTTCAGGCAGTTCTTGCTGTCTGAAGGCTTTTTTGAAATCCACTCACCAAAACTGATCGCTGGTTCAAGTGAGGGTGGGGCTTCGGTGTTTAAACTGGACTACAAGGGGCAACCTGCCTGCCTTGCCCAGTCACCGCAGCTCCACAAGCAGATGGCCATCTGTGGTGACTTTGGTCGTATTTTTGAGATTGGTCCTGTTTTCAGAGCTGAGGACTCCTATACACATAGGCATCTATGTGAGTTCACTGGTCTCGATATTGAGATGGAGATTAAGTGGAGCTATTTTGAGGTTATGGATATTGTTAGCAGGTTGTTTGTTACTATGTTTGACTATTTGAACAAAAATTGTGAGAAGGAACTTGAAGCTGTACGGAGGCAGTATCCCTTCGAACCACTAAAGTACTTGCCTGAGACTCTACGACTCACTTTTGCGGAAGGTGTTCAAATGCTGAAGGATGCTGGTGTCGAAGTAGATCCTATGGGGGACCTAAATACTGAAGCAGAGAGGAAGTTGGGCCAATTAGTTTTGGAAAAATATGGCACTGAGTTCTACATACTTCACCGCTATCCGTTGGCTGTGAGGCCTTTCTATACCATGCCTTGCTGTGACAATAAGGAGTACAGTAATTCATTTGATGTCTTCATTCGAGGTGAGGAGATTATATCAGGTGCGCAACGTATCCATGTACCAGAGTTCTTGGCTGAACGTGCTGAAGCACGTGGAATTGAAGTCAAGACAATATCAACATATATTGATTCCTTCAGATATGGTGCACCTCCCCATGGTGGATTTGGAGTAGGGCTGGAGCGTGTTGTGATGCTCTTCTGTGGTTTGAATAACATCCGCAAAACATCCTTATTCCCGCGTGATCCGCTCCGGCTAGCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006422 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045202 GO:0046483 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0098542 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2 tRNA_anti-codon

Protein Analysis

546

Amino Acids

61.17

Weight (kDa)

5.6

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2	PF00152	220 - 540	1.5e-77	tRNA synthetases class II (D, K and N)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26870 AT4G31180 AT4G31180
fragaria_vesca	FvH4_2g15870 FvH4_2g15910 FvH4_2g30550
malus_domestica	MD08G1134400.v1.1 MD12G1153800.v1.1 MD14G1143300.v1.1 MD15G1113400.v1.1
prunus_persica	Prupe.1G463800_v2.0.a1 Prupe.4G141600_v2.0.a1 Prupe.8G055000_v2.0.a1
pyrus_communis	pycom08g11340 pycom15g10170 pycom16g11710
rosa_chinensis	RchiOBHm_Chr5g0032141 RchiOBHm_Chr5g0032161 RchiOBHm_Chr6g0278871 RchiOBHm_Chr6g0312531
rosa_laevigata	RLG00000010321 RLG00000033368
rosa_multiflora	Rmu_co8427103.1_g000001 Rmu_sc0003031.1_g000023 Rmu_sc0005375.1_g000002 Rmu_sc0005375.1_g000011 Rmu_sc0008363.1_g000011 Rmu_sc0043080.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048240 Rroxscaffold_1G00048270 Rroxscaffold_7G00156770
rosa_rugosa	Rorug06G0119800 Rorug06G0120000 Rorug06G0123400 Rorug06G0396100 Rorug06G0396200
rosa_samantha	Rh5DG228900 Rh6AG228300 Rh6AG513500 Rh6BG233900 Rh6BG234000 Rh6BG524200 Rh6BG526500 Rh6CG236300 Rh6CG531400 Rh6DG515600
rosa_wichuraiana	Rw6G020030 Rw6G044650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	514
AatII	GACGTC	1 cut(s)	246
Acc16I	TGCGCA	1 cut(s)	1422
Acc36I	ACCTGC	3 cut(s)	514, 871, 1047
AccB1I	GGYRCC	1 cut(s)	114
AccBSI	CCGCTC	3 cut(s)	184, 211, 1624
AccII	CGCG	5 cut(s)	309, 315, 317, 456, 1615
AclWI	GGATC	4 cut(s)	242, 319, 1217, 1613
AcoI	YGGCCR	2 cut(s)	310, 903
AcuI	CTGAAG	6 cut(s)	736, 792, 1220, 1266, 1482, 1495
AcvI	CACGTG	1 cut(s)	1469
AcyI	GRCGYC	2 cut(s)	115, 243
AfaI	GTAC	7 cut(s)	437, 551, 687, 1119, 1151, 1370, 1437
AfeI	AGCGCT	1 cut(s)	157
AfiI	CCNNNNNNNGG	4 cut(s)	334, 427, 1532, 1535
AjnI	CCWGG	4 cut(s)	33, 120, 493, 711
AloI	GAACNNNNNNTCC	4 cut(s)	38, 70, 443, 475
AluBI	AGCT	9 cut(s)	100, 109, 220, 626, 889, 956, 1029, 1115, 1634
AluI	AGCT	9 cut(s)	100, 109, 220, 626, 889, 956, 1029, 1115, 1634
Alw21I	GWGCWC	1 cut(s)	1525
Alw26I	GTCTC	2 cut(s)	1004, 1154
Alw44I	GTGCAC	1 cut(s)	1521
AlwI	GGATC	4 cut(s)	242, 319, 1217, 1613
Ama87I	CYCGRG	1 cut(s)	101
Aor51HI	AGCGCT	1 cut(s)	157
AoxI	GGCC	5 cut(s)	75, 310, 903, 1264, 1331
ApaLI	GTGCAC	1 cut(s)	1521
ApeKI	GCWGC	6 cut(s)	146, 149, 403, 520, 596, 886
ArsI	GACNNNNNNTTYG	2 cut(s)	718, 750
Asp700I	GAANNNNTTC	2 cut(s)	374, 1188
AspLEI	GCGC	7 cut(s)	117, 158, 271, 317, 319, 515, 1423
AspS9I	GGNCC	5 cut(s)	178, 289, 941, 1234, 1264
AsuHPI	GGTGA	5 cut(s)	786, 873, 926, 1301, 1412
AsuII	TTCGAA	1 cut(s)	1137
AsuNHI	GCTAGC	2 cut(s)	152, 1630
AvaI	CYCGRG	1 cut(s)	101
AvaII	GGWCC	4 cut(s)	178, 289, 941, 1234
BaeGI	GKGCMC	1 cut(s)	1525
BalI	TGGCCA	1 cut(s)	905
BanI	GGYRCC	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	30
BbrPI	CACGTG	1 cut(s)	1469
BbsI	GAAGAC	1 cut(s)	1381
Bbv12I	GWGCWC	1 cut(s)	1525
BbvCI	CCTCAGC	2 cut(s)	12, 957
BbvI	GCAGC	6 cut(s)	133, 136, 415, 532, 583, 898
BccI	CCATC	4 cut(s)	421, 895, 914, 1006
BceAI	ACGGC	3 cut(s)	214, 317, 405
BciT130I	CCWGG	4 cut(s)	35, 122, 495, 713
BciVI	GTATCC	3 cut(s)	658, 1140, 1439
BcoDI	GTCTC	2 cut(s)	1004, 1154
BfaI	CTAG	2 cut(s)	153, 1631
BfoI	RGCGCY	4 cut(s)	118, 159, 272, 516
BfuAI	ACCTGC	3 cut(s)	514, 871, 1047
BfuI	GTATCC	3 cut(s)	658, 1140, 1439
BmcAI	AGTACT	2 cut(s)	687, 1151
Bme1390I	CCNGG	4 cut(s)	35, 122, 495, 713
Bme18I	GGWCC	4 cut(s)	178, 289, 941, 1234
BmeT110I	CYCGRG	1 cut(s)	101
BmgT120I	GGNCC	5 cut(s)	178, 289, 941, 1234, 1264
BmiI	GGNNCC	4 cut(s)	39, 116, 180, 1235
BmrFI	CCNGG	4 cut(s)	35, 122, 495, 713
BmrI	ACTGGG	1 cut(s)	871
BmsI	GCATC	4 cut(s)	598, 988, 1195, 1557
BmtI	GCTAGC	2 cut(s)	156, 1634
BmuI	ACTGGG	1 cut(s)	871
BoxI	GACNNNNGTC	2 cut(s)	260, 921
BpiI	GAAGAC	1 cut(s)	1381
BplI	GAGNNNNNCTC	2 cut(s)	44, 76
BpmI	CTGGAG	2 cut(s)	657, 1574
Bpu10I	CCTNAGC	2 cut(s)	12, 957
Bpu14I	TTCGAA	1 cut(s)	1137
BsaAI	YACGTR	2 cut(s)	439, 1469
BsaBI	GATNNNNATC	1 cut(s)	905
BsaHI	GRCGYC	2 cut(s)	115, 243
BsaI	GGTCTC	1 cut(s)	1004
BsaJI	CCNNGG	5 cut(s)	33, 333, 396, 712, 1531
BsaXI	ACNNNNNCTCC	4 cut(s)	873, 903, 1007, 1037
Bsc4I	CCNNNNNNNGG	4 cut(s)	334, 427, 1532, 1535
Bse118I	RCCGGY	1 cut(s)	703
Bse1I	ACTGG	4 cut(s)	257, 849, 877, 1000
Bse8I	GATNNNNATC	1 cut(s)	905
BseBI	CCWGG	4 cut(s)	35, 122, 495, 713
BseDI	CCNNGG	5 cut(s)	33, 333, 396, 712, 1531
BseGI	GGATG	3 cut(s)	1210, 1590, 1601
BseJI	GATNNNNATC	1 cut(s)	905
BseLI	CCNNNNNNNGG	4 cut(s)	334, 427, 1532, 1535
BseMII	CTCAG	6 cut(s)	26, 79, 150, 948, 1149, 1284
BseNI	ACTGG	4 cut(s)	257, 849, 877, 1000
BsePI	GCGCGC	1 cut(s)	315
BseRI	GAGGAG	2 cut(s)	65, 1418
BseSI	GKGCMC	1 cut(s)	1525
BseX3I	CGGCCG	1 cut(s)	310
BseXI	GCAGC	6 cut(s)	133, 136, 415, 532, 583, 898
BsgI	GTGCAG	1 cut(s)	422
Bsh1236I	CGCG	5 cut(s)	309, 315, 317, 456, 1615
Bsh1285I	CGRYCG	1 cut(s)	313
BshFI	GGCC	5 cut(s)	77, 312, 905, 1266, 1333
BshNI	GGYRCC	1 cut(s)	114
BsiEI	CGRYCG	1 cut(s)	313
BsiHKAI	GWGCWC	1 cut(s)	1525
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	5 cut(s)	112, 173, 407, 704, 1627
BslFI	GGGAC	1 cut(s)	1247
BslI	CCNNNNNNNGG	4 cut(s)	334, 427, 1532, 1535
BsmAI	GTCTC	2 cut(s)	1004, 1154
BsmFI	GGGAC	1 cut(s)	1247
BsnI	GGCC	5 cut(s)	77, 312, 905, 1266, 1333
Bso31I	GGTCTC	1 cut(s)	1004
BsoBI	CYCGRG	1 cut(s)	101
Bsp119I	TTCGAA	1 cut(s)	1137
Bsp1286I	GDGCHC	2 cut(s)	30, 1525
Bsp143I	GATC	5 cut(s)	234, 324, 804, 1222, 1618
Bsp19I	CCATGG	1 cut(s)	1531
BspANI	GGCC	5 cut(s)	77, 312, 905, 1266, 1333
BspCNI	CTCAG	6 cut(s)	25, 78, 151, 949, 1150, 1285
BspFNI	CGCG	5 cut(s)	309, 315, 317, 456, 1615
BspLI	GGNNCC	4 cut(s)	39, 116, 180, 1235
BspMI	ACCTGC	3 cut(s)	514, 871, 1047
BspOI	GCTAGC	2 cut(s)	156, 1634
BspPI	GGATC	4 cut(s)	242, 319, 1217, 1613
BspQI	GCTCTTC	1 cut(s)	1577
BspT104I	TTCGAA	1 cut(s)	1137
BspT107I	GGYRCC	1 cut(s)	114
BspTNI	GGTCTC	1 cut(s)	1004
BsrBI	CCGCTC	3 cut(s)	184, 211, 1624
BsrFI	RCCGGY	1 cut(s)	703
BsrI	ACTGG	4 cut(s)	257, 849, 877, 1000
BssAI	RCCGGY	1 cut(s)	703
BssECI	CCNNGG	5 cut(s)	33, 333, 396, 712, 1531
BssHII	GCGCGC	1 cut(s)	315
BssMI	GATC	5 cut(s)	234, 324, 804, 1222, 1618
BssNI	GRCGYC	2 cut(s)	115, 243
BssT1I	CCWWGG	1 cut(s)	1531
Bst2UI	CCWGG	4 cut(s)	35, 122, 495, 713
Bst4CI	ACNGT	4 cut(s)	382, 400, 554, 1373
Bst6I	CTCTTC	1 cut(s)	1577
BstACI	GRCGYC	2 cut(s)	115, 243
BstAPI	GCANNNNNTGC	1 cut(s)	763
BstBAI	YACGTR	2 cut(s)	439, 1469
BstBI	TTCGAA	1 cut(s)	1137
BstC8I	GCNNGC	5 cut(s)	154, 186, 317, 868, 1632
BstDEI	CTNAG	6 cut(s)	12, 65, 159, 957, 1158, 1293
BstDSI	CCRYGG	3 cut(s)	333, 396, 1531
BstF5I	GGATG	3 cut(s)	1210, 1590, 1601
BstFNI	CGCG	5 cut(s)	309, 315, 317, 456, 1615
BstH2I	RGCGCY	4 cut(s)	118, 159, 272, 516
BstHHI	GCGC	7 cut(s)	117, 158, 271, 317, 319, 515, 1423
BstKTI	GATC	5 cut(s)	237, 327, 807, 1225, 1621
BstMAI	GTCTC	2 cut(s)	1004, 1154
BstMBI	GATC	5 cut(s)	234, 324, 804, 1222, 1618
BstMCI	CGRYCG	1 cut(s)	313
BstNI	CCWGG	4 cut(s)	35, 122, 495, 713
BstPAI	GACNNNNGTC	2 cut(s)	260, 921
BstSCI	CCNGG	4 cut(s)	33, 120, 493, 711
BstSLI	GKGCMC	1 cut(s)	1525
BstUI	CGCG	5 cut(s)	309, 315, 317, 456, 1615
BstV1I	GCAGC	6 cut(s)	133, 136, 415, 532, 583, 898
BstV2I	GAAGAC	1 cut(s)	1381
BstX2I	RGATCY	1 cut(s)	1222
BstYI	RGATCY	1 cut(s)	1222
BstZI	CGGCCG	1 cut(s)	310
BsuI	GTATCC	3 cut(s)	658, 1140, 1439
BsuRI	GGCC	5 cut(s)	77, 312, 905, 1266, 1333
BtgI	CCRYGG	3 cut(s)	333, 396, 1531
BtsCI	GGATG	3 cut(s)	1210, 1590, 1601
BtsIMutI	CAGTG	3 cut(s)	392, 993, 1290
BveI	ACCTGC	3 cut(s)	514, 871, 1047
Cac8I	GCNNGC	5 cut(s)	154, 186, 317, 868, 1632
CciNI	GCGGCCGC	1 cut(s)	310
CfoI	GCGC	7 cut(s)	117, 158, 271, 317, 319, 515, 1423
Cfr10I	RCCGGY	1 cut(s)	703
Cfr13I	GGNCC	5 cut(s)	178, 289, 941, 1234, 1264
CseI	GACGC	2 cut(s)	379, 602
Csp6I	GTAC	7 cut(s)	436, 550, 686, 1118, 1150, 1369, 1436
CviAII	CATG	4 cut(s)	346, 1345, 1433, 1532
CviQI	GTAC	7 cut(s)	436, 550, 686, 1118, 1150, 1369, 1436
DdeI	CTNAG	6 cut(s)	12, 65, 159, 957, 1158, 1293
DinI	GGCGCC	1 cut(s)	116
DpnI	GATC	5 cut(s)	236, 326, 806, 1224, 1620
DpnII	GATC	5 cut(s)	234, 324, 804, 1222, 1618
DraI	TTTAAA	1 cut(s)	841
EaeI	YGGCCR	2 cut(s)	310, 903
EagI	CGGCCG	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	1577
EarI	CTCTTC	1 cut(s)	1577
EciI	GGCGGA	2 cut(s)	46, 154
EclXI	CGGCCG	1 cut(s)	310
Eco130I	CCWWGG	1 cut(s)	1531
Eco147I	AGGCCT	1 cut(s)	1333
Eco24I	GRGCYC	1 cut(s)	30
Eco31I	GGTCTC	1 cut(s)	1004
Eco47I	GGWCC	4 cut(s)	178, 289, 941, 1234
Eco47III	AGCGCT	1 cut(s)	157
Eco52I	CGGCCG	1 cut(s)	310
Eco57I	CTGAAG	6 cut(s)	736, 792, 1220, 1266, 1482, 1495
Eco72I	CACGTG	1 cut(s)	1469
Eco88I	CYCGRG	1 cut(s)	101
EcoO109I	RGGNCCY	2 cut(s)	178, 1234
EcoRII	CCWGG	4 cut(s)	33, 120, 493, 711
EcoT14I	CCWWGG	1 cut(s)	1531
EcoT38I	GRGCYC	1 cut(s)	30
EgeI	GGCGCC	1 cut(s)	116
EheI	GGCGCC	1 cut(s)	116
ErhI	CCWWGG	1 cut(s)	1531
FaeI	CATG	4 cut(s)	349, 1348, 1436, 1535
FaqI	GGGAC	1 cut(s)	1247
FatI	CATG	4 cut(s)	345, 1344, 1432, 1531
FauI	CCCGC	2 cut(s)	189, 1620
FokI	GGATG	3 cut(s)	1217, 1577, 1588
FriOI	GRGCYC	1 cut(s)	30
FspBI	CTAG	2 cut(s)	153, 1631
FspI	TGCGCA	1 cut(s)	1422
GlaI	GCGC	7 cut(s)	116, 157, 270, 316, 318, 514, 1422
GsuI	CTGGAG	2 cut(s)	657, 1574
HaeII	RGCGCY	4 cut(s)	118, 159, 272, 516
HaeIII	GGCC	5 cut(s)	77, 312, 905, 1266, 1333
HapII	CCGG	5 cut(s)	112, 173, 407, 704, 1627
HgaI	GACGC	2 cut(s)	379, 602
HhaI	GCGC	7 cut(s)	117, 158, 271, 317, 319, 515, 1423
Hin1I	GRCGYC	2 cut(s)	115, 243
Hin1II	CATG	4 cut(s)	349, 1348, 1436, 1535
Hin6I	GCGC	7 cut(s)	115, 156, 269, 315, 317, 513, 1421
HinP1I	GCGC	7 cut(s)	115, 156, 269, 315, 317, 513, 1421
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	9 cut(s)	53, 161, 458, 726, 733, 962, 1162, 1170, 1505
HpaII	CCGG	5 cut(s)	112, 173, 407, 704, 1627
HphI	GGTGA	5 cut(s)	786, 873, 926, 1301, 1412
Hpy166II	GTNNAC	3 cut(s)	247, 993, 1523
Hpy188III	TCNNGA	5 cut(s)	103, 662, 730, 1001, 1483
Hpy8I	GTNNAC	3 cut(s)	247, 993, 1523
Hpy99I	CGWCG	2 cut(s)	245, 395
HpyCH4III	ACNGT	4 cut(s)	382, 400, 554, 1373
HpyCH4IV	ACGT	5 cut(s)	243, 438, 1426, 1456, 1468
HpyCH4V	TGCA	3 cut(s)	403, 535, 1523
HpyF3I	CTNAG	6 cut(s)	12, 65, 159, 957, 1158, 1293
HpySE526I	ACGT	5 cut(s)	243, 438, 1426, 1456, 1468
Hsp92I	GRCGYC	2 cut(s)	115, 243
Hsp92II	CATG	4 cut(s)	349, 1348, 1436, 1535
HspAI	GCGC	7 cut(s)	115, 156, 269, 315, 317, 513, 1421
KasI	GGCGCC	1 cut(s)	114
Kzo9I	GATC	5 cut(s)	234, 324, 804, 1222, 1618
LguI	GCTCTTC	1 cut(s)	1577
LmnI	GCTCC	9 cut(s)	37, 114, 124, 225, 894, 1026, 1555, 1629, 1639
Lsp1109I	GCAGC	6 cut(s)	133, 136, 415, 532, 583, 898
LweI	GCATC	4 cut(s)	598, 988, 1195, 1557
MaeI	CTAG	2 cut(s)	153, 1631
MaeII	ACGT	5 cut(s)	243, 438, 1426, 1456, 1468
MaeIII	GTNAC	4 cut(s)	879, 914, 1066, 1355
MalI	GATC	5 cut(s)	236, 326, 806, 1224, 1620
MbiI	CCGCTC	3 cut(s)	184, 211, 1624
MboI	GATC	5 cut(s)	234, 324, 804, 1222, 1618
MboII	GAAGA	4 cut(s)	352, 742, 1381, 1564
MfeI	CAATTG	1 cut(s)	644
MflI	RGATCY	1 cut(s)	1222
MhlI	GDGCHC	2 cut(s)	30, 1525
MlsI	TGGCCA	1 cut(s)	905
MluCI	AATT	7 cut(s)	504, 615, 644, 1093, 1268, 1375, 1473
MluNI	TGGCCA	1 cut(s)	905
Mly113I	GGCGCC	1 cut(s)	115
MlyI	GAGTC	7 cut(s)	62, 170, 467, 742, 956, 1156, 1164
MmeI	TCCRAC	1 cut(s)	721
Mox20I	TGGCCA	1 cut(s)	905
MroXI	GAANNNNTTC	2 cut(s)	374, 1188
MscI	TGGCCA	1 cut(s)	905
MseI	TTAA	3 cut(s)	507, 840, 1020
MslI	CAYNNNNRTG	1 cut(s)	984
Msp20I	TGGCCA	1 cut(s)	905
MspI	CCGG	5 cut(s)	112, 173, 407, 704, 1627
MspR9I	CCNGG	4 cut(s)	35, 122, 495, 713
MssI	GTTTAAAC	1 cut(s)	841
MunI	CAATTG	1 cut(s)	644
MvaI	CCWGG	4 cut(s)	35, 122, 495, 713
MvnI	CGCG	5 cut(s)	309, 315, 317, 456, 1615
NarI	GGCGCC	1 cut(s)	115
NcoI	CCATGG	1 cut(s)	1531
NdeII	GATC	5 cut(s)	234, 324, 804, 1222, 1618
NheI	GCTAGC	2 cut(s)	152, 1630
NlaIII	CATG	4 cut(s)	349, 1348, 1436, 1535
NlaIV	GGNNCC	4 cut(s)	39, 116, 180, 1235
NmeAIII	GCCGAG	1 cut(s)	193
NmuCI	GTSAC	3 cut(s)	879, 914, 1355
NotI	GCGGCCGC	1 cut(s)	310
NsbI	TGCGCA	1 cut(s)	1422
NspV	TTCGAA	1 cut(s)	1137
PaeR7I	CTCGAG	1 cut(s)	101
PaqCI	CACCTGC	1 cut(s)	514
PauI	GCGCGC	1 cut(s)	315
PceI	AGGCCT	1 cut(s)	1333
PciSI	GCTCTTC	1 cut(s)	1577
PdmI	GAANNNNTTC	2 cut(s)	374, 1188
PfeI	GAWTC	2 cut(s)	726, 1505
PleI	GAGTC	7 cut(s)	61, 169, 466, 741, 956, 1156, 1164
PluTI	GGCGCC	1 cut(s)	118
PmaCI	CACGTG	1 cut(s)	1469
PmeI	GTTTAAAC	1 cut(s)	841
PmlI	CACGTG	1 cut(s)	1469
PpsI	GAGTC	7 cut(s)	61, 169, 466, 741, 956, 1156, 1164
Ppu21I	YACGTR	2 cut(s)	439, 1469
PpuMI	RGGWCCY	2 cut(s)	178, 1234
PshAI	GACNNNNGTC	2 cut(s)	260, 921
Psp5II	RGGWCCY	2 cut(s)	178, 1234
Psp6I	CCWGG	4 cut(s)	33, 120, 493, 711
PspCI	CACGTG	1 cut(s)	1469
PspGI	CCWGG	4 cut(s)	33, 120, 493, 711
PspN4I	GGNNCC	4 cut(s)	39, 116, 180, 1235
PspPI	GGNCC	5 cut(s)	178, 289, 941, 1234, 1264
PspPPI	RGGWCCY	2 cut(s)	178, 1234
PsuI	RGATCY	1 cut(s)	1222
PteI	GCGCGC	1 cut(s)	315
RsaI	GTAC	7 cut(s)	437, 551, 687, 1119, 1151, 1370, 1437
RsaNI	GTAC	7 cut(s)	436, 550, 686, 1118, 1150, 1369, 1436
RseI	CAYNNNNRTG	1 cut(s)	984
SapI	GCTCTTC	1 cut(s)	1577
SaqAI	TTAA	3 cut(s)	507, 840, 1020
Sau3AI	GATC	5 cut(s)	234, 324, 804, 1222, 1618
Sau96I	GGNCC	5 cut(s)	178, 289, 941, 1234, 1264
ScaI	AGTACT	2 cut(s)	687, 1151
SchI	GAGTC	7 cut(s)	62, 170, 467, 742, 956, 1156, 1164
ScrFI	CCNGG	4 cut(s)	35, 122, 495, 713
SduI	GDGCHC	2 cut(s)	30, 1525
SfaNI	GCATC	4 cut(s)	598, 988, 1195, 1557
SfoI	GGCGCC	1 cut(s)	116
Sfr274I	CTCGAG	1 cut(s)	101
SfuI	TTCGAA	1 cut(s)	1137
SinI	GGWCC	4 cut(s)	178, 289, 941, 1234
SlaI	CTCGAG	1 cut(s)	101
SmiMI	CAYNNNNRTG	1 cut(s)	984
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	7 cut(s)	504, 615, 644, 1093, 1268, 1375, 1473
SseBI	AGGCCT	1 cut(s)	1333
SspDI	GGCGCC	1 cut(s)	114
SspMI	CTAG	2 cut(s)	153, 1631
StuI	AGGCCT	1 cut(s)	1333
StyD4I	CCNGG	4 cut(s)	33, 120, 493, 711
StyI	CCWWGG	1 cut(s)	1531
TaaI	ACNGT	4 cut(s)	382, 400, 554, 1373
TaiI	ACGT	5 cut(s)	246, 441, 1429, 1459, 1471
TaqI	TCGA	6 cut(s)	102, 601, 1002, 1137, 1215, 1396
TasI	AATT	7 cut(s)	504, 615, 644, 1093, 1268, 1375, 1473
TatI	WGTACW	4 cut(s)	549, 685, 1149, 1368
TfiI	GAWTC	2 cut(s)	726, 1505
Tru1I	TTAA	3 cut(s)	507, 840, 1020
Tru9I	TTAA	3 cut(s)	507, 840, 1020
TscAI	CASTG	3 cut(s)	392, 1000, 1297
TseFI	GTSAC	3 cut(s)	879, 914, 1355
TseI	GCWGC	6 cut(s)	146, 149, 403, 520, 596, 886
Tsp45I	GTSAC	3 cut(s)	879, 914, 1355
TspDTI	ATGAA	2 cut(s)	1368, 1381
TspGWI	ACGGA	4 cut(s)	272, 290, 1135, 1308
TspRI	CASTG	3 cut(s)	392, 1000, 1297
VneI	GTGCAC	1 cut(s)	1521
VpaK11BI	GGWCC	4 cut(s)	178, 289, 941, 1234
XcmI	CCANNNNNNNNNTGG	2 cut(s)	737, 1538
XhoI	CTCGAG	1 cut(s)	101
XmnI	GAANNNNTTC	2 cut(s)	374, 1188
XspI	CTAG	2 cut(s)	153, 1631
ZraI	GACGTC	1 cut(s)	244
ZrmI	AGTACT	2 cut(s)	687, 1151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.