Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001714

Physical Location & Seq

Genomic Coordinates Forward (+)

16460334 .. 16461295

Gene Structure 962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0120000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAACTCCCTTTGTGCCATCTTAGCTCTGCTCTCATTTCTTTTGTTCACTACAACTGTAGAATCAAGAATAGGTGCAGGAGGCTACATGAAAAATTCCATTAAAAAGCAACCCACGCCAGGAGACTTACGGAAGCTCGTAAAAGAACAGTTTGAGCGTAACAATGCCGATCTACCTGATGATAAGACTGAGAAAGCCAACTGCAATGAAAATGGGAAACCTAACACTGAATTTGAGATTGTCGAGTTTGAACCGAGACCTGATGTCACAATTTACCATGGTGACATTGTCGAGTTTGAACCAAGACCTGATGTCACAATTTACCATGGTGACTTTGAACCGAGACCTGATGTCACAATTTACCATGGTGACAGTGAAGTAACAGAGTCCAGAACTCTTAAAGACGAGCTAGAGTCTAAGGCCATAGGTAACATGCACCCTAAGGATAAAGGTCCTAGAGATAAGCTGCCATTTGAAGTCAAAGCCAAAAGGCATGCATTTGAAGAAGATTTTGAGCCAAGGCCAAATATTTCTGTGTACAATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006422 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045202 GO:0046483 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0098542 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2 tRNA_anti-codon

Protein Analysis

182

Amino Acids

20.78

Weight (kDa)

5.06

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Organ_specific	PF10950	26 - 109	1.2e-06	Organ specific protein
Organ_specific	PF10950	110 - 181	8.9e-08	Organ specific protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26870 AT4G31180 AT4G31180
fragaria_vesca	FvH4_2g15870 FvH4_2g15910 FvH4_2g30550
malus_domestica	MD08G1134400.v1.1 MD12G1153800.v1.1 MD14G1143300.v1.1 MD15G1113400.v1.1
prunus_persica	Prupe.1G463800_v2.0.a1 Prupe.4G141600_v2.0.a1 Prupe.8G055000_v2.0.a1
pyrus_communis	pycom08g11340 pycom15g10170 pycom16g11710
rosa_chinensis	RchiOBHm_Chr5g0032141 RchiOBHm_Chr5g0032161 RchiOBHm_Chr6g0278871 RchiOBHm_Chr6g0312531
rosa_laevigata	RLG00000010321 RLG00000033368
rosa_multiflora	Rmu_co8427103.1_g000001 Rmu_sc0003031.1_g000023 Rmu_sc0005375.1_g000002 Rmu_sc0005375.1_g000011 Rmu_sc0008363.1_g000011 Rmu_sc0043080.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048240 Rroxscaffold_1G00048270 Rroxscaffold_7G00156770
rosa_rugosa	Rorug06G0119800 Rorug06G0120000 Rorug06G0123400 Rorug06G0396100 Rorug06G0396200
rosa_samantha	Rh5DG228900 Rh6AG228300 Rh6AG513500 Rh6BG233900 Rh6BG234000 Rh6BG524200 Rh6BG526500 Rh6CG236300 Rh6CG531400 Rh6DG515600
rosa_wichuraiana	Rw6G020030 Rw6G044650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	94, 230
AfaI	GTAC	1 cut(s)	539
AfiI	CCNNNNNNNGG	1 cut(s)	119
AgsI	TTSAA	5 cut(s)	251, 299, 338, 476, 503
AhdI	GACNNNNNGTC	3 cut(s)	263, 311, 350
AjnI	CCWGG	1 cut(s)	118
AluBI	AGCT	4 cut(s)	26, 136, 409, 466
AluI	AGCT	4 cut(s)	26, 136, 409, 466
Alw26I	GTCTC	3 cut(s)	117, 250, 337
AoxI	GGCC	2 cut(s)	420, 521
ApeKI	GCWGC	1 cut(s)	466
ApoI	RAATTY	2 cut(s)	94, 230
AspS9I	GGNCC	1 cut(s)	452
AsuHPI	GGTGA	3 cut(s)	293, 341, 380
AvaII	GGWCC	1 cut(s)	452
AxyI	CCTNAGG	1 cut(s)	441
BbvI	GCAGC	1 cut(s)	453
BccI	CCATC	1 cut(s)	26
BciT130I	CCWGG	1 cut(s)	120
BcoDI	GTCTC	3 cut(s)	117, 250, 337
BfaI	CTAG	2 cut(s)	410, 456
BfmI	CTRYAG	1 cut(s)	57
BisI	GCNGC	1 cut(s)	467
BlsI	GCNGC	1 cut(s)	468
Bme1390I	CCNGG	1 cut(s)	120
Bme18I	GGWCC	1 cut(s)	452
BmeRI	GACNNNNNGTC	3 cut(s)	263, 311, 350
BmgT120I	GGNCC	1 cut(s)	452
BmrFI	CCNGG	1 cut(s)	120
BsaI	GGTCTC	2 cut(s)	250, 337
BsaJI	CCNNGG	4 cut(s)	277, 325, 364, 518
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse21I	CCTNAGG	1 cut(s)	441
Bse3DI	GCAATG	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	120
BseDI	CCNNGG	4 cut(s)	277, 325, 364, 518
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	453
BsgI	GTGCAG	1 cut(s)	96
BshFI	GGCC	2 cut(s)	422, 523
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmAI	GTCTC	3 cut(s)	117, 250, 337
BsnI	GGCC	2 cut(s)	422, 523
Bso31I	GGTCTC	2 cut(s)	250, 337
Bsp1407I	TGTACA	1 cut(s)	537
Bsp143I	GATC	1 cut(s)	169
Bsp19I	CCATGG	3 cut(s)	277, 325, 364
BspANI	GGCC	2 cut(s)	422, 523
BspCNI	CTCAG	1 cut(s)	181
BspTNI	GGTCTC	2 cut(s)	250, 337
BsrDI	GCAATG	1 cut(s)	211
BsrGI	TGTACA	1 cut(s)	537
BssECI	CCNNGG	4 cut(s)	277, 325, 364, 518
BssMI	GATC	1 cut(s)	169
BssT1I	CCWWGG	4 cut(s)	277, 325, 364, 518
Bst2UI	CCWGG	1 cut(s)	120
Bst4CI	ACNGT	3 cut(s)	58, 150, 374
BstAUI	TGTACA	1 cut(s)	537
BstC8I	GCNNGC	1 cut(s)	495
BstDEI	CTNAG	4 cut(s)	22, 189, 417, 441
BstDSI	CCRYGG	3 cut(s)	277, 325, 364
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	3 cut(s)	117, 250, 337
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 115
BstNI	CCWGG	1 cut(s)	120
BstNSI	RCATGY	2 cut(s)	436, 497
BstSCI	CCNGG	1 cut(s)	118
BstSFI	CTRYAG	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	453
Bsu36I	CCTNAGG	1 cut(s)	441
BsuRI	GGCC	2 cut(s)	422, 523
BtgI	CCRYGG	3 cut(s)	277, 325, 364
BtsIMutI	CAGTG	2 cut(s)	225, 379
Cac8I	GCNNGC	1 cut(s)	495
Cfr13I	GGNCC	1 cut(s)	452
Csp6I	GTAC	1 cut(s)	538
CviAII	CATG	6 cut(s)	88, 278, 326, 365, 433, 494
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	4 cut(s)	22, 189, 417, 441
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
DriI	GACNNNNNGTC	3 cut(s)	263, 311, 350
Eam1105I	GACNNNNNGTC	3 cut(s)	263, 311, 350
Eco130I	CCWWGG	4 cut(s)	277, 325, 364, 518
Eco31I	GGTCTC	2 cut(s)	250, 337
Eco47I	GGWCC	1 cut(s)	452
Eco81I	CCTNAGG	1 cut(s)	441
EcoO109I	RGGNCCY	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	118
EcoT14I	CCWWGG	4 cut(s)	277, 325, 364, 518
EcoT22I	ATGCAT	1 cut(s)	499
ErhI	CCWWGG	4 cut(s)	277, 325, 364, 518
FaeI	CATG	6 cut(s)	91, 281, 329, 368, 436, 497
FaiI	YATR	7 cut(s)	89, 279, 327, 366, 425, 434, 495
FatI	CATG	6 cut(s)	87, 277, 325, 364, 432, 493
Fnu4HI	GCNGC	1 cut(s)	467
Fsp4HI	GCNGC	1 cut(s)	467
FspBI	CTAG	2 cut(s)	410, 456
GluI	GCNGC	1 cut(s)	467
HaeIII	GGCC	2 cut(s)	422, 523
Hin1II	CATG	6 cut(s)	91, 281, 329, 368, 436, 497
HinfI	GANTC	3 cut(s)	62, 386, 413
HphI	GGTGA	3 cut(s)	293, 341, 380
Hpy166II	GTNNAC	2 cut(s)	48, 538
Hpy188III	TCNNGA	2 cut(s)	66, 390
Hpy8I	GTNNAC	2 cut(s)	48, 538
HpyCH4III	ACNGT	3 cut(s)	58, 150, 374
HpyCH4V	TGCA	4 cut(s)	77, 204, 436, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 115
HpyF3I	CTNAG	4 cut(s)	22, 189, 417, 441
Hsp92II	CATG	6 cut(s)	91, 281, 329, 368, 436, 497
Kzo9I	GATC	1 cut(s)	169
LpnPI	CCDG	8 cut(s)	63, 105, 132, 189, 273, 321, 360, 403
Lsp1109I	GCAGC	1 cut(s)	453
MaeI	CTAG	2 cut(s)	410, 456
MaeIII	GTNAC	9 cut(s)	158, 265, 281, 313, 329, 352, 368, 379, 428
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	2 cut(s)	515, 518
MluCI	AATT	5 cut(s)	94, 230, 270, 318, 357
MlyI	GAGTC	2 cut(s)	395, 422
MnlI	CCTC	1 cut(s)	74
Mph1103I	ATGCAT	1 cut(s)	499
MseI	TTAA	2 cut(s)	102, 399
MspR9I	CCNGG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	23, 115
NcoI	CCATGG	3 cut(s)	277, 325, 364
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	6 cut(s)	91, 281, 329, 368, 436, 497
NmuCI	GTSAC	6 cut(s)	265, 281, 313, 329, 352, 368
NsiI	ATGCAT	1 cut(s)	499
NspI	RCATGY	2 cut(s)	436, 497
PaeI	GCATGC	1 cut(s)	497
PfeI	GAWTC	1 cut(s)	62
PflFI	GACNNNGTC	1 cut(s)	287
PkrI	GCNGC	1 cut(s)	468
PleI	GAGTC	2 cut(s)	394, 421
PpsI	GAGTC	2 cut(s)	394, 421
PpuMI	RGGWCCY	1 cut(s)	452
Psp5II	RGGWCCY	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	452
PspPPI	RGGWCCY	1 cut(s)	452
PsyI	GACNNNGTC	1 cut(s)	287
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
SaqAI	TTAA	2 cut(s)	102, 399
SatI	GCNGC	1 cut(s)	467
Sau3AI	GATC	1 cut(s)	169
Sau96I	GGNCC	1 cut(s)	452
SchI	GAGTC	2 cut(s)	395, 422
ScrFI	CCNGG	1 cut(s)	120
SfcI	CTRYAG	1 cut(s)	57
SinI	GGWCC	1 cut(s)	452
SphI	GCATGC	1 cut(s)	497
Sse9I	AATT	5 cut(s)	94, 230, 270, 318, 357
SspI	AATATT	1 cut(s)	529
SspMI	CTAG	2 cut(s)	410, 456
StyD4I	CCNGG	1 cut(s)	118
StyI	CCWWGG	4 cut(s)	277, 325, 364, 518
TaaI	ACNGT	3 cut(s)	58, 150, 374
TaqI	TCGA	2 cut(s)	243, 291
TasI	AATT	5 cut(s)	94, 230, 270, 318, 357
TatI	WGTACW	1 cut(s)	537
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	2 cut(s)	102, 399
Tru9I	TTAA	2 cut(s)	102, 399
TscAI	CASTG	2 cut(s)	232, 379
TseFI	GTSAC	6 cut(s)	265, 281, 313, 329, 352, 368
TseI	GCWGC	1 cut(s)	466
Tsp45I	GTSAC	6 cut(s)	265, 281, 313, 329, 352, 368
TspDTI	ATGAA	3 cut(s)	17, 104, 222
TspGWI	ACGGA	1 cut(s)	145
TspRI	CASTG	2 cut(s)	232, 379
Tth111I	GACNNNGTC	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	452
XapI	RAATTY	2 cut(s)	94, 230
XceI	RCATGY	2 cut(s)	436, 497
XspI	CTAG	2 cut(s)	410, 456
Zsp2I	ATGCAT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.