Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001714

Physical Location & Seq

Genomic Coordinates Reverse (-)

16450857 .. 16452182

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0119800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGAATTGAGTTCTTTTAAGGGAAGAAACATGGGTTCAAGTCTTGCTTTCTGGTGCCCCTTACTTCATCTTCTTCTACTAGTGCTGGTTATGTGTGCTCAAGGAATTGCAGGCAGGAAGCTGACTGAGGAACAGCTGGAAACAACACACAAATTGATGAAGCCTATGGATCAAAGAATTCAAGCTCATCATTCATCATCCCACATGGATCACATGGACCCTTCACATATGATTTTCTTCACCATCAAGGACTTGAAAGTTGGGAAAACAATGCCAATCTATTTCCCAAAAAGAGACCCTTCAAAATCTCCTCGTTTTTTACCAAGATCTCAAGCTGATTCAATTCCTTTCTCATCAAAAAAACTCCCCCACCTCCTTGAGTTCTTCTCTTTCTCCAAAGATTCTCACCAAGCCAAAGCCATGGAAGACACTATTACGCAATGTGAGATTGAACCCATCAAAGGAGAAACCAAGTTCTGTCCCACTTCCTTAGAATCCATGCTGGATTTCACTCATAGTATGTTGGGACCAAACACCCGTTTCACTGCTGTAGCCACTGCCCATCTCACAAATTCAACTACCCTGTTCCAGAATTATACCATTTTGAAAGAGCCTACAGAAATCTTTGCTCCAAAGATGGTGGCATGTCACAATATGCCTTACCCTTATGCAGTTTTCTATTGCCATAGCCAACAAAGTGTGAACAAGGTGTACAAAGTTGAATTAGGGGGTGAAGATGGAGATAGAGTTGACGCTGTTGCTGTCTGCCACTTGGATACTTCTGATTGGAGCCCTAATCATGCATCATTCAGTGTGCTCAGGATCAAGCCTGGGACTTCTCCTGTGTGCCATTTCTTTCCTGCTGATAATCTTGTATGGGTTCCAACATCAACCTCAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006422 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045202 GO:0046483 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0098542 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2 tRNA_anti-codon

Protein Analysis

300

Amino Acids

33.81

Weight (kDa)

7.26

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BURP	PF03181	78 - 295	1.4e-85	BURP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26870 AT4G31180 AT4G31180
fragaria_vesca	FvH4_2g15870 FvH4_2g15910 FvH4_2g30550
malus_domestica	MD08G1134400.v1.1 MD12G1153800.v1.1 MD14G1143300.v1.1 MD15G1113400.v1.1
prunus_persica	Prupe.1G463800_v2.0.a1 Prupe.4G141600_v2.0.a1 Prupe.8G055000_v2.0.a1
pyrus_communis	pycom08g11340 pycom15g10170 pycom16g11710
rosa_chinensis	RchiOBHm_Chr5g0032141 RchiOBHm_Chr5g0032161 RchiOBHm_Chr6g0278871 RchiOBHm_Chr6g0312531
rosa_laevigata	RLG00000010321 RLG00000033368
rosa_multiflora	Rmu_co8427103.1_g000001 Rmu_sc0003031.1_g000023 Rmu_sc0005375.1_g000002 Rmu_sc0005375.1_g000011 Rmu_sc0008363.1_g000011 Rmu_sc0043080.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048240 Rroxscaffold_1G00048270 Rroxscaffold_7G00156770
rosa_rugosa	Rorug06G0119800 Rorug06G0120000 Rorug06G0123400 Rorug06G0396100 Rorug06G0396200
rosa_samantha	Rh5DG228900 Rh6AG228300 Rh6AG513500 Rh6BG233900 Rh6BG234000 Rh6BG524200 Rh6BG526500 Rh6CG236300 Rh6CG531400 Rh6DG515600
rosa_wichuraiana	Rw6G020030 Rw6G044650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	54
AclWI	GGATC	3 cut(s)	177, 216, 830
AcsI	RAATTY	2 cut(s)	177, 571
AfaI	GTAC	1 cut(s)	713
AfiI	CCNNNNNNNGG	1 cut(s)	461
AgsI	TTSAA	9 cut(s)	39, 182, 256, 303, 342, 452, 576, 607, 722
AhlI	ACTAGT	1 cut(s)	79
AjnI	CCWGG	1 cut(s)	829
AluBI	AGCT	4 cut(s)	121, 136, 185, 335
AluI	AGCT	4 cut(s)	121, 136, 185, 335
Alw21I	GWGCWC	2 cut(s)	100, 819
Alw26I	GTCTC	1 cut(s)	288
AlwI	GGATC	3 cut(s)	177, 216, 830
ApoI	RAATTY	2 cut(s)	177, 571
AspS9I	GGNCC	2 cut(s)	217, 527
AsuHPI	GGTGA	3 cut(s)	232, 398, 743
AvaII	GGWCC	2 cut(s)	217, 527
BaeGI	GKGCMC	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	54
BanII	GRGCYC	1 cut(s)	794
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	2 cut(s)	100, 819
BccI	CCATC	5 cut(s)	251, 464, 570, 631, 731
BciT130I	CCWGG	1 cut(s)	831
BciVI	GTATCC	1 cut(s)	769
BcoDI	GTCTC	1 cut(s)	288
BcuI	ACTAGT	1 cut(s)	79
BfaI	CTAG	1 cut(s)	80
BfmI	CTRYAG	2 cut(s)	549, 615
BfuI	GTATCC	1 cut(s)	769
BglII	AGATCT	1 cut(s)	326
Bme1390I	CCNGG	1 cut(s)	831
Bme18I	GGWCC	2 cut(s)	217, 527
BmgT120I	GGNCC	2 cut(s)	217, 527
BmiI	GGNNCC	5 cut(s)	56, 219, 528, 791, 882
BmrFI	CCNGG	1 cut(s)	831
BmsI	GCATC	1 cut(s)	812
BpiI	GAAGAC	1 cut(s)	432
BplI	GAGNNNNNCTC	2 cut(s)	371, 403
Bpu10I	CCTNAGC	1 cut(s)	818
BpuEI	CTTGAG	3 cut(s)	84, 315, 398
BsaI	GGTCTC	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	420, 830
BsaXI	ACNNNNNCTCC	2 cut(s)	732, 762
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse3DI	GCAATG	1 cut(s)	446
BseBI	CCWGG	1 cut(s)	831
BseDI	CCNNGG	2 cut(s)	420, 830
BseGI	GGATG	1 cut(s)	197
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseMI	GCAATG	1 cut(s)	446
BseMII	CTCAG	2 cut(s)	117, 832
BseRI	GAGGAG	1 cut(s)	300
BseSI	GKGCMC	1 cut(s)	59
BshNI	GGYRCC	1 cut(s)	54
BsiHKAI	GWGCWC	2 cut(s)	100, 819
BslFI	GGGAC	3 cut(s)	465, 540, 847
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmAI	GTCTC	1 cut(s)	288
BsmFI	GGGAC	3 cut(s)	465, 540, 847
Bso31I	GGTCTC	1 cut(s)	288
Bsp1286I	GDGCHC	4 cut(s)	59, 100, 794, 819
Bsp1407I	TGTACA	1 cut(s)	711
Bsp143I	GATC	4 cut(s)	169, 208, 326, 822
Bsp19I	CCATGG	1 cut(s)	420
BspCNI	CTCAG	2 cut(s)	118, 831
BspLI	GGNNCC	5 cut(s)	56, 219, 528, 791, 882
BspPI	GGATC	3 cut(s)	177, 216, 830
BspT107I	GGYRCC	1 cut(s)	54
BspTNI	GGTCTC	1 cut(s)	288
BsrDI	GCAATG	1 cut(s)	446
BsrGI	TGTACA	1 cut(s)	711
BssECI	CCNNGG	2 cut(s)	420, 830
BssMI	GATC	4 cut(s)	169, 208, 326, 822
BssT1I	CCWWGG	1 cut(s)	420
Bst2UI	CCWGG	1 cut(s)	831
BstAUI	TGTACA	1 cut(s)	711
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	4 cut(s)	126, 490, 818, 895
BstDSI	CCRYGG	1 cut(s)	420
BstF5I	GGATG	1 cut(s)	197
BstKTI	GATC	4 cut(s)	172, 211, 329, 825
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	4 cut(s)	169, 208, 326, 822
BstNI	CCWGG	1 cut(s)	831
BstNSI	RCATGY	1 cut(s)	648
BstSCI	CCNGG	1 cut(s)	829
BstSFI	CTRYAG	2 cut(s)	549, 615
BstSLI	GKGCMC	1 cut(s)	59
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	1 cut(s)	326
BstXI	CCANNNNNNTGG	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	326
BsuI	GTATCC	1 cut(s)	769
BtgI	CCRYGG	1 cut(s)	420
BtsCI	GGATG	1 cut(s)	197
BtsI	GCAGTG	2 cut(s)	543, 555
BtsIMutI	CAGTG	4 cut(s)	543, 555, 817, 903
Cac8I	GCNNGC	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	217, 527
CseI	GACGC	1 cut(s)	761
Csp6I	GTAC	1 cut(s)	712
CspCI	CAANNNNNGTGG	2 cut(s)	621, 656
CviAII	CATG	7 cut(s)	31, 205, 214, 421, 499, 645, 800
CviQI	GTAC	1 cut(s)	712
DdeI	CTNAG	4 cut(s)	126, 490, 818, 895
DpnI	GATC	4 cut(s)	171, 210, 328, 824
DpnII	GATC	4 cut(s)	169, 208, 326, 822
Eco130I	CCWWGG	1 cut(s)	420
Eco24I	GRGCYC	1 cut(s)	794
Eco31I	GGTCTC	1 cut(s)	288
Eco47I	GGWCC	2 cut(s)	217, 527
EcoRI	GAATTC	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	829
EcoT14I	CCWWGG	1 cut(s)	420
EcoT22I	ATGCAT	1 cut(s)	805
EcoT38I	GRGCYC	1 cut(s)	794
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	7 cut(s)	34, 208, 217, 424, 502, 648, 803
FalI	AAGNNNNNCTT	4 cut(s)	31, 63, 283, 315
FaqI	GGGAC	3 cut(s)	465, 540, 847
FatI	CATG	7 cut(s)	30, 204, 213, 420, 498, 644, 799
FauNDI	CATATG	1 cut(s)	228
FokI	GGATG	1 cut(s)	184
FriOI	GRGCYC	1 cut(s)	794
FspBI	CTAG	1 cut(s)	80
HgaI	GACGC	1 cut(s)	761
Hin1II	CATG	7 cut(s)	34, 208, 217, 424, 502, 648, 803
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HinfI	GANTC	3 cut(s)	338, 401, 494
HphI	GGTGA	3 cut(s)	232, 398, 743
Hpy166II	GTNNAC	3 cut(s)	703, 712, 751
Hpy188I	TCNGA	1 cut(s)	784
Hpy188III	TCNNGA	2 cut(s)	589, 820
Hpy8I	GTNNAC	3 cut(s)	703, 712, 751
HpyAV	CCTTC	2 cut(s)	231, 309
HpyCH4V	TGCA	3 cut(s)	110, 671, 803
HpyF3I	CTNAG	4 cut(s)	126, 490, 818, 895
Hsp92II	CATG	7 cut(s)	34, 208, 217, 424, 502, 648, 803
Kzo9I	GATC	4 cut(s)	169, 208, 326, 822
LmnI	GCTCC	2 cut(s)	634, 789
LweI	GCATC	1 cut(s)	812
MaeI	CTAG	1 cut(s)	80
MaeIII	GTNAC	1 cut(s)	647
MalI	GATC	4 cut(s)	171, 210, 328, 824
MboI	GATC	4 cut(s)	169, 208, 326, 822
MboII	GAAGA	7 cut(s)	36, 62, 65, 229, 376, 437, 746
MflI	RGATCY	1 cut(s)	326
MhlI	GDGCHC	4 cut(s)	59, 100, 794, 819
MluCI	AATT	8 cut(s)	5, 105, 152, 177, 342, 571, 592, 722
MnlI	CCTC	3 cut(s)	121, 321, 383
Mph1103I	ATGCAT	1 cut(s)	805
MseI	TTAA	1 cut(s)	18
MspA1I	CMGCKG	1 cut(s)	136
MspR9I	CCNGG	1 cut(s)	831
MvaI	CCWGG	1 cut(s)	831
NcoI	CCATGG	1 cut(s)	420
NdeI	CATATG	1 cut(s)	228
NdeII	GATC	4 cut(s)	169, 208, 326, 822
NlaIII	CATG	7 cut(s)	34, 208, 217, 424, 502, 648, 803
NlaIV	GGNNCC	5 cut(s)	56, 219, 528, 791, 882
NmuCI	GTSAC	1 cut(s)	647
NsiI	ATGCAT	1 cut(s)	805
NspI	RCATGY	1 cut(s)	648
PfeI	GAWTC	3 cut(s)	338, 401, 494
Psp6I	CCWGG	1 cut(s)	829
PspGI	CCWGG	1 cut(s)	829
PspN4I	GGNNCC	5 cut(s)	56, 219, 528, 791, 882
PspPI	GGNCC	2 cut(s)	217, 527
PsrI	GAACNNNNNNTAC	2 cut(s)	695, 727
PsuI	RGATCY	1 cut(s)	326
PvuII	CAGCTG	1 cut(s)	136
RsaI	GTAC	1 cut(s)	713
RsaNI	GTAC	1 cut(s)	712
SaqAI	TTAA	1 cut(s)	18
Sau3AI	GATC	4 cut(s)	169, 208, 326, 822
Sau96I	GGNCC	2 cut(s)	217, 527
ScrFI	CCNGG	1 cut(s)	831
SduI	GDGCHC	4 cut(s)	59, 100, 794, 819
SetI	ASST	7 cut(s)	123, 138, 187, 337, 375, 711, 896
SfaNI	GCATC	1 cut(s)	812
SfcI	CTRYAG	2 cut(s)	549, 615
SinI	GGWCC	2 cut(s)	217, 527
SmlI	CTYRAG	3 cut(s)	99, 330, 377
SmoI	CTYRAG	3 cut(s)	99, 330, 377
SpeI	ACTAGT	1 cut(s)	79
Sse9I	AATT	8 cut(s)	5, 105, 152, 177, 342, 571, 592, 722
SspMI	CTAG	1 cut(s)	80
StyD4I	CCNGG	1 cut(s)	829
StyI	CCWWGG	1 cut(s)	420
TasI	AATT	8 cut(s)	5, 105, 152, 177, 342, 571, 592, 722
TatI	WGTACW	1 cut(s)	711
TfiI	GAWTC	3 cut(s)	338, 401, 494
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	4 cut(s)	550, 562, 817, 903
TseFI	GTSAC	1 cut(s)	647
Tsp45I	GTSAC	1 cut(s)	647
TspDTI	ATGAA	3 cut(s)	56, 173, 183
TspRI	CASTG	4 cut(s)	550, 562, 817, 903
VpaK11BI	GGWCC	2 cut(s)	217, 527
XapI	RAATTY	2 cut(s)	177, 571
XceI	RCATGY	1 cut(s)	648
XspI	CTAG	1 cut(s)	80
Zsp2I	ATGCAT	1 cut(s)	805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.