Rh6AG513500

aspartate--tRNA ligase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
68387435 .. 68390784
3350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG513500.1

Sequence Viewer

Length: 1167 bp
ATGTCAGAACCTCAGCCACCCTCCGAGCCCACCCAGGAGCCAGAGAACGAGGAGTCCGCCTCACTCAGCAAAAAGGCCGCCAAGAAAGAAGCCGCCAAGCTCGAGAAGCTCCGTCGCCGCCAGGAGCAAGAAGCTGCGGCCGCCGCGGCTCGCGCTGAGTCCGCCGAGCCGGAGGACCCACTCGCCGCGAACTACGGCGACTTGCCGCTCATTCAGCTCCAATCGATGAGGATCGCCGACGTCAACGACTGGACGGAGGTCGGAGCGCTGACGGAGGCGTTGAAGGACCAGAAGGTTCTGATACGCGGCCGCGCGCAGACGATCCGAGCCGTCGGGAAGAACATGGCGTTTATTGTCGTCAGAGAGAAGGGCTTCACGGTTCAGTGCGTCGCCACGGTGCAGCCGGAGATTGTCAGCCGTCAGATGGTCAAGTACGTGGCGGCGTTAAACCGCGAGTCCATTATTGACATTGAAGGGATTGTGTCTGTTCCTGGCGTGGCAATTAAAGGCGCTTCACAGCAGGTGGAGGTGCAAGTCAGAAAGTTGTACTGTATAAGTAAGGCGGCTGTTTTGCCTATCAACATTGAGGATGCTGCTCGAAGTGATGCCGAAATTGAAAAAGCTAATCAGGCTGGAGAACAACTGGTTCGTGTAAATCAGGATACTCGCTTGAACTTCCGAGTACTTGACTTGCGAACACCGGCTAACCAGGGGATTTTCCGAATCCAGAGTCAAGTTGGAACTATCTTCAGGCAGTTCTTGCTGTCTGAAGGCTTTTTTGAAATCCACTCACCAAAACTGATCGCTGGTTCAAGTGAAGGTGGGGCTTCCGTGTTTAAACTGGACTACAAGGGGCAACCTGCCTGCCTTGCCCAGTCACCGCAGCTCCACAAGCAGATGGCCATCTGTGGTGACTTTGGTCGTATTTTTGAGATTGGTCCTGTTTTCAGAGCTGAGGACTCCTATACACATAGGCATCTATGTGAGTTCACTGGTCTCGATATTGAGATGGAGATTAAGTGGAGCTATTTTGAGGTTATGGATATTGTTAGCAGGTTGTTTGTTACTATGTTTGACTATTTGAACAAAAATTGTGAGAAGGAACTTGAAGCTGTACGGAGGCAGTATCCCTTCGAACCACTAAAGGTTATGATTCTTTTTTTTTAA

Protein Analysis

388

Amino Acids

43.46

Weight (kDa)

5.69

Isoelectric Point (pI)

52.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_2 PF00152 219 - 373 1.3e-38 tRNA synthetases class II (D, K and N)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 511
AatII GACGTC 1 cut(s) 243
Acc36I ACCTGC 3 cut(s) 511, 868, 1044
AccBSI CCGCTC 1 cut(s) 208
AccII CGCG 7 cut(s) 146, 153, 188, 306, 312, 314, 453
AclWI GGATC 2 cut(s) 239, 316
AcoI YGGCCR 3 cut(s) 138, 307, 900
AcuI CTGAAG 2 cut(s) 733, 789
AcyI GRCGYC 1 cut(s) 240
AfaI GTAC 4 cut(s) 434, 548, 684, 1116
AfeI AGCGCT 1 cut(s) 267
AfiI CCNNNNNNNGG 1 cut(s) 424
AgsI TTSAA 8 cut(s) 283, 473, 617, 673, 782, 813, 1084, 1109
AjnI CCWGG 4 cut(s) 33, 120, 490, 708
AloI GAACNNNNNNTCC 2 cut(s) 38, 70
AluBI AGCT 9 cut(s) 100, 109, 134, 217, 623, 886, 953, 1026, 1112
AluI AGCT 9 cut(s) 100, 109, 134, 217, 623, 886, 953, 1026, 1112
Alw26I GTCTC 1 cut(s) 1001
AlwI GGATC 2 cut(s) 239, 316
Ama87I CYCGRG 1 cut(s) 101
Aor51HI AGCGCT 1 cut(s) 267
AoxI GGCC 4 cut(s) 75, 138, 307, 900
ApeKI GCWGC 4 cut(s) 134, 400, 593, 883
ArsI GACNNNNNNTTYG 2 cut(s) 715, 747
Asp700I GAANNNNTTC 1 cut(s) 371
AspLEI GCGC 5 cut(s) 155, 268, 314, 316, 512
AspS9I GGNCC 3 cut(s) 175, 286, 938
AsuHPI GGTGA 3 cut(s) 783, 870, 923
AsuII TTCGAA 1 cut(s) 1134
AvaI CYCGRG 1 cut(s) 101
AvaII GGWCC 3 cut(s) 175, 286, 938
BalI TGGCCA 1 cut(s) 902
BanII GRGCYC 1 cut(s) 30
BbvCI CCTCAGC 2 cut(s) 12, 954
BbvI GCAGC 4 cut(s) 121, 412, 580, 895
BccI CCATC 4 cut(s) 418, 892, 911, 1003
BceAI ACGGC 3 cut(s) 211, 314, 402
BciT130I CCWGG 4 cut(s) 35, 122, 492, 710
BciVI GTATCC 2 cut(s) 655, 1137
BcoDI GTCTC 1 cut(s) 1001
BfoI RGCGCY 2 cut(s) 269, 513
BfuAI ACCTGC 3 cut(s) 511, 868, 1044
BfuI GTATCC 2 cut(s) 655, 1137
BglI GCCNNNNNGGC 1 cut(s) 146
BmcAI AGTACT 1 cut(s) 684
Bme1390I CCNGG 4 cut(s) 35, 122, 492, 710
Bme18I GGWCC 3 cut(s) 175, 286, 938
BmeT110I CYCGRG 1 cut(s) 101
BmgT120I GGNCC 3 cut(s) 175, 286, 938
BmiI GGNNCC 2 cut(s) 39, 177
BmrFI CCNGG 4 cut(s) 35, 122, 492, 710
BmrI ACTGGG 1 cut(s) 868
BmsI GCATC 3 cut(s) 580, 595, 985
BmuI ACTGGG 1 cut(s) 868
BoxI GACNNNNGTC 2 cut(s) 257, 918
BplI GAGNNNNNCTC 2 cut(s) 44, 76
BpmI CTGGAG 1 cut(s) 654
Bpu10I CCTNAGC 2 cut(s) 12, 954
Bpu14I TTCGAA 1 cut(s) 1134
Bsa29I ATCGAT 1 cut(s) 224
BsaAI YACGTR 1 cut(s) 436
BsaBI GATNNNNATC 2 cut(s) 230, 902
BsaHI GRCGYC 1 cut(s) 240
BsaI GGTCTC 1 cut(s) 1001
BsaJI CCNNGG 4 cut(s) 33, 144, 393, 709
BsaXI ACNNNNNCTCC 4 cut(s) 870, 900, 1004, 1034
Bsc4I CCNNNNNNNGG 1 cut(s) 424
Bse118I RCCGGY 1 cut(s) 700
Bse1I ACTGG 5 cut(s) 254, 648, 846, 874, 997
Bse8I GATNNNNATC 2 cut(s) 230, 902
BseBI CCWGG 4 cut(s) 35, 122, 492, 710
BseCI ATCGAT 1 cut(s) 224
BseDI CCNNGG 4 cut(s) 33, 144, 393, 709
BseGI GGATG 1 cut(s) 595
BseJI GATNNNNATC 2 cut(s) 230, 902
BseLI CCNNNNNNNGG 1 cut(s) 424
BseMII CTCAG 4 cut(s) 26, 79, 147, 945
BseNI ACTGG 5 cut(s) 254, 648, 846, 874, 997
BsePI GCGCGC 1 cut(s) 312
BseRI GAGGAG 1 cut(s) 65
BseX3I CGGCCG 2 cut(s) 138, 307
BseXI GCAGC 4 cut(s) 121, 412, 580, 895
BsgI GTGCAG 1 cut(s) 419
Bsh1236I CGCG 7 cut(s) 146, 153, 188, 306, 312, 314, 453
Bsh1285I CGRYCG 2 cut(s) 141, 310
BshFI GGCC 4 cut(s) 77, 140, 309, 902
BshVI ATCGAT 1 cut(s) 224
BsiEI CGRYCG 2 cut(s) 141, 310
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 3 cut(s) 170, 404, 701
BslI CCNNNNNNNGG 1 cut(s) 424
BsmAI GTCTC 1 cut(s) 1001
BsnI GGCC 4 cut(s) 77, 140, 309, 902
Bso31I GGTCTC 1 cut(s) 1001
BsoBI CYCGRG 1 cut(s) 101
Bsp119I TTCGAA 1 cut(s) 1134
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 3 cut(s) 231, 321, 801
BspANI GGCC 4 cut(s) 77, 140, 309, 902
BspCNI CTCAG 4 cut(s) 25, 78, 148, 946
BspDI ATCGAT 1 cut(s) 224
BspFNI CGCG 7 cut(s) 146, 153, 188, 306, 312, 314, 453
BspLI GGNNCC 2 cut(s) 39, 177
BspMI ACCTGC 3 cut(s) 511, 868, 1044
BspPI GGATC 2 cut(s) 239, 316
BspT104I TTCGAA 1 cut(s) 1134
BspTNI GGTCTC 1 cut(s) 1001
BsrBI CCGCTC 1 cut(s) 208
BsrFI RCCGGY 1 cut(s) 700
BsrI ACTGG 5 cut(s) 254, 648, 846, 874, 997
BssAI RCCGGY 1 cut(s) 700
BssECI CCNNGG 4 cut(s) 33, 144, 393, 709
BssHII GCGCGC 1 cut(s) 312
BssMI GATC 3 cut(s) 231, 321, 801
BssNI GRCGYC 1 cut(s) 240
Bst2UI CCWGG 4 cut(s) 35, 122, 492, 710
Bst4CI ACNGT 3 cut(s) 379, 397, 551
BstACI GRCGYC 1 cut(s) 240
BstAPI GCANNNNNTGC 1 cut(s) 760
BstBAI YACGTR 1 cut(s) 436
BstBI TTCGAA 1 cut(s) 1134
BstC8I GCNNGC 3 cut(s) 151, 314, 865
BstDEI CTNAG 4 cut(s) 12, 65, 156, 954
BstDSI CCRYGG 2 cut(s) 144, 393
BstF5I GGATG 1 cut(s) 595
BstFNI CGCG 7 cut(s) 146, 153, 188, 306, 312, 314, 453
BstH2I RGCGCY 2 cut(s) 269, 513
BstHHI GCGC 5 cut(s) 155, 268, 314, 316, 512
BstKTI GATC 3 cut(s) 234, 324, 804
BstMAI GTCTC 1 cut(s) 1001
BstMBI GATC 3 cut(s) 231, 321, 801
BstMCI CGRYCG 2 cut(s) 141, 310
BstNI CCWGG 4 cut(s) 35, 122, 492, 710
BstPAI GACNNNNGTC 2 cut(s) 257, 918
BstSCI CCNGG 4 cut(s) 33, 120, 490, 708
BstUI CGCG 7 cut(s) 146, 153, 188, 306, 312, 314, 453
BstV1I GCAGC 4 cut(s) 121, 412, 580, 895
BstZI CGGCCG 2 cut(s) 138, 307
Bsu15I ATCGAT 1 cut(s) 224
BsuI GTATCC 2 cut(s) 655, 1137
BsuRI GGCC 4 cut(s) 77, 140, 309, 902
BsuTUI ATCGAT 1 cut(s) 224
BtgI CCRYGG 2 cut(s) 144, 393
BtsCI GGATG 1 cut(s) 595
BtsIMutI CAGTG 2 cut(s) 389, 990
BveI ACCTGC 3 cut(s) 511, 868, 1044
Cac8I GCNNGC 3 cut(s) 151, 314, 865
CciNI GCGGCCGC 2 cut(s) 138, 307
CfoI GCGC 5 cut(s) 155, 268, 314, 316, 512
Cfr10I RCCGGY 1 cut(s) 700
Cfr13I GGNCC 3 cut(s) 175, 286, 938
Cfr42I CCGCGG 1 cut(s) 147
ClaI ATCGAT 1 cut(s) 224
CseI GACGC 1 cut(s) 376
Csp6I GTAC 4 cut(s) 433, 547, 683, 1115
CviAII CATG 1 cut(s) 343
CviQI GTAC 4 cut(s) 433, 547, 683, 1115
DdeI CTNAG 4 cut(s) 12, 65, 156, 954
DpnI GATC 3 cut(s) 233, 323, 803
DpnII GATC 3 cut(s) 231, 321, 801
DraI TTTAAA 1 cut(s) 838
EaeI YGGCCR 3 cut(s) 138, 307, 900
EagI CGGCCG 2 cut(s) 138, 307
EciI GGCGGA 2 cut(s) 46, 151
EclXI CGGCCG 2 cut(s) 138, 307
Eco24I GRGCYC 1 cut(s) 30
Eco31I GGTCTC 1 cut(s) 1001
Eco47I GGWCC 3 cut(s) 175, 286, 938
Eco47III AGCGCT 1 cut(s) 267
Eco52I CGGCCG 2 cut(s) 138, 307
Eco57I CTGAAG 2 cut(s) 733, 789
Eco88I CYCGRG 1 cut(s) 101
EcoO109I RGGNCCY 1 cut(s) 175
EcoRII CCWGG 4 cut(s) 33, 120, 490, 708
EcoT38I GRGCYC 1 cut(s) 30
FaeI CATG 1 cut(s) 346
FaiI YATR 8 cut(s) 344, 554, 966, 972, 982, 1040, 1070, 1151
FatI CATG 1 cut(s) 342
FokI GGATG 1 cut(s) 602
FriOI GRGCYC 1 cut(s) 30
GlaI GCGC 5 cut(s) 154, 267, 313, 315, 511
GsuI CTGGAG 1 cut(s) 654
HaeII RGCGCY 2 cut(s) 269, 513
HaeIII GGCC 4 cut(s) 77, 140, 309, 902
HapII CCGG 3 cut(s) 170, 404, 701
HgaI GACGC 1 cut(s) 376
HhaI GCGC 5 cut(s) 155, 268, 314, 316, 512
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 1 cut(s) 346
Hin6I GCGC 5 cut(s) 153, 266, 312, 314, 510
HinP1I GCGC 5 cut(s) 153, 266, 312, 314, 510
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 7 cut(s) 53, 158, 455, 723, 730, 959, 1153
HpaII CCGG 3 cut(s) 170, 404, 701
HphI GGTGA 3 cut(s) 783, 870, 923
Hpy166II GTNNAC 2 cut(s) 244, 990
Hpy188III TCNNGA 5 cut(s) 103, 334, 659, 727, 998
Hpy8I GTNNAC 2 cut(s) 244, 990
Hpy99I CGWCG 4 cut(s) 117, 242, 335, 392
HpyAV CCTTC 8 cut(s) 277, 286, 361, 467, 764, 812, 1093, 1141
HpyCH4III ACNGT 3 cut(s) 379, 397, 551
HpyCH4IV ACGT 2 cut(s) 240, 435
HpyCH4V TGCA 2 cut(s) 400, 532
HpyF3I CTNAG 4 cut(s) 12, 65, 156, 954
HpySE526I ACGT 2 cut(s) 240, 435
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 1 cut(s) 346
HspAI GCGC 5 cut(s) 153, 266, 312, 314, 510
KspI CCGCGG 1 cut(s) 147
Kzo9I GATC 3 cut(s) 231, 321, 801
LmnI GCTCC 7 cut(s) 37, 114, 124, 222, 263, 891, 1023
Lsp1109I GCAGC 4 cut(s) 121, 412, 580, 895
LweI GCATC 3 cut(s) 580, 595, 985
MaeII ACGT 2 cut(s) 240, 435
MaeIII GTNAC 3 cut(s) 876, 911, 1063
MalI GATC 3 cut(s) 233, 323, 803
MbiI CCGCTC 1 cut(s) 208
MboI GATC 3 cut(s) 231, 321, 801
MboII GAAGA 2 cut(s) 349, 739
MhlI GDGCHC 1 cut(s) 30
MlsI TGGCCA 1 cut(s) 902
MluCI AATT 3 cut(s) 501, 612, 1090
MluNI TGGCCA 1 cut(s) 902
MlyI GAGTC 5 cut(s) 62, 167, 464, 739, 953
MmeI TCCRAC 2 cut(s) 241, 718
Mox20I TGGCCA 1 cut(s) 902
MroXI GAANNNNTTC 1 cut(s) 371
MscI TGGCCA 1 cut(s) 902
MseI TTAA 5 cut(s) 446, 504, 837, 1017, 1165
MslI CAYNNNNRTG 1 cut(s) 981
Msp20I TGGCCA 1 cut(s) 902
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 3 cut(s) 170, 404, 701
MspR9I CCNGG 4 cut(s) 35, 122, 492, 710
MssI GTTTAAAC 1 cut(s) 838
MvaI CCWGG 4 cut(s) 35, 122, 492, 710
MvnI CGCG 7 cut(s) 146, 153, 188, 306, 312, 314, 453
NdeII GATC 3 cut(s) 231, 321, 801
NlaIII CATG 1 cut(s) 346
NlaIV GGNNCC 2 cut(s) 39, 177
NmeAIII GCCGAG 1 cut(s) 190
NmuCI GTSAC 2 cut(s) 876, 911
NotI GCGGCCGC 2 cut(s) 138, 307
NspV TTCGAA 1 cut(s) 1134
PaeR7I CTCGAG 1 cut(s) 101
PaqCI CACCTGC 1 cut(s) 511
PauI GCGCGC 1 cut(s) 312
PdmI GAANNNNTTC 1 cut(s) 371
PfeI GAWTC 2 cut(s) 723, 1153
PleI GAGTC 5 cut(s) 61, 166, 463, 738, 953
PmeI GTTTAAAC 1 cut(s) 838
PpsI GAGTC 5 cut(s) 61, 166, 463, 738, 953
Ppu21I YACGTR 1 cut(s) 436
PpuMI RGGWCCY 1 cut(s) 175
PshAI GACNNNNGTC 2 cut(s) 257, 918
Psp5II RGGWCCY 1 cut(s) 175
Psp6I CCWGG 4 cut(s) 33, 120, 490, 708
PspGI CCWGG 4 cut(s) 33, 120, 490, 708
PspN4I GGNNCC 2 cut(s) 39, 177
PspPI GGNCC 3 cut(s) 175, 286, 938
PspPPI RGGWCCY 1 cut(s) 175
PteI GCGCGC 1 cut(s) 312
RsaI GTAC 4 cut(s) 434, 548, 684, 1116
RsaNI GTAC 4 cut(s) 433, 547, 683, 1115
RseI CAYNNNNRTG 1 cut(s) 981
SacII CCGCGG 1 cut(s) 147
SaqAI TTAA 5 cut(s) 446, 504, 837, 1017, 1165
Sau3AI GATC 3 cut(s) 231, 321, 801
Sau96I GGNCC 3 cut(s) 175, 286, 938
ScaI AGTACT 1 cut(s) 684
SchI GAGTC 5 cut(s) 62, 167, 464, 739, 953
ScrFI CCNGG 4 cut(s) 35, 122, 492, 710
SduI GDGCHC 1 cut(s) 30
SfaNI GCATC 3 cut(s) 580, 595, 985
Sfr274I CTCGAG 1 cut(s) 101
Sfr303I CCGCGG 1 cut(s) 147
SfuI TTCGAA 1 cut(s) 1134
SgrBI CCGCGG 1 cut(s) 147
SinI GGWCC 3 cut(s) 175, 286, 938
SlaI CTCGAG 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 981
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 3 cut(s) 501, 612, 1090
StyD4I CCNGG 4 cut(s) 33, 120, 490, 708
TaaI ACNGT 3 cut(s) 379, 397, 551
TaiI ACGT 2 cut(s) 243, 438
TaqI TCGA 5 cut(s) 102, 224, 598, 999, 1134
TasI AATT 3 cut(s) 501, 612, 1090
TatI WGTACW 2 cut(s) 546, 682
TfiI GAWTC 2 cut(s) 723, 1153
Tru1I TTAA 5 cut(s) 446, 504, 837, 1017, 1165
Tru9I TTAA 5 cut(s) 446, 504, 837, 1017, 1165
TscAI CASTG 2 cut(s) 389, 997
TseFI GTSAC 2 cut(s) 876, 911
TseI GCWGC 4 cut(s) 134, 400, 593, 883
Tsp45I GTSAC 2 cut(s) 876, 911
TspGWI ACGGA 5 cut(s) 101, 269, 287, 820, 1132
TspRI CASTG 2 cut(s) 389, 997
VpaK11BI GGWCC 3 cut(s) 175, 286, 938
XcmI CCANNNNNNNNNTGG 1 cut(s) 734
XhoI CTCGAG 1 cut(s) 101
XmnI GAANNNNTTC 1 cut(s) 371
ZraI GACGTC 1 cut(s) 241
ZrmI AGTACT 1 cut(s) 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.