DDB1- and CUL4-associated factor homolog
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 74 |
| AatII | GACGTC | 1 cut(s) | 659 |
| Acc36I | ACCTGC | 2 cut(s) | 74, 796 |
| AccB1I | GGYRCC | 1 cut(s) | 67 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 953 |
| AccII | CGCG | 1 cut(s) | 41 |
| AccIII | TCCGGA | 1 cut(s) | 659 |
| AciI | CCGC | 4 cut(s) | 39, 53, 56, 1128 |
| AclI | AACGTT | 1 cut(s) | 925 |
| AclWI | GGATC | 2 cut(s) | 827, 1171 |
| AcoI | YGGCCR | 1 cut(s) | 147 |
| AcsI | RAATTY | 1 cut(s) | 1028 |
| AcuI | CTGAAG | 1 cut(s) | 605 |
| AcyI | GRCGYC | 2 cut(s) | 68, 656 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 70, 703, 953, 1085, 1090 |
| AgsI | TTSAA | 5 cut(s) | 236, 350, 464, 578, 878 |
| AjnI | CCWGG | 3 cut(s) | 21, 399, 885 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 533, 565 |
| AluBI | AGCT | 6 cut(s) | 13, 50, 163, 407, 429, 1147 |
| AluI | AGCT | 6 cut(s) | 13, 50, 163, 407, 429, 1147 |
| Alw26I | GTCTC | 4 cut(s) | 500, 523, 571, 743 |
| AlwI | GGATC | 2 cut(s) | 827, 1171 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 410, 811 |
| Aor13HI | TCCGGA | 1 cut(s) | 659 |
| AoxI | GGCC | 3 cut(s) | 25, 31, 147 |
| ApeKI | GCWGC | 4 cut(s) | 404, 407, 410, 1144 |
| ApoI | RAATTY | 1 cut(s) | 1028 |
| AseI | ATTAAT | 1 cut(s) | 353 |
| AspLEI | GCGC | 3 cut(s) | 43, 70, 1074 |
| AspS9I | GGNCC | 1 cut(s) | 25 |
| AsuC2I | CCSGG | 2 cut(s) | 65, 1161 |
| AsuHPI | GGTGA | 4 cut(s) | 98, 508, 1046, 1149 |
| BaeGI | GKGCMC | 1 cut(s) | 1096 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 880, 913 |
| BalI | TGGCCA | 1 cut(s) | 149 |
| BanI | GGYRCC | 1 cut(s) | 67 |
| BauI | CACGAG | 1 cut(s) | 1002 |
| BbsI | GAAGAC | 5 cut(s) | 108, 117, 138, 474, 593 |
| BbvI | GCAGC | 4 cut(s) | 394, 397, 416, 1156 |
| BccI | CCATC | 6 cut(s) | 493, 932, 947, 983, 1010, 1083 |
| BceAI | ACGGC | 1 cut(s) | 326 |
| BciT130I | CCWGG | 3 cut(s) | 23, 401, 887 |
| BcnI | CCSGG | 2 cut(s) | 65, 1161 |
| BcoDI | GTCTC | 4 cut(s) | 500, 523, 571, 743 |
| BfaI | CTAG | 3 cut(s) | 314, 735, 1101 |
| BfmI | CTRYAG | 2 cut(s) | 14, 901 |
| BfoI | RGCGCY | 1 cut(s) | 71 |
| BfuAI | ACCTGC | 2 cut(s) | 74, 796 |
| BisI | GCNGC | 6 cut(s) | 39, 56, 405, 408, 411, 1145 |
| BlsI | GCNGC | 6 cut(s) | 40, 57, 406, 409, 412, 1146 |
| Bme1390I | CCNGG | 5 cut(s) | 23, 65, 401, 887, 1161 |
| BmgT120I | GGNCC | 1 cut(s) | 25 |
| BmiI | GGNNCC | 4 cut(s) | 69, 93, 120, 884 |
| BmrFI | CCNGG | 5 cut(s) | 23, 65, 401, 887, 1161 |
| BmrI | ACTGGG | 2 cut(s) | 502, 633 |
| BmsI | GCATC | 1 cut(s) | 845 |
| BmuI | ACTGGG | 2 cut(s) | 502, 633 |
| BpiI | GAAGAC | 5 cut(s) | 108, 117, 138, 474, 593 |
| BpuEI | CTTGAG | 1 cut(s) | 1051 |
| BpuMI | CCSGG | 2 cut(s) | 65, 1161 |
| BsaAI | YACGTR | 1 cut(s) | 1013 |
| BsaHI | GRCGYC | 2 cut(s) | 68, 656 |
| BsaI | GGTCTC | 1 cut(s) | 571 |
| BsaJI | CCNNGG | 7 cut(s) | 21, 22, 28, 63, 150, 836, 1084 |
| BsaWI | WCCGGW | 2 cut(s) | 599, 659 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 70, 703, 953, 1085, 1090 |
| Bse1I | ACTGG | 4 cut(s) | 497, 513, 542, 628 |
| Bse3DI | GCAATG | 1 cut(s) | 289 |
| BseAI | TCCGGA | 1 cut(s) | 659 |
| BseBI | CCWGG | 3 cut(s) | 23, 401, 887 |
| BseDI | CCNNGG | 7 cut(s) | 21, 22, 28, 63, 150, 836, 1084 |
| BseGI | GGATG | 4 cut(s) | 508, 868, 967, 1094 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 70, 703, 953, 1085, 1090 |
| BseMI | GCAATG | 1 cut(s) | 289 |
| BseMII | CTCAG | 3 cut(s) | 170, 416, 582 |
| BseNI | ACTGG | 4 cut(s) | 497, 513, 542, 628 |
| BseRI | GAGGAG | 5 cut(s) | 104, 131, 275, 933, 1054 |
| BseSI | GKGCMC | 1 cut(s) | 1096 |
| BseXI | GCAGC | 4 cut(s) | 394, 397, 416, 1156 |
| BseYI | CCCAGC | 1 cut(s) | 197 |
| Bsh1236I | CGCG | 1 cut(s) | 41 |
| Bsh1285I | CGRYCG | 1 cut(s) | 525 |
| BshFI | GGCC | 3 cut(s) | 27, 33, 149 |
| BshNI | GGYRCC | 1 cut(s) | 67 |
| BsiEI | CGRYCG | 1 cut(s) | 525 |
| BsiSI | CCGG | 6 cut(s) | 65, 71, 95, 600, 660, 1161 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 70, 703, 953, 1085, 1090 |
| BsmAI | GTCTC | 4 cut(s) | 500, 523, 571, 743 |
| BsnI | GGCC | 3 cut(s) | 27, 33, 149 |
| Bso31I | GGTCTC | 1 cut(s) | 571 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1096 |
| Bsp13I | TCCGGA | 1 cut(s) | 659 |
| Bsp143I | GATC | 4 cut(s) | 832, 975, 1097, 1163 |
| BspACI | CCGC | 4 cut(s) | 39, 53, 56, 1128 |
| BspANI | GGCC | 3 cut(s) | 27, 33, 149 |
| BspCNI | CTCAG | 3 cut(s) | 169, 417, 581 |
| BspEI | TCCGGA | 1 cut(s) | 659 |
| BspFNI | CGCG | 1 cut(s) | 41 |
| BspLI | GGNNCC | 4 cut(s) | 69, 93, 120, 884 |
| BspMI | ACCTGC | 2 cut(s) | 74, 796 |
| BspPI | GGATC | 2 cut(s) | 827, 1171 |
| BspT107I | GGYRCC | 1 cut(s) | 67 |
| BspTNI | GGTCTC | 1 cut(s) | 571 |
| BsrDI | GCAATG | 1 cut(s) | 289 |
| BsrI | ACTGG | 4 cut(s) | 497, 513, 542, 628 |
| BssECI | CCNNGG | 7 cut(s) | 21, 22, 28, 63, 150, 836, 1084 |
| BssMI | GATC | 4 cut(s) | 832, 975, 1097, 1163 |
| BssNI | GRCGYC | 2 cut(s) | 68, 656 |
| BssSI | CACGAG | 1 cut(s) | 1002 |
| BssT1I | CCWWGG | 3 cut(s) | 28, 150, 836 |
| Bst2BI | CACGAG | 1 cut(s) | 1002 |
| Bst2UI | CCWGG | 3 cut(s) | 23, 401, 887 |
| Bst4CI | ACNGT | 3 cut(s) | 208, 874, 1085 |
| BstACI | GRCGYC | 2 cut(s) | 68, 656 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 410 |
| BstBAI | YACGTR | 1 cut(s) | 1013 |
| BstC8I | GCNNGC | 2 cut(s) | 81, 909 |
| BstDEI | CTNAG | 3 cut(s) | 156, 425, 568 |
| BstDSI | CCRYGG | 1 cut(s) | 1084 |
| BstF5I | GGATG | 4 cut(s) | 508, 868, 967, 1094 |
| BstFNI | CGCG | 1 cut(s) | 41 |
| BstH2I | RGCGCY | 1 cut(s) | 71 |
| BstHHI | GCGC | 3 cut(s) | 43, 70, 1074 |
| BstKTI | GATC | 4 cut(s) | 835, 978, 1100, 1166 |
| BstMAI | GTCTC | 4 cut(s) | 500, 523, 571, 743 |
| BstMBI | GATC | 4 cut(s) | 832, 975, 1097, 1163 |
| BstMCI | CGRYCG | 1 cut(s) | 525 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 47, 76, 410 |
| BstNI | CCWGG | 3 cut(s) | 23, 401, 887 |
| BstSCI | CCNGG | 5 cut(s) | 21, 63, 399, 885, 1159 |
| BstSFI | CTRYAG | 2 cut(s) | 14, 901 |
| BstSLI | GKGCMC | 1 cut(s) | 1096 |
| BstUI | CGCG | 1 cut(s) | 41 |
| BstV1I | GCAGC | 4 cut(s) | 394, 397, 416, 1156 |
| BstV2I | GAAGAC | 5 cut(s) | 108, 117, 138, 474, 593 |
| BstX2I | RGATCY | 1 cut(s) | 1163 |
| BstYI | RGATCY | 1 cut(s) | 1163 |
| BsuRI | GGCC | 3 cut(s) | 27, 33, 149 |
| BtgI | CCRYGG | 1 cut(s) | 1084 |
| BtsCI | GGATG | 4 cut(s) | 508, 868, 967, 1094 |
| BtsI | GCAGTG | 1 cut(s) | 1000 |
| BtsIMutI | CAGTG | 4 cut(s) | 204, 434, 520, 1000 |
| BveI | ACCTGC | 2 cut(s) | 74, 796 |
| Cac8I | GCNNGC | 2 cut(s) | 81, 909 |
| CaiI | CAGNNNCTG | 2 cut(s) | 410, 811 |
| CfoI | GCGC | 3 cut(s) | 43, 70, 1074 |
| Cfr13I | GGNCC | 1 cut(s) | 25 |
| CseI | GACGC | 1 cut(s) | 381 |
| CviAII | CATG | 5 cut(s) | 166, 256, 335, 455, 545 |
| DdeI | CTNAG | 3 cut(s) | 156, 425, 568 |
| DinI | GGCGCC | 1 cut(s) | 69 |
| DpnI | GATC | 4 cut(s) | 834, 977, 1099, 1165 |
| DpnII | GATC | 4 cut(s) | 832, 975, 1097, 1163 |
| EaeI | YGGCCR | 1 cut(s) | 147 |
| EciI | GGCGGA | 1 cut(s) | 42 |
| Eco130I | CCWWGG | 3 cut(s) | 28, 150, 836 |
| Eco31I | GGTCTC | 1 cut(s) | 571 |
| Eco57I | CTGAAG | 1 cut(s) | 605 |
| EcoRII | CCWGG | 3 cut(s) | 21, 399, 885 |
| EcoT14I | CCWWGG | 3 cut(s) | 28, 150, 836 |
| EgeI | GGCGCC | 1 cut(s) | 69 |
| EheI | GGCGCC | 1 cut(s) | 69 |
| ErhI | CCWWGG | 3 cut(s) | 28, 150, 836 |
| FaeI | CATG | 5 cut(s) | 169, 259, 338, 458, 548 |
| FaiI | YATR | 8 cut(s) | 167, 257, 300, 336, 456, 546, 592, 680 |
| FatI | CATG | 5 cut(s) | 165, 255, 334, 454, 544 |
| Fnu4HI | GCNGC | 6 cut(s) | 39, 56, 405, 408, 411, 1145 |
| FokI | GGATG | 4 cut(s) | 515, 875, 974, 1101 |
| Fsp4HI | GCNGC | 6 cut(s) | 39, 56, 405, 408, 411, 1145 |
| FspBI | CTAG | 3 cut(s) | 314, 735, 1101 |
| GlaI | GCGC | 3 cut(s) | 42, 69, 1073 |
| GluI | GCNGC | 6 cut(s) | 39, 56, 405, 408, 411, 1145 |
| GsaI | CCCAGC | 1 cut(s) | 201 |
| HaeII | RGCGCY | 1 cut(s) | 71 |
| HaeIII | GGCC | 3 cut(s) | 27, 33, 149 |
| HapII | CCGG | 6 cut(s) | 65, 71, 95, 600, 660, 1161 |
| HgaI | GACGC | 1 cut(s) | 381 |
| HhaI | GCGC | 3 cut(s) | 43, 70, 1074 |
| Hin1I | GRCGYC | 2 cut(s) | 68, 656 |
| Hin1II | CATG | 5 cut(s) | 169, 259, 338, 458, 548 |
| Hin6I | GCGC | 3 cut(s) | 41, 68, 1072 |
| HinP1I | GCGC | 3 cut(s) | 41, 68, 1072 |
| HincII | GTYRAC | 2 cut(s) | 654, 1152 |
| HindII | GTYRAC | 2 cut(s) | 654, 1152 |
| HinfI | GANTC | 5 cut(s) | 74, 710, 731, 998, 1061 |
| HpaII | CCGG | 6 cut(s) | 65, 71, 95, 600, 660, 1161 |
| HphI | GGTGA | 4 cut(s) | 98, 508, 1046, 1149 |
| Hpy166II | GTNNAC | 3 cut(s) | 434, 654, 1152 |
| Hpy188I | TCNGA | 5 cut(s) | 159, 376, 426, 571, 726 |
| Hpy188III | TCNNGA | 6 cut(s) | 233, 329, 660, 812, 1004, 1101 |
| Hpy8I | GTNNAC | 3 cut(s) | 434, 654, 1152 |
| Hpy99I | CGWCG | 2 cut(s) | 11, 110 |
| HpyAV | CCTTC | 7 cut(s) | 721, 779, 872, 959, 1102, 1107, 1118 |
| HpyCH4III | ACNGT | 3 cut(s) | 208, 874, 1085 |
| HpyCH4IV | ACGT | 4 cut(s) | 471, 656, 925, 1012 |
| HpyCH4V | TGCA | 1 cut(s) | 413 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 47, 76, 410 |
| HpyF3I | CTNAG | 3 cut(s) | 156, 425, 568 |
| HpySE526I | ACGT | 4 cut(s) | 471, 656, 925, 1012 |
| Hsp92I | GRCGYC | 2 cut(s) | 68, 656 |
| Hsp92II | CATG | 5 cut(s) | 169, 259, 338, 458, 548 |
| HspAI | GCGC | 3 cut(s) | 41, 68, 1072 |
| KasI | GGCGCC | 1 cut(s) | 67 |
| Kpn2I | TCCGGA | 1 cut(s) | 659 |
| Kzo9I | GATC | 4 cut(s) | 832, 975, 1097, 1163 |
| LmnI | GCTCC | 3 cut(s) | 55, 91, 118 |
| Lsp1109I | GCAGC | 4 cut(s) | 394, 397, 416, 1156 |
| LweI | GCATC | 1 cut(s) | 845 |
| MaeI | CTAG | 3 cut(s) | 314, 735, 1101 |
| MaeII | ACGT | 4 cut(s) | 471, 656, 925, 1012 |
| MaeIII | GTNAC | 1 cut(s) | 841 |
| MalI | GATC | 4 cut(s) | 834, 977, 1099, 1165 |
| MboI | GATC | 4 cut(s) | 832, 975, 1097, 1163 |
| MflI | RGATCY | 1 cut(s) | 1163 |
| MhlI | GDGCHC | 1 cut(s) | 1096 |
| MlsI | TGGCCA | 1 cut(s) | 149 |
| MluCI | AATT | 2 cut(s) | 350, 1028 |
| MluNI | TGGCCA | 1 cut(s) | 149 |
| Mly113I | GGCGCC | 1 cut(s) | 68 |
| MlyI | GAGTC | 2 cut(s) | 719, 1055 |
| Mox20I | TGGCCA | 1 cut(s) | 149 |
| MroI | TCCGGA | 1 cut(s) | 659 |
| MscI | TGGCCA | 1 cut(s) | 149 |
| MseI | TTAA | 2 cut(s) | 353, 743 |
| MslI | CAYNNNNRTG | 1 cut(s) | 828 |
| Msp20I | TGGCCA | 1 cut(s) | 149 |
| MspA1I | CMGCKG | 2 cut(s) | 407, 1147 |
| MspI | CCGG | 6 cut(s) | 65, 71, 95, 600, 660, 1161 |
| MspR9I | CCNGG | 5 cut(s) | 23, 65, 401, 887, 1161 |
| MvaI | CCWGG | 3 cut(s) | 23, 401, 887 |
| MvnI | CGCG | 1 cut(s) | 41 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 47, 76, 410 |
| NarI | GGCGCC | 1 cut(s) | 68 |
| NciI | CCSGG | 2 cut(s) | 65, 1161 |
| NdeII | GATC | 4 cut(s) | 832, 975, 1097, 1163 |
| NlaIII | CATG | 5 cut(s) | 169, 259, 338, 458, 548 |
| NlaIV | GGNNCC | 4 cut(s) | 69, 93, 120, 884 |
| PaqCI | CACCTGC | 1 cut(s) | 74 |
| PasI | CCCWGGG | 1 cut(s) | 22 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 111, 1009 |
| PfeI | GAWTC | 3 cut(s) | 74, 731, 998 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 953 |
| PkrI | GCNGC | 6 cut(s) | 40, 57, 406, 409, 412, 1146 |
| PleI | GAGTC | 2 cut(s) | 718, 1055 |
| PluTI | GGCGCC | 1 cut(s) | 71 |
| PpsI | GAGTC | 2 cut(s) | 718, 1055 |
| Ppu21I | YACGTR | 1 cut(s) | 1013 |
| PshBI | ATTAAT | 1 cut(s) | 353 |
| Psp1406I | AACGTT | 1 cut(s) | 925 |
| Psp6I | CCWGG | 3 cut(s) | 21, 399, 885 |
| PspFI | CCCAGC | 1 cut(s) | 197 |
| PspGI | CCWGG | 3 cut(s) | 21, 399, 885 |
| PspN4I | GGNNCC | 4 cut(s) | 69, 93, 120, 884 |
| PspPI | GGNCC | 1 cut(s) | 25 |
| PstNI | CAGNNNCTG | 2 cut(s) | 410, 811 |
| PsuI | RGATCY | 1 cut(s) | 1163 |
| PvuII | CAGCTG | 2 cut(s) | 407, 1147 |
| RseI | CAYNNNNRTG | 1 cut(s) | 828 |
| SaqAI | TTAA | 2 cut(s) | 353, 743 |
| SatI | GCNGC | 6 cut(s) | 39, 56, 405, 408, 411, 1145 |
| Sau3AI | GATC | 4 cut(s) | 832, 975, 1097, 1163 |
| Sau96I | GGNCC | 1 cut(s) | 25 |
| SchI | GAGTC | 2 cut(s) | 719, 1055 |
| ScrFI | CCNGG | 5 cut(s) | 23, 65, 401, 887, 1161 |
| SduI | GDGCHC | 1 cut(s) | 1096 |
| SfaNI | GCATC | 1 cut(s) | 845 |
| SfcI | CTRYAG | 2 cut(s) | 14, 901 |
| SfoI | GGCGCC | 1 cut(s) | 69 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 828 |
| SmlI | CTYRAG | 1 cut(s) | 1066 |
| SmoI | CTYRAG | 1 cut(s) | 1066 |
| Sse9I | AATT | 2 cut(s) | 350, 1028 |
| SsiI | CCGC | 4 cut(s) | 39, 53, 56, 1128 |
| SspDI | GGCGCC | 1 cut(s) | 67 |
| SspMI | CTAG | 3 cut(s) | 314, 735, 1101 |
| StyD4I | CCNGG | 5 cut(s) | 21, 63, 399, 885, 1159 |
| StyI | CCWWGG | 3 cut(s) | 28, 150, 836 |
| TaaI | ACNGT | 3 cut(s) | 208, 874, 1085 |
| TaiI | ACGT | 4 cut(s) | 474, 659, 928, 1015 |
| TaqI | TCGA | 2 cut(s) | 525, 713 |
| TaqII | GACCGA | 1 cut(s) | 511 |
| TasI | AATT | 2 cut(s) | 350, 1028 |
| TauI | GCSGC | 2 cut(s) | 41, 58 |
| TfiI | GAWTC | 3 cut(s) | 74, 731, 998 |
| Tru1I | TTAA | 2 cut(s) | 353, 743 |
| Tru9I | TTAA | 2 cut(s) | 353, 743 |
| TscAI | CASTG | 4 cut(s) | 211, 441, 520, 1000 |
| TseI | GCWGC | 4 cut(s) | 404, 407, 410, 1144 |
| TspDTI | ATGAA | 5 cut(s) | 144, 153, 798, 978, 1059 |
| TspGWI | ACGGA | 2 cut(s) | 385, 686 |
| TspRI | CASTG | 4 cut(s) | 211, 441, 520, 1000 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 953 |
| VspI | ATTAAT | 1 cut(s) | 353 |
| XapI | RAATTY | 1 cut(s) | 1028 |
| XbaI | TCTAGA | 1 cut(s) | 1100 |
| XspI | CTAG | 3 cut(s) | 314, 735, 1101 |
| ZraI | GACGTC | 1 cut(s) | 657 |