Rh6BG524200

DDB1- and CUL4-associated factor homolog

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
71647334 .. 71649172
1839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG524200.1

Sequence Viewer

Length: 1191 bp
ATGGACGACGAGCTACAGACCCAGGGCCAAGGCCAAGCCGCGCCACCAGCTCCGCCGCCTCCCCCGGCGCCGGAATCGCAGGCAGGTGAGGAGCCGGAGGAAGACGACGAAGACGAGGAGCCGAAGAATGAAGACGATGAAATGGTGGCCAAGGCTCAGAAGCTCATGGATAAGGTTATTGCTTCGCCTGATAACCCCAGCCCCACTGTTCTTCACGCCCTCGCTTCACTTCTTGAAACGCAGGAGAAACGATACATGGAGGAGAGTGGTCATTCTTCCAGCAATGGTCGTGCTTCTCATAACATTGGACGGCTAGGGAACTTGGTTCGGGAACATGATGACTTCTTTGAATTAATATCTGCCAAGTATTTGTCAGATACGAGATACTCTGCGTCCGTCCAGGCAGCTGCTGCAAGGCTGTTTCTGAGCTGTTCACTGACTTTGATTTATCCTCATGTTTTTGAAGAAGACGTTTTGGAGAAAATAAAGGACTGGGTGATGGATGAGACTTCCAGTGTCTCGGTCGAATACCAGAACTGGAAGCATGATTTGGGAGGAAAGGAGGTCTCAGATTTTGAAATGCTGAAGACATATTCTACCGGACTTCTTGCTGTTTGTTTGACTGGGGGTGGTCAGGTAGTGGAAGATGTGTTGACGTCCGGATTGTCAGCCAAACTTATGCGTTATCTTCGTGTCCGTGTTTTGGGGGAGTCGAGTATTAGTCAGAAGGATTCTAGTCATTTAACAGAGACTAAAAACACCTCTGGTGTAAGAGGTAGAGATGAAGGTCGGGGTAGGGTTCGGCAGGTTCTGGAAACAACTCATTTTGATGATCCAAGGGTAACAAGTGAGAGATGCTTGGATGACCAGACTGTTGAAGGGAACCAGGACAGAAGTATCTGTAGGCAAGCGTTTGGAGGAGAACGTTGGGTTGATGATGGAGAACCACCTGATGGAATGGATGAAGGGGTTGAGATCAATGATGTTGATGGCAGTGATTCTCGTGATTTACGTGATGGGAAACAAAAATTTGGTGATTTTGATGAAAATGGGAGAGATGACTCCTCAAGGCGCAGACCTAACCGTGGATGGGCACGATCTAGAGGGAAGGGAAGGGCAAACGAAGGCGGTGTAGAAAATGAGCAGCTGTTGACCTCACCCGGATCTGCTATTCGGTTGGGACAGGGGTGA

Protein Analysis

396

Amino Acids

43.7

Weight (kDa)

4.66

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 74
AatII GACGTC 1 cut(s) 659
Acc36I ACCTGC 2 cut(s) 74, 796
AccB1I GGYRCC 1 cut(s) 67
AccB7I CCANNNNNTGG 1 cut(s) 953
AccII CGCG 1 cut(s) 41
AccIII TCCGGA 1 cut(s) 659
AciI CCGC 4 cut(s) 39, 53, 56, 1128
AclI AACGTT 1 cut(s) 925
AclWI GGATC 2 cut(s) 827, 1171
AcoI YGGCCR 1 cut(s) 147
AcsI RAATTY 1 cut(s) 1028
AcuI CTGAAG 1 cut(s) 605
AcyI GRCGYC 2 cut(s) 68, 656
AfiI CCNNNNNNNGG 5 cut(s) 70, 703, 953, 1085, 1090
AgsI TTSAA 5 cut(s) 236, 350, 464, 578, 878
AjnI CCWGG 3 cut(s) 21, 399, 885
AjuI GAANNNNNNNTTGG 2 cut(s) 533, 565
AluBI AGCT 6 cut(s) 13, 50, 163, 407, 429, 1147
AluI AGCT 6 cut(s) 13, 50, 163, 407, 429, 1147
Alw26I GTCTC 4 cut(s) 500, 523, 571, 743
AlwI GGATC 2 cut(s) 827, 1171
AlwNI CAGNNNCTG 2 cut(s) 410, 811
Aor13HI TCCGGA 1 cut(s) 659
AoxI GGCC 3 cut(s) 25, 31, 147
ApeKI GCWGC 4 cut(s) 404, 407, 410, 1144
ApoI RAATTY 1 cut(s) 1028
AseI ATTAAT 1 cut(s) 353
AspLEI GCGC 3 cut(s) 43, 70, 1074
AspS9I GGNCC 1 cut(s) 25
AsuC2I CCSGG 2 cut(s) 65, 1161
AsuHPI GGTGA 4 cut(s) 98, 508, 1046, 1149
BaeGI GKGCMC 1 cut(s) 1096
BaeI ACNNNNGTAYC 2 cut(s) 880, 913
BalI TGGCCA 1 cut(s) 149
BanI GGYRCC 1 cut(s) 67
BauI CACGAG 1 cut(s) 1002
BbsI GAAGAC 5 cut(s) 108, 117, 138, 474, 593
BbvI GCAGC 4 cut(s) 394, 397, 416, 1156
BccI CCATC 6 cut(s) 493, 932, 947, 983, 1010, 1083
BceAI ACGGC 1 cut(s) 326
BciT130I CCWGG 3 cut(s) 23, 401, 887
BcnI CCSGG 2 cut(s) 65, 1161
BcoDI GTCTC 4 cut(s) 500, 523, 571, 743
BfaI CTAG 3 cut(s) 314, 735, 1101
BfmI CTRYAG 2 cut(s) 14, 901
BfoI RGCGCY 1 cut(s) 71
BfuAI ACCTGC 2 cut(s) 74, 796
BisI GCNGC 6 cut(s) 39, 56, 405, 408, 411, 1145
BlsI GCNGC 6 cut(s) 40, 57, 406, 409, 412, 1146
Bme1390I CCNGG 5 cut(s) 23, 65, 401, 887, 1161
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 4 cut(s) 69, 93, 120, 884
BmrFI CCNGG 5 cut(s) 23, 65, 401, 887, 1161
BmrI ACTGGG 2 cut(s) 502, 633
BmsI GCATC 1 cut(s) 845
BmuI ACTGGG 2 cut(s) 502, 633
BpiI GAAGAC 5 cut(s) 108, 117, 138, 474, 593
BpuEI CTTGAG 1 cut(s) 1051
BpuMI CCSGG 2 cut(s) 65, 1161
BsaAI YACGTR 1 cut(s) 1013
BsaHI GRCGYC 2 cut(s) 68, 656
BsaI GGTCTC 1 cut(s) 571
BsaJI CCNNGG 7 cut(s) 21, 22, 28, 63, 150, 836, 1084
BsaWI WCCGGW 2 cut(s) 599, 659
Bsc4I CCNNNNNNNGG 5 cut(s) 70, 703, 953, 1085, 1090
Bse1I ACTGG 4 cut(s) 497, 513, 542, 628
Bse3DI GCAATG 1 cut(s) 289
BseAI TCCGGA 1 cut(s) 659
BseBI CCWGG 3 cut(s) 23, 401, 887
BseDI CCNNGG 7 cut(s) 21, 22, 28, 63, 150, 836, 1084
BseGI GGATG 4 cut(s) 508, 868, 967, 1094
BseLI CCNNNNNNNGG 5 cut(s) 70, 703, 953, 1085, 1090
BseMI GCAATG 1 cut(s) 289
BseMII CTCAG 3 cut(s) 170, 416, 582
BseNI ACTGG 4 cut(s) 497, 513, 542, 628
BseRI GAGGAG 5 cut(s) 104, 131, 275, 933, 1054
BseSI GKGCMC 1 cut(s) 1096
BseXI GCAGC 4 cut(s) 394, 397, 416, 1156
BseYI CCCAGC 1 cut(s) 197
Bsh1236I CGCG 1 cut(s) 41
Bsh1285I CGRYCG 1 cut(s) 525
BshFI GGCC 3 cut(s) 27, 33, 149
BshNI GGYRCC 1 cut(s) 67
BsiEI CGRYCG 1 cut(s) 525
BsiSI CCGG 6 cut(s) 65, 71, 95, 600, 660, 1161
BslI CCNNNNNNNGG 5 cut(s) 70, 703, 953, 1085, 1090
BsmAI GTCTC 4 cut(s) 500, 523, 571, 743
BsnI GGCC 3 cut(s) 27, 33, 149
Bso31I GGTCTC 1 cut(s) 571
Bsp1286I GDGCHC 1 cut(s) 1096
Bsp13I TCCGGA 1 cut(s) 659
Bsp143I GATC 4 cut(s) 832, 975, 1097, 1163
BspACI CCGC 4 cut(s) 39, 53, 56, 1128
BspANI GGCC 3 cut(s) 27, 33, 149
BspCNI CTCAG 3 cut(s) 169, 417, 581
BspEI TCCGGA 1 cut(s) 659
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 4 cut(s) 69, 93, 120, 884
BspMI ACCTGC 2 cut(s) 74, 796
BspPI GGATC 2 cut(s) 827, 1171
BspT107I GGYRCC 1 cut(s) 67
BspTNI GGTCTC 1 cut(s) 571
BsrDI GCAATG 1 cut(s) 289
BsrI ACTGG 4 cut(s) 497, 513, 542, 628
BssECI CCNNGG 7 cut(s) 21, 22, 28, 63, 150, 836, 1084
BssMI GATC 4 cut(s) 832, 975, 1097, 1163
BssNI GRCGYC 2 cut(s) 68, 656
BssSI CACGAG 1 cut(s) 1002
BssT1I CCWWGG 3 cut(s) 28, 150, 836
Bst2BI CACGAG 1 cut(s) 1002
Bst2UI CCWGG 3 cut(s) 23, 401, 887
Bst4CI ACNGT 3 cut(s) 208, 874, 1085
BstACI GRCGYC 2 cut(s) 68, 656
BstAPI GCANNNNNTGC 1 cut(s) 410
BstBAI YACGTR 1 cut(s) 1013
BstC8I GCNNGC 2 cut(s) 81, 909
BstDEI CTNAG 3 cut(s) 156, 425, 568
BstDSI CCRYGG 1 cut(s) 1084
BstF5I GGATG 4 cut(s) 508, 868, 967, 1094
BstFNI CGCG 1 cut(s) 41
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 3 cut(s) 43, 70, 1074
BstKTI GATC 4 cut(s) 835, 978, 1100, 1166
BstMAI GTCTC 4 cut(s) 500, 523, 571, 743
BstMBI GATC 4 cut(s) 832, 975, 1097, 1163
BstMCI CGRYCG 1 cut(s) 525
BstMWI GCNNNNNNNGC 3 cut(s) 47, 76, 410
BstNI CCWGG 3 cut(s) 23, 401, 887
BstSCI CCNGG 5 cut(s) 21, 63, 399, 885, 1159
BstSFI CTRYAG 2 cut(s) 14, 901
BstSLI GKGCMC 1 cut(s) 1096
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 4 cut(s) 394, 397, 416, 1156
BstV2I GAAGAC 5 cut(s) 108, 117, 138, 474, 593
BstX2I RGATCY 1 cut(s) 1163
BstYI RGATCY 1 cut(s) 1163
BsuRI GGCC 3 cut(s) 27, 33, 149
BtgI CCRYGG 1 cut(s) 1084
BtsCI GGATG 4 cut(s) 508, 868, 967, 1094
BtsI GCAGTG 1 cut(s) 1000
BtsIMutI CAGTG 4 cut(s) 204, 434, 520, 1000
BveI ACCTGC 2 cut(s) 74, 796
Cac8I GCNNGC 2 cut(s) 81, 909
CaiI CAGNNNCTG 2 cut(s) 410, 811
CfoI GCGC 3 cut(s) 43, 70, 1074
Cfr13I GGNCC 1 cut(s) 25
CseI GACGC 1 cut(s) 381
CviAII CATG 5 cut(s) 166, 256, 335, 455, 545
DdeI CTNAG 3 cut(s) 156, 425, 568
DinI GGCGCC 1 cut(s) 69
DpnI GATC 4 cut(s) 834, 977, 1099, 1165
DpnII GATC 4 cut(s) 832, 975, 1097, 1163
EaeI YGGCCR 1 cut(s) 147
EciI GGCGGA 1 cut(s) 42
Eco130I CCWWGG 3 cut(s) 28, 150, 836
Eco31I GGTCTC 1 cut(s) 571
Eco57I CTGAAG 1 cut(s) 605
EcoRII CCWGG 3 cut(s) 21, 399, 885
EcoT14I CCWWGG 3 cut(s) 28, 150, 836
EgeI GGCGCC 1 cut(s) 69
EheI GGCGCC 1 cut(s) 69
ErhI CCWWGG 3 cut(s) 28, 150, 836
FaeI CATG 5 cut(s) 169, 259, 338, 458, 548
FaiI YATR 8 cut(s) 167, 257, 300, 336, 456, 546, 592, 680
FatI CATG 5 cut(s) 165, 255, 334, 454, 544
Fnu4HI GCNGC 6 cut(s) 39, 56, 405, 408, 411, 1145
FokI GGATG 4 cut(s) 515, 875, 974, 1101
Fsp4HI GCNGC 6 cut(s) 39, 56, 405, 408, 411, 1145
FspBI CTAG 3 cut(s) 314, 735, 1101
GlaI GCGC 3 cut(s) 42, 69, 1073
GluI GCNGC 6 cut(s) 39, 56, 405, 408, 411, 1145
GsaI CCCAGC 1 cut(s) 201
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 3 cut(s) 27, 33, 149
HapII CCGG 6 cut(s) 65, 71, 95, 600, 660, 1161
HgaI GACGC 1 cut(s) 381
HhaI GCGC 3 cut(s) 43, 70, 1074
Hin1I GRCGYC 2 cut(s) 68, 656
Hin1II CATG 5 cut(s) 169, 259, 338, 458, 548
Hin6I GCGC 3 cut(s) 41, 68, 1072
HinP1I GCGC 3 cut(s) 41, 68, 1072
HincII GTYRAC 2 cut(s) 654, 1152
HindII GTYRAC 2 cut(s) 654, 1152
HinfI GANTC 5 cut(s) 74, 710, 731, 998, 1061
HpaII CCGG 6 cut(s) 65, 71, 95, 600, 660, 1161
HphI GGTGA 4 cut(s) 98, 508, 1046, 1149
Hpy166II GTNNAC 3 cut(s) 434, 654, 1152
Hpy188I TCNGA 5 cut(s) 159, 376, 426, 571, 726
Hpy188III TCNNGA 6 cut(s) 233, 329, 660, 812, 1004, 1101
Hpy8I GTNNAC 3 cut(s) 434, 654, 1152
Hpy99I CGWCG 2 cut(s) 11, 110
HpyAV CCTTC 7 cut(s) 721, 779, 872, 959, 1102, 1107, 1118
HpyCH4III ACNGT 3 cut(s) 208, 874, 1085
HpyCH4IV ACGT 4 cut(s) 471, 656, 925, 1012
HpyCH4V TGCA 1 cut(s) 413
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 76, 410
HpyF3I CTNAG 3 cut(s) 156, 425, 568
HpySE526I ACGT 4 cut(s) 471, 656, 925, 1012
Hsp92I GRCGYC 2 cut(s) 68, 656
Hsp92II CATG 5 cut(s) 169, 259, 338, 458, 548
HspAI GCGC 3 cut(s) 41, 68, 1072
KasI GGCGCC 1 cut(s) 67
Kpn2I TCCGGA 1 cut(s) 659
Kzo9I GATC 4 cut(s) 832, 975, 1097, 1163
LmnI GCTCC 3 cut(s) 55, 91, 118
Lsp1109I GCAGC 4 cut(s) 394, 397, 416, 1156
LweI GCATC 1 cut(s) 845
MaeI CTAG 3 cut(s) 314, 735, 1101
MaeII ACGT 4 cut(s) 471, 656, 925, 1012
MaeIII GTNAC 1 cut(s) 841
MalI GATC 4 cut(s) 834, 977, 1099, 1165
MboI GATC 4 cut(s) 832, 975, 1097, 1163
MflI RGATCY 1 cut(s) 1163
MhlI GDGCHC 1 cut(s) 1096
MlsI TGGCCA 1 cut(s) 149
MluCI AATT 2 cut(s) 350, 1028
MluNI TGGCCA 1 cut(s) 149
Mly113I GGCGCC 1 cut(s) 68
MlyI GAGTC 2 cut(s) 719, 1055
Mox20I TGGCCA 1 cut(s) 149
MroI TCCGGA 1 cut(s) 659
MscI TGGCCA 1 cut(s) 149
MseI TTAA 2 cut(s) 353, 743
MslI CAYNNNNRTG 1 cut(s) 828
Msp20I TGGCCA 1 cut(s) 149
MspA1I CMGCKG 2 cut(s) 407, 1147
MspI CCGG 6 cut(s) 65, 71, 95, 600, 660, 1161
MspR9I CCNGG 5 cut(s) 23, 65, 401, 887, 1161
MvaI CCWGG 3 cut(s) 23, 401, 887
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 3 cut(s) 47, 76, 410
NarI GGCGCC 1 cut(s) 68
NciI CCSGG 2 cut(s) 65, 1161
NdeII GATC 4 cut(s) 832, 975, 1097, 1163
NlaIII CATG 5 cut(s) 169, 259, 338, 458, 548
NlaIV GGNNCC 4 cut(s) 69, 93, 120, 884
PaqCI CACCTGC 1 cut(s) 74
PasI CCCWGGG 1 cut(s) 22
PcsI WCGNNNNNNNCGW 2 cut(s) 111, 1009
PfeI GAWTC 3 cut(s) 74, 731, 998
PflMI CCANNNNNTGG 1 cut(s) 953
PkrI GCNGC 6 cut(s) 40, 57, 406, 409, 412, 1146
PleI GAGTC 2 cut(s) 718, 1055
PluTI GGCGCC 1 cut(s) 71
PpsI GAGTC 2 cut(s) 718, 1055
Ppu21I YACGTR 1 cut(s) 1013
PshBI ATTAAT 1 cut(s) 353
Psp1406I AACGTT 1 cut(s) 925
Psp6I CCWGG 3 cut(s) 21, 399, 885
PspFI CCCAGC 1 cut(s) 197
PspGI CCWGG 3 cut(s) 21, 399, 885
PspN4I GGNNCC 4 cut(s) 69, 93, 120, 884
PspPI GGNCC 1 cut(s) 25
PstNI CAGNNNCTG 2 cut(s) 410, 811
PsuI RGATCY 1 cut(s) 1163
PvuII CAGCTG 2 cut(s) 407, 1147
RseI CAYNNNNRTG 1 cut(s) 828
SaqAI TTAA 2 cut(s) 353, 743
SatI GCNGC 6 cut(s) 39, 56, 405, 408, 411, 1145
Sau3AI GATC 4 cut(s) 832, 975, 1097, 1163
Sau96I GGNCC 1 cut(s) 25
SchI GAGTC 2 cut(s) 719, 1055
ScrFI CCNGG 5 cut(s) 23, 65, 401, 887, 1161
SduI GDGCHC 1 cut(s) 1096
SfaNI GCATC 1 cut(s) 845
SfcI CTRYAG 2 cut(s) 14, 901
SfoI GGCGCC 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 828
SmlI CTYRAG 1 cut(s) 1066
SmoI CTYRAG 1 cut(s) 1066
Sse9I AATT 2 cut(s) 350, 1028
SsiI CCGC 4 cut(s) 39, 53, 56, 1128
SspDI GGCGCC 1 cut(s) 67
SspMI CTAG 3 cut(s) 314, 735, 1101
StyD4I CCNGG 5 cut(s) 21, 63, 399, 885, 1159
StyI CCWWGG 3 cut(s) 28, 150, 836
TaaI ACNGT 3 cut(s) 208, 874, 1085
TaiI ACGT 4 cut(s) 474, 659, 928, 1015
TaqI TCGA 2 cut(s) 525, 713
TaqII GACCGA 1 cut(s) 511
TasI AATT 2 cut(s) 350, 1028
TauI GCSGC 2 cut(s) 41, 58
TfiI GAWTC 3 cut(s) 74, 731, 998
Tru1I TTAA 2 cut(s) 353, 743
Tru9I TTAA 2 cut(s) 353, 743
TscAI CASTG 4 cut(s) 211, 441, 520, 1000
TseI GCWGC 4 cut(s) 404, 407, 410, 1144
TspDTI ATGAA 5 cut(s) 144, 153, 798, 978, 1059
TspGWI ACGGA 2 cut(s) 385, 686
TspRI CASTG 4 cut(s) 211, 441, 520, 1000
Van91I CCANNNNNTGG 1 cut(s) 953
VspI ATTAAT 1 cut(s) 353
XapI RAATTY 1 cut(s) 1028
XbaI TCTAGA 1 cut(s) 1100
XspI CTAG 3 cut(s) 314, 735, 1101
ZraI GACGTC 1 cut(s) 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.