RchiOBHm_Chr5g0032161

aspartate--tRNA ligase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
25841507 .. 25841851
345 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31136

Sequence Viewer

Length: 345 bp
ATGGCGTTTACTGTGGTCAGAAAGAAGGGGTTCACGGTTCAGTGCGTAGTGACGGTTCAGCCGGAGATTGTGAGCCGTCAGACGGTGAAGTACGTGGCATCGTTGAGCGGCTCGTCGATTATTGTTATTGAAGGGATAAGGGAATTAAAGGCACTTCACAGCAGGTGGAGGGTGCAATTTAGAAAGTTGTACTGTATAAGTAAGGGTGCTGTTTTGCCTTTTAACATTGAGGATGCTGCTCGAAGTGAAAAACCTAATGAGGATGGAGAACAACTGGTTCGCGTAAAACAGGATAAACGCTTAAACTACCGAGCACTTAACTTGCAAACACTGGCAAACCTGTAG

Protein Analysis

114

Amino Acids

12.96

Weight (kDa)

10.01

Isoelectric Point (pI)

49.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 153
Acc36I ACCTGC 1 cut(s) 153
AccBSI CCGCTC 1 cut(s) 108
AccII CGCG 1 cut(s) 282
AciI CCGC 1 cut(s) 108
AfaI GTAC 2 cut(s) 92, 191
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 1 cut(s) 131
Alw21I GWGCWC 1 cut(s) 316
ApeKI GCWGC 1 cut(s) 236
Asp700I GAANNNNTTC 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 97
Bbv12I GWGCWC 1 cut(s) 316
BbvI GCAGC 1 cut(s) 223
BccI CCATC 1 cut(s) 257
BceAI ACGGC 1 cut(s) 60
BfmI CTRYAG 1 cut(s) 341
BfuAI ACCTGC 1 cut(s) 153
BisI GCNGC 2 cut(s) 109, 237
BlsI GCNGC 2 cut(s) 110, 238
BmsI GCATC 2 cut(s) 107, 223
BsaAI YACGTR 1 cut(s) 94
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse1I ACTGG 2 cut(s) 279, 336
BseGI GGATG 2 cut(s) 238, 268
BseLI CCNNNNNNNGG 1 cut(s) 82
BseNI ACTGG 2 cut(s) 279, 336
BseXI GCAGC 1 cut(s) 223
Bsh1236I CGCG 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 316
BsiSI CCGG 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 82
Bsp1286I GDGCHC 1 cut(s) 316
BspACI CCGC 1 cut(s) 108
BspFNI CGCG 1 cut(s) 282
BspMI ACCTGC 1 cut(s) 153
BsrBI CCGCTC 1 cut(s) 108
BsrI ACTGG 2 cut(s) 279, 336
Bst4CI ACNGT 5 cut(s) 13, 37, 55, 85, 194
BstBAI YACGTR 1 cut(s) 94
BstF5I GGATG 2 cut(s) 238, 268
BstFNI CGCG 1 cut(s) 282
BstSFI CTRYAG 1 cut(s) 341
BstUI CGCG 1 cut(s) 282
BstV1I GCAGC 1 cut(s) 223
BtsCI GGATG 2 cut(s) 238, 268
BtsIMutI CAGTG 2 cut(s) 47, 329
BveI ACCTGC 1 cut(s) 153
Csp6I GTAC 2 cut(s) 91, 190
CviJI RGCY 3 cut(s) 61, 75, 111
CviKI_1 RGCY 3 cut(s) 61, 75, 111
CviQI GTAC 2 cut(s) 91, 190
FaiI YATR 1 cut(s) 197
Fnu4HI GCNGC 2 cut(s) 109, 237
FokI GGATG 2 cut(s) 245, 275
Fsp4HI GCNGC 2 cut(s) 109, 237
GluI GCNGC 2 cut(s) 109, 237
HapII CCGG 1 cut(s) 62
HpaII CCGG 1 cut(s) 62
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 2 cut(s) 9, 33
Hpy188I TCNGA 2 cut(s) 20, 81
Hpy8I GTNNAC 2 cut(s) 9, 33
Hpy99I CGWCG 1 cut(s) 118
HpyAV CCTTC 2 cut(s) 19, 125
HpyCH4III ACNGT 5 cut(s) 13, 37, 55, 85, 194
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 2 cut(s) 175, 325
HpySE526I ACGT 1 cut(s) 93
LpnPI CCDG 5 cut(s) 75, 148, 260, 275, 317
Lsp1109I GCAGC 1 cut(s) 223
LweI GCATC 2 cut(s) 107, 223
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 49
MbiI CCGCTC 1 cut(s) 108
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 2 cut(s) 143, 176
MnlI CCTC 3 cut(s) 162, 223, 253
MroXI GAANNNNTTC 1 cut(s) 29
MseI TTAA 4 cut(s) 146, 222, 302, 318
MspI CCGG 1 cut(s) 62
MvnI CGCG 1 cut(s) 282
NmuCI GTSAC 1 cut(s) 49
PaqCI CACCTGC 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 29
PkrI GCNGC 2 cut(s) 110, 238
Ppu21I YACGTR 1 cut(s) 94
PsrI GAACNNNNNNTAC 2 cut(s) 39, 71
RsaI GTAC 2 cut(s) 92, 191
RsaNI GTAC 2 cut(s) 91, 190
SaqAI TTAA 4 cut(s) 146, 222, 302, 318
SatI GCNGC 2 cut(s) 109, 237
SduI GDGCHC 1 cut(s) 316
SetI ASST 4 cut(s) 96, 167, 256, 342
SfaNI GCATC 2 cut(s) 107, 223
SfcI CTRYAG 1 cut(s) 341
Sse9I AATT 2 cut(s) 143, 176
SsiI CCGC 1 cut(s) 108
TaaI ACNGT 5 cut(s) 13, 37, 55, 85, 194
TaiI ACGT 1 cut(s) 96
TaqI TCGA 2 cut(s) 116, 241
TasI AATT 2 cut(s) 143, 176
TatI WGTACW 1 cut(s) 189
TauI GCSGC 1 cut(s) 111
Tru1I TTAA 4 cut(s) 146, 222, 302, 318
Tru9I TTAA 4 cut(s) 146, 222, 302, 318
TscAI CASTG 2 cut(s) 47, 336
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 1 cut(s) 236
Tsp45I GTSAC 1 cut(s) 49
TspRI CASTG 2 cut(s) 47, 336
XmnI GAANNNNTTC 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.