Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001714

Physical Location & Seq

Genomic Coordinates Reverse (-)

25836127 .. 25836423

Gene Structure 297 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31134

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCCTTGCGACGATAATCCTGAATTCAGTAATTCGTTTGATGTCTTCATTCGAGGTGAGGAGATTATATCAGGTGCACAACATATCCATGTACCAGAATTGTTGGCTGAACGTGCTGAAGCATGTGGAATTGAAGTCGAGACAATATCAACATATATTGATTCCTTCAGGTATGGTGTACCTCCCCATGGTGGATCTGGAGCAGGGCTGGAGCGTGTTGTGATGCTCTTCTGTGGTTTGAATAACATCCGCAAAACATCCTTATTCCCACGTGATCCGCGCCGGCTAGCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006422 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045202 GO:0046483 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0098542 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2 tRNA_anti-codon

Protein Analysis

98

Amino Acids

10.83

Weight (kDa)

5.04

Isoelectric Point (pI)

55.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2	PF00152	6 - 92	1.1e-24	tRNA synthetases class II (D, K and N)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26870 AT4G31180 AT4G31180
fragaria_vesca	FvH4_2g15870 FvH4_2g15910 FvH4_2g30550
malus_domestica	MD08G1134400.v1.1 MD12G1153800.v1.1 MD14G1143300.v1.1 MD15G1113400.v1.1
prunus_persica	Prupe.1G463800_v2.0.a1 Prupe.4G141600_v2.0.a1 Prupe.8G055000_v2.0.a1
pyrus_communis	pycom08g11340 pycom15g10170 pycom16g11710
rosa_chinensis	RchiOBHm_Chr5g0032141 RchiOBHm_Chr5g0032161 RchiOBHm_Chr6g0278871 RchiOBHm_Chr6g0312531
rosa_laevigata	RLG00000010321 RLG00000033368
rosa_multiflora	Rmu_co8427103.1_g000001 Rmu_sc0003031.1_g000023 Rmu_sc0005375.1_g000002 Rmu_sc0005375.1_g000011 Rmu_sc0008363.1_g000011 Rmu_sc0043080.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048240 Rroxscaffold_1G00048270 Rroxscaffold_7G00156770
rosa_rugosa	Rorug06G0119800 Rorug06G0120000 Rorug06G0123400 Rorug06G0396100 Rorug06G0396200
rosa_samantha	Rh5DG228900 Rh6AG228300 Rh6AG513500 Rh6BG233900 Rh6BG234000 Rh6BG524200 Rh6BG526500 Rh6CG236300 Rh6CG531400 Rh6DG515600
rosa_wichuraiana	Rw6G020030 Rw6G044650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	280
AciI	CCGC	2 cut(s)	250, 278
AclWI	GGATC	2 cut(s)	202, 269
AcsI	RAATTY	1 cut(s)	23
AcuI	CTGAAG	2 cut(s)	138, 151
AcvI	CACGTG	1 cut(s)	272
AfaI	GTAC	2 cut(s)	93, 180
AfiI	CCNNNNNNNGG	2 cut(s)	188, 191
AgsI	TTSAA	2 cut(s)	134, 241
AluBI	AGCT	1 cut(s)	290
AluI	AGCT	1 cut(s)	290
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	134
Alw44I	GTGCAC	1 cut(s)	75
AlwI	GGATC	2 cut(s)	202, 269
ApaLI	GTGCAC	1 cut(s)	75
ApoI	RAATTY	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	282
AsuHPI	GGTGA	1 cut(s)	68
AsuNHI	GCTAGC	1 cut(s)	286
BaeGI	GKGCMC	1 cut(s)	79
BbrPI	CACGTG	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	1 cut(s)	287
BmsI	GCATC	1 cut(s)	213
BmtI	GCTAGC	1 cut(s)	290
BpiI	GAAGAC	1 cut(s)	37
BpmI	CTGGAG	2 cut(s)	219, 230
BsaAI	YACGTR	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 191
Bse118I	RCCGGY	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	2 cut(s)	246, 257
BseLI	CCNNNNNNNGG	2 cut(s)	188, 191
BseRI	GAGGAG	1 cut(s)	74
BseSI	GKGCMC	1 cut(s)	79
Bsh1236I	CGCG	1 cut(s)	280
BsiHKAI	GWGCWC	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	283
BslI	CCNNNNNNNGG	2 cut(s)	188, 191
BsmAI	GTCTC	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	2 cut(s)	194, 274
Bsp19I	CCATGG	1 cut(s)	187
BspACI	CCGC	2 cut(s)	250, 278
BspFNI	CGCG	1 cut(s)	280
BspOI	GCTAGC	1 cut(s)	290
BspPI	GGATC	2 cut(s)	202, 269
BspQI	GCTCTTC	1 cut(s)	233
BsrFI	RCCGGY	1 cut(s)	282
BssAI	RCCGGY	1 cut(s)	282
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	2 cut(s)	194, 274
BssT1I	CCWWGG	1 cut(s)	187
Bst6I	CTCTTC	1 cut(s)	233
BstBAI	YACGTR	1 cut(s)	272
BstC8I	GCNNGC	2 cut(s)	284, 288
BstDSI	CCRYGG	1 cut(s)	187
BstF5I	GGATG	2 cut(s)	246, 257
BstFNI	CGCG	1 cut(s)	280
BstHHI	GCGC	1 cut(s)	282
BstKTI	GATC	2 cut(s)	197, 277
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	2 cut(s)	194, 274
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNSI	RCATGY	1 cut(s)	126
BstSLI	GKGCMC	1 cut(s)	79
BstUI	CGCG	1 cut(s)	280
BstV2I	GAAGAC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BtgI	CCRYGG	1 cut(s)	187
BtsCI	GGATG	2 cut(s)	246, 257
Cac8I	GCNNGC	2 cut(s)	284, 288
CfoI	GCGC	1 cut(s)	282
Cfr10I	RCCGGY	1 cut(s)	282
Csp6I	GTAC	2 cut(s)	92, 179
CviAII	CATG	3 cut(s)	89, 123, 188
CviJI	RGCY	4 cut(s)	107, 208, 286, 290
CviKI_1	RGCY	4 cut(s)	107, 208, 286, 290
CviQI	GTAC	2 cut(s)	92, 179
DpnI	GATC	2 cut(s)	196, 276
DpnII	GATC	2 cut(s)	194, 274
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Eco130I	CCWWGG	1 cut(s)	187
Eco57I	CTGAAG	2 cut(s)	138, 151
Eco72I	CACGTG	1 cut(s)	272
EcoRI	GAATTC	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	3 cut(s)	92, 126, 191
FaiI	YATR	8 cut(s)	68, 84, 90, 124, 154, 156, 174, 189
FatI	CATG	3 cut(s)	88, 122, 187
FokI	GGATG	2 cut(s)	233, 244
FspBI	CTAG	1 cut(s)	287
GlaI	GCGC	1 cut(s)	281
GsuI	CTGGAG	2 cut(s)	219, 230
HapII	CCGG	1 cut(s)	283
HhaI	GCGC	1 cut(s)	282
Hin1II	CATG	3 cut(s)	92, 126, 191
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	1 cut(s)	283
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	2 cut(s)	77, 179
Hpy188III	TCNNGA	3 cut(s)	20, 139, 198
Hpy8I	GTNNAC	2 cut(s)	77, 179
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	175
HpyCH4IV	ACGT	2 cut(s)	112, 271
HpyCH4V	TGCA	1 cut(s)	77
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpySE526I	ACGT	2 cut(s)	112, 271
Hsp92II	CATG	3 cut(s)	92, 126, 191
HspAI	GCGC	1 cut(s)	280
KroI	GCCGGC	1 cut(s)	282
KroNI	GCCGGC	1 cut(s)	284
Kzo9I	GATC	2 cut(s)	194, 274
LguI	GCTCTTC	1 cut(s)	233
LmnI	GCTCC	3 cut(s)	200, 211, 295
LpnPI	CCDG	7 cut(s)	33, 57, 108, 154, 183, 189, 194
LweI	GCATC	1 cut(s)	213
MaeI	CTAG	1 cut(s)	287
MaeII	ACGT	2 cut(s)	112, 271
MalI	GATC	2 cut(s)	196, 276
MboI	GATC	2 cut(s)	194, 274
MboII	GAAGA	2 cut(s)	37, 220
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	4 cut(s)	23, 31, 98, 129
MnlI	CCTC	3 cut(s)	47, 52, 192
MroNI	GCCGGC	1 cut(s)	282
MslI	CAYNNNNRTG	1 cut(s)	87
MspI	CCGG	1 cut(s)	283
MvnI	CGCG	1 cut(s)	280
MwoI	GCNNNNNNNGC	1 cut(s)	113
NaeI	GCCGGC	1 cut(s)	284
NcoI	CCATGG	1 cut(s)	187
NdeII	GATC	2 cut(s)	194, 274
NgoMIV	GCCGGC	1 cut(s)	282
NheI	GCTAGC	1 cut(s)	286
NlaIII	CATG	3 cut(s)	92, 126, 191
NspI	RCATGY	1 cut(s)	126
PciSI	GCTCTTC	1 cut(s)	233
PdiI	GCCGGC	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	161
PmaCI	CACGTG	1 cut(s)	272
PmlI	CACGTG	1 cut(s)	272
Ppu21I	YACGTR	1 cut(s)	272
PspCI	CACGTG	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	194
RsaI	GTAC	2 cut(s)	93, 180
RsaNI	GTAC	2 cut(s)	92, 179
RseI	CAYNNNNRTG	1 cut(s)	87
SapI	GCTCTTC	1 cut(s)	233
Sau3AI	GATC	2 cut(s)	194, 274
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	7 cut(s)	58, 76, 115, 173, 184, 274, 292
SfaNI	GCATC	1 cut(s)	213
SmiMI	CAYNNNNRTG	1 cut(s)	87
Sse9I	AATT	4 cut(s)	23, 31, 98, 129
SsiI	CCGC	2 cut(s)	250, 278
SspMI	CTAG	1 cut(s)	287
StyI	CCWWGG	1 cut(s)	187
TaiI	ACGT	2 cut(s)	115, 274
TaqI	TCGA	2 cut(s)	52, 138
TasI	AATT	4 cut(s)	23, 31, 98, 129
TfiI	GAWTC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	37
VneI	GTGCAC	1 cut(s)	75
XapI	RAATTY	1 cut(s)	23
XceI	RCATGY	1 cut(s)	126
XcmI	CCANNNNNNNNNTGG	1 cut(s)	194
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.