Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001714

Physical Location & Seq

Genomic Coordinates Reverse (-)

54232069 .. 54232245

Gene Structure 177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0396100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGTTCCCAGGGAAGCCAACTACGTTGCTGATGCTGTTACAAATATGGGTCATAGATCATCTACTCCTATCACTTGGTCAAAAAAGTTGCCGTTCTCAGCTTTGTCTGCTTTTAATTTTGATCAATTTAGTTCTGGTTGTAATAGGGGCTTTAAGTTGTAATTTATTTTCCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006422 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045202 GO:0046483 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0098542 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2 tRNA_anti-codon

Protein Analysis

58

Amino Acids

6.39

Weight (kDa)

8.66

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26870 AT4G31180 AT4G31180
fragaria_vesca	FvH4_2g15870 FvH4_2g15910 FvH4_2g30550
malus_domestica	MD08G1134400.v1.1 MD12G1153800.v1.1 MD14G1143300.v1.1 MD15G1113400.v1.1
prunus_persica	Prupe.1G463800_v2.0.a1 Prupe.4G141600_v2.0.a1 Prupe.8G055000_v2.0.a1
pyrus_communis	pycom08g11340 pycom15g10170 pycom16g11710
rosa_chinensis	RchiOBHm_Chr5g0032141 RchiOBHm_Chr5g0032161 RchiOBHm_Chr6g0278871 RchiOBHm_Chr6g0312531
rosa_laevigata	RLG00000010321 RLG00000033368
rosa_multiflora	Rmu_co8427103.1_g000001 Rmu_sc0003031.1_g000023 Rmu_sc0005375.1_g000002 Rmu_sc0005375.1_g000011 Rmu_sc0008363.1_g000011 Rmu_sc0043080.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048240 Rroxscaffold_1G00048270 Rroxscaffold_7G00156770
rosa_rugosa	Rorug06G0119800 Rorug06G0120000 Rorug06G0123400 Rorug06G0396100 Rorug06G0396200
rosa_samantha	Rh5DG228900 Rh6AG228300 Rh6AG513500 Rh6BG233900 Rh6BG234000 Rh6BG524200 Rh6BG526500 Rh6CG236300 Rh6CG531400 Rh6DG515600
rosa_wichuraiana	Rw6G020030 Rw6G044650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AjnI	CCWGG	1 cut(s)	7
AluBI	AGCT	1 cut(s)	100
AluI	AGCT	1 cut(s)	100
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	9
BclI	TGATCA	1 cut(s)	120
Bme1390I	CCNGG	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	9
BmsI	GCATC	1 cut(s)	21
BsaJI	CCNNGG	2 cut(s)	7, 8
BseBI	CCWGG	1 cut(s)	9
BseDI	CCNNGG	2 cut(s)	7, 8
BseMII	CTCAG	1 cut(s)	110
Bsp143I	GATC	2 cut(s)	55, 120
BspCNI	CTCAG	1 cut(s)	109
BssECI	CCNNGG	2 cut(s)	7, 8
BssMI	GATC	2 cut(s)	55, 120
Bst2UI	CCWGG	1 cut(s)	9
BstDEI	CTNAG	1 cut(s)	96
BstKTI	GATC	2 cut(s)	58, 123
BstMBI	GATC	2 cut(s)	55, 120
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstNI	CCWGG	1 cut(s)	9
BstSCI	CCNGG	1 cut(s)	7
CviJI	RGCY	3 cut(s)	16, 100, 149
CviKI_1	RGCY	3 cut(s)	16, 100, 149
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	2 cut(s)	57, 122
DpnII	GATC	2 cut(s)	55, 120
EcoRII	CCWGG	1 cut(s)	7
FaiI	YATR	2 cut(s)	46, 53
FbaI	TGATCA	1 cut(s)	120
HpyCH4IV	ACGT	1 cut(s)	23
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	1 cut(s)	96
HpySE526I	ACGT	1 cut(s)	23
Ksp22I	TGATCA	1 cut(s)	120
Kzo9I	GATC	2 cut(s)	55, 120
LpnPI	CCDG	2 cut(s)	21, 119
LweI	GCATC	1 cut(s)	21
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	36
MalI	GATC	2 cut(s)	57, 122
MboI	GATC	2 cut(s)	55, 120
MluCI	AATT	3 cut(s)	114, 124, 160
MseI	TTAA	2 cut(s)	113, 152
MspR9I	CCNGG	1 cut(s)	9
MvaI	CCWGG	1 cut(s)	9
MwoI	GCNNNNNNNGC	1 cut(s)	106
NdeII	GATC	2 cut(s)	55, 120
PasI	CCCWGGG	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	7
SaqAI	TTAA	2 cut(s)	113, 152
Sau3AI	GATC	2 cut(s)	55, 120
ScrFI	CCNGG	1 cut(s)	9
SetI	ASST	2 cut(s)	26, 102
SfaNI	GCATC	1 cut(s)	21
SgeI	CNNG	4 cut(s)	20, 21, 86, 146
Sse9I	AATT	3 cut(s)	114, 124, 160
StyD4I	CCNGG	1 cut(s)	7
TaiI	ACGT	1 cut(s)	26
TasI	AATT	3 cut(s)	114, 124, 160
Tru1I	TTAA	2 cut(s)	113, 152
Tru9I	TTAA	2 cut(s)	113, 152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.