Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001714

Physical Location & Seq

Genomic Coordinates Forward (+)

43983301 .. 43983747

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG234000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCTGAAGGATGCCGGTGTGGAAGTTGATCCTATGGGGGACTTAGATACTAAAAAAGAGAGGAAGTTGGGCCAAATAGTTTTGGAGAAATATGGCACTGAGTTCTACATACTTCACCGCTATCCGTTGGCTGTGAGGCCTTTCTATACCATGCCTTGCGACGATAATCCTGAATACAGCAATTCGTTTGACGTCTTCATTCGAGGTGAGGAGATTATATCAGGTGCACAACGTATCCATGTACCAGAATTATTGGTCGAACGTGCTTCAGCACGTGGAATTGAAGTAGAGACAATATCAACATATATTGATTCCTTCAGATATGGTTCACCTCCCCATGGTGGATTTGGAGTAGGGCTGGAGCGTGTTGTGATGCTCTTCTGTGGTTTGAATAACATCCGCAAAACATCTTTATTCCCGCGTGATCCAGACCGGCTAGCGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006422 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045202 GO:0046483 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0098542 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2 tRNA_anti-codon

Protein Analysis

148

Amino Acids

16.77

Weight (kDa)

5.4

Isoelectric Point (pI)

34.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2	PF00152	14 - 142	1.8e-34	tRNA synthetases class II (D, K and N)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26870 AT4G31180 AT4G31180
fragaria_vesca	FvH4_2g15870 FvH4_2g15910 FvH4_2g30550
malus_domestica	MD08G1134400.v1.1 MD12G1153800.v1.1 MD14G1143300.v1.1 MD15G1113400.v1.1
prunus_persica	Prupe.1G463800_v2.0.a1 Prupe.4G141600_v2.0.a1 Prupe.8G055000_v2.0.a1
pyrus_communis	pycom08g11340 pycom15g10170 pycom16g11710
rosa_chinensis	RchiOBHm_Chr5g0032141 RchiOBHm_Chr5g0032161 RchiOBHm_Chr6g0278871 RchiOBHm_Chr6g0312531
rosa_laevigata	RLG00000010321 RLG00000033368
rosa_multiflora	Rmu_co8427103.1_g000001 Rmu_sc0003031.1_g000023 Rmu_sc0005375.1_g000002 Rmu_sc0005375.1_g000011 Rmu_sc0008363.1_g000011 Rmu_sc0043080.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048240 Rroxscaffold_1G00048270 Rroxscaffold_7G00156770
rosa_rugosa	Rorug06G0119800 Rorug06G0120000 Rorug06G0123400 Rorug06G0396100 Rorug06G0396200
rosa_samantha	Rh5DG228900 Rh6AG228300 Rh6AG513500 Rh6BG233900 Rh6BG234000 Rh6BG524200 Rh6BG526500 Rh6CG236300 Rh6CG531400 Rh6DG515600
rosa_wichuraiana	Rw6G020030 Rw6G044650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	195
AccII	CGCG	1 cut(s)	421
AciI	CCGC	3 cut(s)	118, 400, 419
AclWI	GGATC	2 cut(s)	23, 419
AcuI	CTGAAG	3 cut(s)	26, 252, 301
AcvI	CACGTG	1 cut(s)	275
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	2 cut(s)	338, 341
AgsI	TTSAA	2 cut(s)	284, 391
Alw21I	GWGCWC	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	284
Alw44I	GTGCAC	1 cut(s)	225
AlwI	GGATC	2 cut(s)	23, 419
AoxI	GGCC	2 cut(s)	70, 137
ApaLI	GTGCAC	1 cut(s)	225
AspLEI	GCGC	1 cut(s)	442
AspS9I	GGNCC	1 cut(s)	70
AsuHPI	GGTGA	3 cut(s)	107, 218, 321
AsuNHI	GCTAGC	1 cut(s)	436
BaeGI	GKGCMC	1 cut(s)	229
BbrPI	CACGTG	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	187
Bbv12I	GWGCWC	1 cut(s)	229
BciVI	GTATCC	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	1 cut(s)	437
BfoI	RGCGCY	1 cut(s)	443
BfuI	GTATCC	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	70
BmsI	GCATC	1 cut(s)	363
BmtI	GCTAGC	1 cut(s)	440
BpiI	GAAGAC	1 cut(s)	187
BpmI	CTGGAG	1 cut(s)	380
BsaAI	YACGTR	1 cut(s)	275
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	2 cut(s)	338, 341
Bse118I	RCCGGY	2 cut(s)	14, 432
BseDI	CCNNGG	1 cut(s)	337
BseGI	GGATG	2 cut(s)	16, 396
BseLI	CCNNNNNNNGG	2 cut(s)	338, 341
BseMII	CTCAG	1 cut(s)	90
BseRI	GAGGAG	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	229
Bsh1236I	CGCG	1 cut(s)	421
BshFI	GGCC	2 cut(s)	72, 139
BsiHKAI	GWGCWC	1 cut(s)	229
BsiSI	CCGG	2 cut(s)	15, 433
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	2 cut(s)	338, 341
BsmAI	GTCTC	1 cut(s)	284
BsmFI	GGGAC	1 cut(s)	53
BsnI	GGCC	2 cut(s)	72, 139
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	2 cut(s)	28, 424
Bsp19I	CCATGG	1 cut(s)	337
BspACI	CCGC	3 cut(s)	118, 400, 419
BspANI	GGCC	2 cut(s)	72, 139
BspCNI	CTCAG	1 cut(s)	91
BspFNI	CGCG	1 cut(s)	421
BspOI	GCTAGC	1 cut(s)	440
BspPI	GGATC	2 cut(s)	23, 419
BspQI	GCTCTTC	1 cut(s)	383
BsrFI	RCCGGY	2 cut(s)	14, 432
BssAI	RCCGGY	2 cut(s)	14, 432
BssECI	CCNNGG	1 cut(s)	337
BssMI	GATC	2 cut(s)	28, 424
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	337
Bst6I	CTCTTC	1 cut(s)	383
BstACI	GRCGYC	1 cut(s)	192
BstBAI	YACGTR	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	2 cut(s)	43, 99
BstDSI	CCRYGG	1 cut(s)	337
BstF5I	GGATG	2 cut(s)	16, 396
BstFNI	CGCG	1 cut(s)	421
BstH2I	RGCGCY	1 cut(s)	443
BstHHI	GCGC	1 cut(s)	442
BstKTI	GATC	2 cut(s)	31, 427
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	2 cut(s)	28, 424
BstSLI	GKGCMC	1 cut(s)	229
BstUI	CGCG	1 cut(s)	421
BstV2I	GAAGAC	1 cut(s)	187
BsuI	GTATCC	1 cut(s)	245
BsuRI	GGCC	2 cut(s)	72, 139
BtgI	CCRYGG	1 cut(s)	337
BtsCI	GGATG	2 cut(s)	16, 396
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	438
CfoI	GCGC	1 cut(s)	442
Cfr10I	RCCGGY	2 cut(s)	14, 432
Cfr13I	GGNCC	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	242
CviAII	CATG	3 cut(s)	151, 239, 338
CviJI	RGCY	5 cut(s)	72, 131, 139, 358, 436
CviKI_1	RGCY	5 cut(s)	72, 131, 139, 358, 436
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	2 cut(s)	43, 99
DpnI	GATC	2 cut(s)	30, 426
DpnII	GATC	2 cut(s)	28, 424
Eam1104I	CTCTTC	1 cut(s)	383
EarI	CTCTTC	1 cut(s)	383
Eco130I	CCWWGG	1 cut(s)	337
Eco147I	AGGCCT	1 cut(s)	139
Eco57I	CTGAAG	3 cut(s)	26, 252, 301
Eco72I	CACGTG	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	337
FaeI	CATG	3 cut(s)	154, 242, 341
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	3 cut(s)	150, 238, 337
FauI	CCCGC	1 cut(s)	426
FokI	GGATG	2 cut(s)	23, 383
FspBI	CTAG	1 cut(s)	437
GlaI	GCGC	1 cut(s)	441
GsuI	CTGGAG	1 cut(s)	380
HaeII	RGCGCY	1 cut(s)	443
HaeIII	GGCC	2 cut(s)	72, 139
HapII	CCGG	2 cut(s)	15, 433
HhaI	GCGC	1 cut(s)	442
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	3 cut(s)	154, 242, 341
Hin6I	GCGC	1 cut(s)	440
HinP1I	GCGC	1 cut(s)	440
HinfI	GANTC	1 cut(s)	311
HpaII	CCGG	2 cut(s)	15, 433
HphI	GGTGA	3 cut(s)	107, 218, 321
Hpy166II	GTNNAC	2 cut(s)	227, 329
Hpy188I	TCNGA	1 cut(s)	320
Hpy188III	TCNNGA	2 cut(s)	170, 428
Hpy8I	GTNNAC	2 cut(s)	227, 329
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	325
HpyCH4IV	ACGT	4 cut(s)	192, 232, 262, 274
HpyCH4V	TGCA	1 cut(s)	227
HpyF3I	CTNAG	2 cut(s)	43, 99
HpySE526I	ACGT	4 cut(s)	192, 232, 262, 274
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	3 cut(s)	154, 242, 341
HspAI	GCGC	1 cut(s)	440
Kzo9I	GATC	2 cut(s)	28, 424
LguI	GCTCTTC	1 cut(s)	383
LmnI	GCTCC	1 cut(s)	361
LpnPI	CCDG	6 cut(s)	28, 183, 207, 258, 344, 441
LweI	GCATC	1 cut(s)	363
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	4 cut(s)	192, 232, 262, 274
MalI	GATC	2 cut(s)	30, 426
MboI	GATC	2 cut(s)	28, 424
MboII	GAAGA	2 cut(s)	187, 370
MhlI	GDGCHC	1 cut(s)	229
MluCI	AATT	3 cut(s)	181, 248, 279
MnlI	CCTC	5 cut(s)	54, 129, 197, 202, 342
MspI	CCGG	2 cut(s)	15, 433
MvnI	CGCG	1 cut(s)	421
NcoI	CCATGG	1 cut(s)	337
NdeII	GATC	2 cut(s)	28, 424
NheI	GCTAGC	1 cut(s)	436
NlaIII	CATG	3 cut(s)	154, 242, 341
PceI	AGGCCT	1 cut(s)	139
PciSI	GCTCTTC	1 cut(s)	383
PfeI	GAWTC	1 cut(s)	311
PmaCI	CACGTG	1 cut(s)	275
PmlI	CACGTG	1 cut(s)	275
Ppu21I	YACGTR	1 cut(s)	275
PspCI	CACGTG	1 cut(s)	275
PspPI	GGNCC	1 cut(s)	70
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
SapI	GCTCTTC	1 cut(s)	383
Sau3AI	GATC	2 cut(s)	28, 424
Sau96I	GGNCC	1 cut(s)	70
SduI	GDGCHC	1 cut(s)	229
SetI	ASST	7 cut(s)	195, 208, 226, 235, 265, 277, 334
SfaNI	GCATC	1 cut(s)	363
Sse9I	AATT	3 cut(s)	181, 248, 279
SseBI	AGGCCT	1 cut(s)	139
SsiI	CCGC	3 cut(s)	118, 400, 419
SspMI	CTAG	1 cut(s)	437
StuI	AGGCCT	1 cut(s)	139
StyI	CCWWGG	1 cut(s)	337
TaiI	ACGT	4 cut(s)	195, 235, 265, 277
TaqI	TCGA	2 cut(s)	202, 258
TasI	AATT	3 cut(s)	181, 248, 279
TfiI	GAWTC	1 cut(s)	311
TscAI	CASTG	1 cut(s)	103
TspDTI	ATGAA	1 cut(s)	187
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	1 cut(s)	103
VneI	GTGCAC	1 cut(s)	225
XcmI	CCANNNNNNNNNTGG	1 cut(s)	344
XspI	CTAG	1 cut(s)	437
ZraI	GACGTC	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.