Rroxscaffold_1G00048270

aspartate--tRNA ligase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
68261017 .. 68261274
258 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00048270.1

Sequence Viewer

Length: 258 bp
ATGCGTCGTGACGGTTCAGCCGGAGATTGTGAGTCGTCAGATGGTGAAGTACGTGGTGGCGTTGAGCCTTGGGAATCGACTATTGTCATTCAAGGGATTGTGTCTGTTCCTGTTATGGCAATTAAAGGCGCTTCACAACAGGTGGAGGTGCAATTTAGAAAGTTGTATTGTATAAGGCTGCTGTTTTGCCTTTTAACATTGAGAATGCTGCTCGAAGTGAAAAACCTAAGGAGGATGGAGAACAACTGGTTCGCGTAA

Protein Analysis

85

Amino Acids

9.65

Weight (kDa)

7.71

Isoelectric Point (pI)

37.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 254
AfaI GTAC 1 cut(s) 51
AgsI TTSAA 1 cut(s) 92
ApeKI GCWGC 2 cut(s) 178, 208
AspLEI GCGC 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 56
AxyI CCTNAGG 1 cut(s) 227
BbvI GCAGC 2 cut(s) 165, 195
BccI CCATC 2 cut(s) 35, 229
BfoI RGCGCY 1 cut(s) 132
BisI GCNGC 2 cut(s) 179, 209
BlsI GCNGC 2 cut(s) 180, 210
BoxI GACNNNNGTC 1 cut(s) 83
BsaAI YACGTR 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 251
Bse21I CCTNAGG 1 cut(s) 227
BseDI CCNNGG 1 cut(s) 68
BseGI GGATG 1 cut(s) 240
BseNI ACTGG 1 cut(s) 251
BseXI GCAGC 2 cut(s) 165, 195
Bsh1236I CGCG 1 cut(s) 254
BsiSI CCGG 1 cut(s) 21
BsmI GAATGC 1 cut(s) 210
BspFNI CGCG 1 cut(s) 254
BsrI ACTGG 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 14
BstBAI YACGTR 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 227
BstF5I GGATG 1 cut(s) 240
BstFNI CGCG 1 cut(s) 254
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 1 cut(s) 131
BstPAI GACNNNNGTC 1 cut(s) 83
BstUI CGCG 1 cut(s) 254
BstV1I GCAGC 2 cut(s) 165, 195
Bsu36I CCTNAGG 1 cut(s) 227
BtsCI GGATG 1 cut(s) 240
CfoI GCGC 1 cut(s) 131
Csp6I GTAC 1 cut(s) 50
CviJI RGCY 3 cut(s) 20, 67, 178
CviKI_1 RGCY 3 cut(s) 20, 67, 178
CviQI GTAC 1 cut(s) 50
DdeI CTNAG 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 68
Eco81I CCTNAGG 1 cut(s) 227
EcoT14I CCWWGG 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 68
FaiI YATR 2 cut(s) 116, 173
Fnu4HI GCNGC 2 cut(s) 179, 209
FokI GGATG 1 cut(s) 247
Fsp4HI GCNGC 2 cut(s) 179, 209
GlaI GCGC 1 cut(s) 130
GluI GCNGC 2 cut(s) 179, 209
HaeII RGCGCY 1 cut(s) 132
HapII CCGG 1 cut(s) 21
HhaI GCGC 1 cut(s) 131
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HinfI GANTC 2 cut(s) 32, 74
HpaII CCGG 1 cut(s) 21
HphI GGTGA 1 cut(s) 56
Hpy188I TCNGA 1 cut(s) 40
Hpy188III TCNNGA 1 cut(s) 8
Hpy99I CGWCG 1 cut(s) 9
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 1 cut(s) 151
HpyF3I CTNAG 1 cut(s) 227
HpySE526I ACGT 1 cut(s) 52
HspAI GCGC 1 cut(s) 129
LpnPI CCDG 4 cut(s) 34, 123, 125, 232
Lsp1109I GCAGC 2 cut(s) 165, 195
MaeII ACGT 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 8
MluCI AATT 2 cut(s) 120, 152
MlyI GAGTC 1 cut(s) 41
MnlI CCTC 2 cut(s) 139, 225
MseI TTAA 2 cut(s) 123, 194
MspI CCGG 1 cut(s) 21
Mva1269I GAATGC 1 cut(s) 210
MvnI CGCG 1 cut(s) 254
NmuCI GTSAC 1 cut(s) 8
PctI GAATGC 1 cut(s) 210
PfeI GAWTC 1 cut(s) 74
PkrI GCNGC 2 cut(s) 180, 210
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
Ppu21I YACGTR 1 cut(s) 53
PshAI GACNNNNGTC 1 cut(s) 83
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
SaqAI TTAA 2 cut(s) 123, 194
SatI GCNGC 2 cut(s) 179, 209
SchI GAGTC 1 cut(s) 41
SetI ASST 4 cut(s) 55, 144, 150, 228
SgeI CNNG 8 cut(s) 20, 33, 65, 81, 104, 122, 152, 224
Sse9I AATT 2 cut(s) 120, 152
StyI CCWWGG 1 cut(s) 68
TaaI ACNGT 1 cut(s) 14
TaiI ACGT 1 cut(s) 55
TaqI TCGA 2 cut(s) 77, 213
TasI AATT 2 cut(s) 120, 152
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 2 cut(s) 123, 194
Tru9I TTAA 2 cut(s) 123, 194
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 2 cut(s) 178, 208
Tsp45I GTSAC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.