Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001714

Physical Location & Seq

Genomic Coordinates Forward (+)

68208117 .. 68209666

Gene Structure 1550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00048240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGTCAGAACCTCAGCCAGCCACCCAGCCCAACCACGAGCCAGAGAACGAGGAATCAGCCTTTCTGAGCAAAAAGGAGGCGAAGAAAGAAGAGGTTAAGCTCGAGAAGCTCCGTCGCAACCAAGAGCAAGAAACTGCACCGCCGCGGCTCAAGCTCAGTCTGCCGAGCCAGAGGACCAGCTTGCCACTAACTACGGTGACGTGCCGCTCATTCAACATTGAAGGACCAGAAGCCGGAGATTGTGAGCCGTCAGATGGTGAAGTACGTGGTGGCGTTGAGCCCTGGGAATCGACTATTGTCATTGAAGGGATTGTGTCTGTTCCTGTTATGGCAATTAAAGGCGCTGCACAGCAGGTGGAGGTGCAATTTAGAAAGTTGTACAGTATAAGGCTGCTGTTTTGCCTTTTGACATTGAGGATGCTGCTCGAAGTGAAAAACCTACTGAGGATCGATGGACAACAACTGGTTGGCGTAAAACAGGATAAACGCTTGAACTACCGAGTACTTGACTTGCGAACACTGGCAAACCTGGGGATTTCCGAATCCAGAGTCAAGTTAGCTGAGGACTCTTACACCCAAAGGCATCTACGTCAGTTCACTAGTCTCGATATTGAGATGGAAATTGTGTGGAGCTATTTTGAGGTTATGGATATTGTTAGCAGGTTGTTGGTCACTATGTTTGGCTATTTGAACAAAAATTGTGAAAAGGAACTTGAAGCTGTAAGGAGGCAGTATCCATCCGAACCAAGAAATAACTTGCGTGAGACTCCACGTCTCACTTTTTGCCGAAGGTATGGTGTACCTCCCCATGGTGGATTTGGAGCAGGGCTGGAGCGTGTTGTGATGCTCTTCTGTGGTTTGAATTACATCCCAAAACATCCTTATTCTCGCGTGATCCGCACCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006422 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045202 GO:0046483 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0098542 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2 tRNA_anti-codon

Protein Analysis

302

Amino Acids

34.59

Weight (kDa)

8.67

Isoelectric Point (pI)

52.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2	PF00152	263 - 290	8.1e-07	tRNA synthetases class II (D, K and N)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26870 AT4G31180 AT4G31180
fragaria_vesca	FvH4_2g15870 FvH4_2g15910 FvH4_2g30550
malus_domestica	MD08G1134400.v1.1 MD12G1153800.v1.1 MD14G1143300.v1.1 MD15G1113400.v1.1
prunus_persica	Prupe.1G463800_v2.0.a1 Prupe.4G141600_v2.0.a1 Prupe.8G055000_v2.0.a1
pyrus_communis	pycom08g11340 pycom15g10170 pycom16g11710
rosa_chinensis	RchiOBHm_Chr5g0032141 RchiOBHm_Chr5g0032161 RchiOBHm_Chr6g0278871 RchiOBHm_Chr6g0312531
rosa_laevigata	RLG00000010321 RLG00000033368
rosa_multiflora	Rmu_co8427103.1_g000001 Rmu_sc0003031.1_g000023 Rmu_sc0005375.1_g000002 Rmu_sc0005375.1_g000011 Rmu_sc0008363.1_g000011 Rmu_sc0043080.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048240 Rroxscaffold_1G00048270 Rroxscaffold_7G00156770
rosa_rugosa	Rorug06G0119800 Rorug06G0120000 Rorug06G0123400 Rorug06G0396100 Rorug06G0396200
rosa_samantha	Rh5DG228900 Rh6AG228300 Rh6AG513500 Rh6BG233900 Rh6BG234000 Rh6BG524200 Rh6BG526500 Rh6CG236300 Rh6CG531400 Rh6DG515600
rosa_wichuraiana	Rw6G020030 Rw6G044650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	343
Acc36I	ACCTGC	2 cut(s)	343, 651
AccBSI	CCGCTC	1 cut(s)	207
AccII	CGCG	2 cut(s)	145, 891
AciI	CCGC	5 cut(s)	140, 143, 145, 205, 898
AclWI	GGATC	2 cut(s)	455, 889
AfaI	GTAC	4 cut(s)	264, 380, 504, 801
AfiI	CCNNNNNNNGG	4 cut(s)	233, 254, 809, 812
AgsI	TTSAA	7 cut(s)	214, 221, 305, 493, 691, 716, 862
AhdI	GACNNNNNGTC	1 cut(s)	771
AhlI	ACTAGT	1 cut(s)	599
AjiI	CACGTC	2 cut(s)	201, 773
AjnI	CCWGG	2 cut(s)	281, 528
AluBI	AGCT	7 cut(s)	100, 109, 154, 180, 560, 633, 719
AluI	AGCT	7 cut(s)	100, 109, 154, 180, 560, 633, 719
Alw26I	GTCTC	3 cut(s)	608, 758, 779
AlwI	GGATC	2 cut(s)	455, 889
Ama87I	CYCGRG	1 cut(s)	101
ApeKI	GCWGC	3 cut(s)	344, 391, 421
ArsI	GACNNNNNNTTYG	2 cut(s)	534, 566
AspLEI	GCGC	1 cut(s)	344
AspS9I	GGNCC	2 cut(s)	174, 224
AsuHPI	GGTGA	2 cut(s)	208, 269
AvaI	CYCGRG	1 cut(s)	101
AvaII	GGWCC	2 cut(s)	174, 224
BanII	GRGCYC	1 cut(s)	282
BauI	CACGAG	1 cut(s)	35
BbvCI	CCTCAGC	2 cut(s)	12, 561
BbvI	GCAGC	3 cut(s)	331, 378, 408
BccI	CCATC	4 cut(s)	248, 446, 610, 745
BceAI	ACGGC	1 cut(s)	232
BciT130I	CCWGG	2 cut(s)	283, 530
BciVI	GTATCC	1 cut(s)	744
BcoDI	GTCTC	3 cut(s)	608, 758, 779
BcuI	ACTAGT	1 cut(s)	599
BfaI	CTAG	2 cut(s)	600, 907
BfoI	RGCGCY	1 cut(s)	345
BfuAI	ACCTGC	2 cut(s)	343, 651
BfuI	GTATCC	1 cut(s)	744
BisI	GCNGC	6 cut(s)	143, 146, 205, 345, 392, 422
BlsI	GCNGC	6 cut(s)	144, 147, 206, 346, 393, 423
BmcAI	AGTACT	1 cut(s)	504
Bme1390I	CCNGG	2 cut(s)	283, 530
Bme18I	GGWCC	2 cut(s)	174, 224
BmeRI	GACNNNNNGTC	1 cut(s)	771
BmeT110I	CYCGRG	1 cut(s)	101
BmgBI	CACGTC	2 cut(s)	201, 773
BmgT120I	GGNCC	2 cut(s)	174, 224
BmrFI	CCNGG	2 cut(s)	283, 530
BmsI	GCATC	3 cut(s)	408, 592, 834
BoxI	GACNNNNGTC	1 cut(s)	296
BpmI	CTGGAG	1 cut(s)	851
Bpu10I	CCTNAGC	2 cut(s)	12, 561
BpuEI	CTTGAG	1 cut(s)	134
Bsa29I	ATCGAT	1 cut(s)	450
BsaAI	YACGTR	1 cut(s)	266
BsaJI	CCNNGG	5 cut(s)	143, 281, 282, 529, 808
Bsc4I	CCNNNNNNNGG	4 cut(s)	233, 254, 809, 812
Bse118I	RCCGGY	1 cut(s)	902
Bse1I	ACTGG	2 cut(s)	468, 525
BseBI	CCWGG	2 cut(s)	283, 530
BseCI	ATCGAT	1 cut(s)	450
BseDI	CCNNGG	5 cut(s)	143, 281, 282, 529, 808
BseGI	GGATG	4 cut(s)	423, 737, 867, 877
BseLI	CCNNNNNNNGG	4 cut(s)	233, 254, 809, 812
BseMII	CTCAG	5 cut(s)	26, 56, 169, 434, 552
BseNI	ACTGG	2 cut(s)	468, 525
BseXI	GCAGC	3 cut(s)	331, 378, 408
BseYI	CCCAGC	1 cut(s)	24
BsgI	GTGCAG	2 cut(s)	120, 330
Bsh1236I	CGCG	2 cut(s)	145, 891
BshVI	ATCGAT	1 cut(s)	450
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	2 cut(s)	234, 903
BslI	CCNNNNNNNGG	4 cut(s)	233, 254, 809, 812
BsmAI	GTCTC	3 cut(s)	608, 758, 779
BsmBI	CGTCTC	1 cut(s)	779
BsoBI	CYCGRG	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp1407I	TGTACA	1 cut(s)	378
Bsp143I	GATC	2 cut(s)	447, 894
Bsp19I	CCATGG	1 cut(s)	808
BspACI	CCGC	5 cut(s)	140, 143, 145, 205, 898
BspCNI	CTCAG	5 cut(s)	25, 57, 168, 435, 553
BspDI	ATCGAT	1 cut(s)	450
BspFNI	CGCG	2 cut(s)	145, 891
BspMI	ACCTGC	2 cut(s)	343, 651
BspPI	GGATC	2 cut(s)	455, 889
BspQI	GCTCTTC	1 cut(s)	854
BsrBI	CCGCTC	1 cut(s)	207
BsrFI	RCCGGY	1 cut(s)	902
BsrGI	TGTACA	1 cut(s)	378
BsrI	ACTGG	2 cut(s)	468, 525
BssAI	RCCGGY	1 cut(s)	902
BssECI	CCNNGG	5 cut(s)	143, 281, 282, 529, 808
BssMI	GATC	2 cut(s)	447, 894
BssSI	CACGAG	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	808
Bst2BI	CACGAG	1 cut(s)	35
Bst2UI	CCWGG	2 cut(s)	283, 530
Bst4CI	ACNGT	2 cut(s)	196, 383
Bst6I	CTCTTC	2 cut(s)	84, 854
BstAUI	TGTACA	1 cut(s)	378
BstBAI	YACGTR	1 cut(s)	266
BstC8I	GCNNGC	2 cut(s)	18, 182
BstDEI	CTNAG	5 cut(s)	12, 65, 155, 443, 561
BstDSI	CCRYGG	2 cut(s)	143, 808
BstF5I	GGATG	4 cut(s)	423, 737, 867, 877
BstFNI	CGCG	2 cut(s)	145, 891
BstH2I	RGCGCY	1 cut(s)	345
BstHHI	GCGC	1 cut(s)	344
BstKTI	GATC	2 cut(s)	450, 897
BstMAI	GTCTC	3 cut(s)	608, 758, 779
BstMBI	GATC	2 cut(s)	447, 894
BstMWI	GCNNNNNNNGC	4 cut(s)	106, 151, 160, 897
BstNI	CCWGG	2 cut(s)	283, 530
BstPAI	GACNNNNGTC	1 cut(s)	296
BstSCI	CCNGG	2 cut(s)	281, 528
BstUI	CGCG	2 cut(s)	145, 891
BstV1I	GCAGC	3 cut(s)	331, 378, 408
Bsu15I	ATCGAT	1 cut(s)	450
BsuI	GTATCC	1 cut(s)	744
BsuTUI	ATCGAT	1 cut(s)	450
BtgI	CCRYGG	2 cut(s)	143, 808
BtrI	CACGTC	2 cut(s)	201, 773
BtsCI	GGATG	4 cut(s)	423, 737, 867, 877
BtsIMutI	CAGTG	1 cut(s)	518
BveI	ACCTGC	2 cut(s)	343, 651
Cac8I	GCNNGC	2 cut(s)	18, 182
CfoI	GCGC	1 cut(s)	344
Cfr10I	RCCGGY	1 cut(s)	902
Cfr13I	GGNCC	2 cut(s)	174, 224
Cfr42I	CCGCGG	1 cut(s)	146
ClaI	ATCGAT	1 cut(s)	450
Csp6I	GTAC	4 cut(s)	263, 379, 503, 800
CviAII	CATG	1 cut(s)	809
CviQI	GTAC	4 cut(s)	263, 379, 503, 800
DdeI	CTNAG	5 cut(s)	12, 65, 155, 443, 561
DpnI	GATC	2 cut(s)	449, 896
DpnII	GATC	2 cut(s)	447, 894
DriI	GACNNNNNGTC	1 cut(s)	771
Eam1104I	CTCTTC	2 cut(s)	84, 854
Eam1105I	GACNNNNNGTC	1 cut(s)	771
EarI	CTCTTC	2 cut(s)	84, 854
Eco130I	CCWWGG	1 cut(s)	808
Eco24I	GRGCYC	1 cut(s)	282
Eco47I	GGWCC	2 cut(s)	174, 224
Eco88I	CYCGRG	1 cut(s)	101
EcoRII	CCWGG	2 cut(s)	281, 528
EcoT14I	CCWWGG	1 cut(s)	808
EcoT38I	GRGCYC	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	808
Esp3I	CGTCTC	1 cut(s)	779
FaeI	CATG	1 cut(s)	812
FaiI	YATR	6 cut(s)	329, 386, 647, 677, 795, 810
FatI	CATG	1 cut(s)	808
Fnu4HI	GCNGC	6 cut(s)	143, 146, 205, 345, 392, 422
FokI	GGATG	4 cut(s)	430, 724, 854, 864
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	6 cut(s)	143, 146, 205, 345, 392, 422
FspBI	CTAG	2 cut(s)	600, 907
GlaI	GCGC	1 cut(s)	343
GluI	GCNGC	6 cut(s)	143, 146, 205, 345, 392, 422
GsaI	CCCAGC	1 cut(s)	28
GsuI	CTGGAG	1 cut(s)	851
HaeII	RGCGCY	1 cut(s)	345
HapII	CCGG	2 cut(s)	234, 903
HhaI	GCGC	1 cut(s)	344
Hin1II	CATG	1 cut(s)	812
Hin6I	GCGC	1 cut(s)	342
HinP1I	GCGC	1 cut(s)	342
HinfI	GANTC	6 cut(s)	53, 287, 542, 549, 566, 766
HpaII	CCGG	2 cut(s)	234, 903
HphI	GGTGA	2 cut(s)	208, 269
Hpy166II	GTNNAC	2 cut(s)	597, 800
Hpy188I	TCNGA	5 cut(s)	7, 66, 253, 541, 742
Hpy188III	TCNNGA	3 cut(s)	103, 546, 605
Hpy8I	GTNNAC	2 cut(s)	597, 800
Hpy99I	CGWCG	1 cut(s)	117
HpyAV	CCTTC	3 cut(s)	215, 299, 783
HpyCH4III	ACNGT	2 cut(s)	196, 383
HpyCH4IV	ACGT	4 cut(s)	200, 265, 589, 772
HpyCH4V	TGCA	3 cut(s)	137, 347, 364
HpyF10VI	GCNNNNNNNGC	4 cut(s)	106, 151, 160, 897
HpyF3I	CTNAG	5 cut(s)	12, 65, 155, 443, 561
HpySE526I	ACGT	4 cut(s)	200, 265, 589, 772
Hsp92II	CATG	1 cut(s)	812
HspAI	GCGC	1 cut(s)	342
KspI	CCGCGG	1 cut(s)	146
Kzo9I	GATC	2 cut(s)	447, 894
LguI	GCTCTTC	1 cut(s)	854
LmnI	GCTCC	4 cut(s)	114, 630, 821, 832
Lsp1109I	GCAGC	3 cut(s)	331, 378, 408
LweI	GCATC	3 cut(s)	408, 592, 834
MaeI	CTAG	2 cut(s)	600, 907
MaeII	ACGT	4 cut(s)	200, 265, 589, 772
MaeIII	GTNAC	2 cut(s)	196, 670
MalI	GATC	2 cut(s)	449, 896
MbiI	CCGCTC	1 cut(s)	207
MboI	GATC	2 cut(s)	447, 894
MboII	GAAGA	3 cut(s)	94, 101, 841
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	5 cut(s)	333, 365, 621, 697, 862
MlyI	GAGTC	3 cut(s)	558, 560, 760
MseI	TTAA	2 cut(s)	96, 336
MspA1I	CMGCKG	1 cut(s)	145
MspI	CCGG	2 cut(s)	234, 903
MspR9I	CCNGG	2 cut(s)	283, 530
MvaI	CCWGG	2 cut(s)	283, 530
MvnI	CGCG	2 cut(s)	145, 891
MwoI	GCNNNNNNNGC	4 cut(s)	106, 151, 160, 897
NcoI	CCATGG	1 cut(s)	808
NdeII	GATC	2 cut(s)	447, 894
NlaIII	CATG	1 cut(s)	812
NmeAIII	GCCGAG	1 cut(s)	189
NmuCI	GTSAC	2 cut(s)	196, 670
PaeR7I	CTCGAG	1 cut(s)	101
PaqCI	CACCTGC	1 cut(s)	343
PasI	CCCWGGG	1 cut(s)	282
PciSI	GCTCTTC	1 cut(s)	854
PfeI	GAWTC	3 cut(s)	53, 287, 542
PkrI	GCNGC	6 cut(s)	144, 147, 206, 346, 393, 423
PleI	GAGTC	3 cut(s)	557, 560, 760
PpsI	GAGTC	3 cut(s)	557, 560, 760
Ppu21I	YACGTR	1 cut(s)	266
PshAI	GACNNNNGTC	1 cut(s)	296
Psp6I	CCWGG	2 cut(s)	281, 528
PspFI	CCCAGC	1 cut(s)	24
PspGI	CCWGG	2 cut(s)	281, 528
PspPI	GGNCC	2 cut(s)	174, 224
RsaI	GTAC	4 cut(s)	264, 380, 504, 801
RsaNI	GTAC	4 cut(s)	263, 379, 503, 800
SacII	CCGCGG	1 cut(s)	146
SapI	GCTCTTC	1 cut(s)	854
SaqAI	TTAA	2 cut(s)	96, 336
SatI	GCNGC	6 cut(s)	143, 146, 205, 345, 392, 422
Sau3AI	GATC	2 cut(s)	447, 894
Sau96I	GGNCC	2 cut(s)	174, 224
ScaI	AGTACT	1 cut(s)	504
SchI	GAGTC	3 cut(s)	558, 560, 760
ScrFI	CCNGG	2 cut(s)	283, 530
SduI	GDGCHC	1 cut(s)	282
SfaNI	GCATC	3 cut(s)	408, 592, 834
Sfr274I	CTCGAG	1 cut(s)	101
Sfr303I	CCGCGG	1 cut(s)	146
SgrBI	CCGCGG	1 cut(s)	146
SinI	GGWCC	2 cut(s)	174, 224
SlaI	CTCGAG	1 cut(s)	101
SmlI	CTYRAG	2 cut(s)	101, 149
SmoI	CTYRAG	2 cut(s)	101, 149
SpeI	ACTAGT	1 cut(s)	599
Sse9I	AATT	5 cut(s)	333, 365, 621, 697, 862
SsiI	CCGC	5 cut(s)	140, 143, 145, 205, 898
SspMI	CTAG	2 cut(s)	600, 907
StyD4I	CCNGG	2 cut(s)	281, 528
StyI	CCWWGG	1 cut(s)	808
TaaI	ACNGT	2 cut(s)	196, 383
TaiI	ACGT	4 cut(s)	203, 268, 592, 775
TaqI	TCGA	5 cut(s)	102, 290, 426, 450, 606
TasI	AATT	5 cut(s)	333, 365, 621, 697, 862
TatI	WGTACW	2 cut(s)	378, 502
TauI	GCSGC	3 cut(s)	145, 148, 207
TfiI	GAWTC	3 cut(s)	53, 287, 542
Tru1I	TTAA	2 cut(s)	96, 336
Tru9I	TTAA	2 cut(s)	96, 336
TscAI	CASTG	1 cut(s)	525
TseFI	GTSAC	2 cut(s)	196, 670
TseI	GCWGC	3 cut(s)	344, 391, 421
Tsp45I	GTSAC	2 cut(s)	196, 670
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	525
VpaK11BI	GGWCC	2 cut(s)	174, 224
XcmI	CCANNNNNNNNNTGG	1 cut(s)	815
XhoI	CTCGAG	1 cut(s)	101
XspI	CTAG	2 cut(s)	600, 907
ZrmI	AGTACT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.