DDB1- and CUL4-associated factor homolog
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1799 |
| AarI | CACCTGC | 1 cut(s) | 2980 |
| AatII | GACGTC | 2 cut(s) | 674, 2712 |
| Acc36I | ACCTGC | 4 cut(s) | 2980, 3337, 3513, 3933 |
| AccB1I | GGYRCC | 1 cut(s) | 85 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 968 |
| AccBSI | CCGCTC | 2 cut(s) | 1541, 2677 |
| AccI | GTMKAC | 1 cut(s) | 1788 |
| AccII | CGCG | 8 cut(s) | 59, 1956, 2622, 2775, 2781, 2783, 2922, 3150 |
| AccIII | TCCGGA | 4 cut(s) | 674, 1821, 1911, 2638 |
| AclI | AACGTT | 1 cut(s) | 940 |
| AclWI | GGATC | 8 cut(s) | 842, 1186, 1824, 2165, 2630, 2708, 2785, 3683 |
| AcoI | YGGCCR | 4 cut(s) | 165, 2776, 2859, 3369 |
| AcsI | RAATTY | 3 cut(s) | 1043, 1234, 1490 |
| AcuI | CTGAAG | 5 cut(s) | 623, 1422, 3202, 3686, 3732 |
| AcyI | GRCGYC | 3 cut(s) | 86, 671, 2709 |
| AfaI | GTAC | 7 cut(s) | 1225, 1848, 2903, 3153, 3585, 3617, 3836 |
| AfeI | AGCGCT | 1 cut(s) | 2736 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 645, 3633 |
| AjiI | CACGTC | 2 cut(s) | 1243, 1792 |
| AjnI | CCWGG | 9 cut(s) | 33, 39, 417, 900, 1332, 2502, 2589, 2959, 3177 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 551, 583 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 2507, 2539, 2909, 2941 |
| Alw21I | GWGCWC | 1 cut(s) | 3954 |
| Alw26I | GTCTC | 9 cut(s) | 518, 541, 589, 758, 1209, 1727, 3470, 3620, 3641 |
| Alw44I | GTGCAC | 1 cut(s) | 3950 |
| AlwI | GGATC | 8 cut(s) | 842, 1186, 1824, 2165, 2630, 2708, 2785, 3683 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 428, 1400 |
| Ama87I | CYCGRG | 1 cut(s) | 2570 |
| Aor13HI | TCCGGA | 4 cut(s) | 674, 1821, 1911, 2638 |
| Aor51HI | AGCGCT | 1 cut(s) | 2736 |
| ApaLI | GTGCAC | 1 cut(s) | 3950 |
| ApoI | RAATTY | 3 cut(s) | 1043, 1234, 1490 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3184, 3216 |
| AseI | ATTAAT | 2 cut(s) | 371, 3917 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2840, 3654 |
| AspLEI | GCGC | 8 cut(s) | 61, 88, 1089, 2624, 2737, 2783, 2785, 2981 |
| AspS9I | GGNCC | 8 cut(s) | 37, 43, 1763, 2249, 2644, 2755, 3700, 3730 |
| AsuC2I | CCSGG | 2 cut(s) | 83, 1176 |
| AsuII | TTCGAA | 1 cut(s) | 3603 |
| AvaI | CYCGRG | 1 cut(s) | 2570 |
| AvaII | GGWCC | 4 cut(s) | 1763, 2644, 2755, 3700 |
| BaeGI | GKGCMC | 2 cut(s) | 1111, 3954 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 895, 928 |
| BalI | TGGCCA | 3 cut(s) | 167, 2861, 3371 |
| BanI | GGYRCC | 1 cut(s) | 85 |
| BanII | GRGCYC | 1 cut(s) | 2499 |
| BauI | CACGAG | 1 cut(s) | 1017 |
| BbsI | GAAGAC | 8 cut(s) | 126, 135, 156, 492, 611, 2199, 2220, 3847 |
| Bbv12I | GWGCWC | 1 cut(s) | 3954 |
| BbvCI | CCTCAGC | 2 cut(s) | 2481, 3423 |
| BceAI | ACGGC | 4 cut(s) | 344, 2680, 2783, 2871 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1499, 1533, 2207, 2241 |
| BciT130I | CCWGG | 9 cut(s) | 35, 41, 419, 902, 1334, 2504, 2591, 2961, 3179 |
| BciVI | GTATCC | 2 cut(s) | 3124, 3606 |
| BclI | TGATCA | 1 cut(s) | 2085 |
| BcnI | CCSGG | 2 cut(s) | 83, 1176 |
| BcoDI | GTCTC | 9 cut(s) | 518, 541, 589, 758, 1209, 1727, 3470, 3620, 3641 |
| BfaI | CTAG | 9 cut(s) | 332, 750, 1116, 1263, 1370, 1407, 1611, 2124, 2246 |
| BfmI | CTRYAG | 4 cut(s) | 916, 1392, 1425, 1518 |
| BfoI | RGCGCY | 3 cut(s) | 89, 2738, 2982 |
| BfuAI | ACCTGC | 4 cut(s) | 2980, 3337, 3513, 3933 |
| BfuI | GTATCC | 2 cut(s) | 3124, 3606 |
| BmcAI | AGTACT | 1 cut(s) | 3617 |
| Bme18I | GGWCC | 4 cut(s) | 1763, 2644, 2755, 3700 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 645, 3633 |
| BmeT110I | CYCGRG | 1 cut(s) | 2570 |
| BmgBI | CACGTC | 2 cut(s) | 1243, 1792 |
| BmgT120I | GGNCC | 8 cut(s) | 37, 43, 1763, 2249, 2644, 2755, 3700, 3730 |
| BmiI | GGNNCC | 7 cut(s) | 87, 111, 138, 899, 2508, 2646, 3701 |
| BmrI | ACTGGG | 3 cut(s) | 520, 651, 3337 |
| BmuI | ACTGGG | 3 cut(s) | 520, 651, 3337 |
| BoxI | GACNNNNGTC | 2 cut(s) | 2726, 3387 |
| BpiI | GAAGAC | 8 cut(s) | 126, 135, 156, 492, 611, 2199, 2220, 3847 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2513, 2545 |
| BpmI | CTGGAG | 1 cut(s) | 3123 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2481, 3423 |
| Bpu14I | TTCGAA | 1 cut(s) | 3603 |
| BpuEI | CTTGAG | 3 cut(s) | 1066, 1751, 2402 |
| BpuMI | CCSGG | 2 cut(s) | 83, 1176 |
| Bsa29I | ATCGAT | 1 cut(s) | 2693 |
| BsaAI | YACGTR | 2 cut(s) | 1028, 2905 |
| BsaBI | GATNNNNATC | 3 cut(s) | 2169, 2699, 3371 |
| BsaHI | GRCGYC | 3 cut(s) | 86, 671, 2709 |
| BsaI | GGTCTC | 2 cut(s) | 589, 3470 |
| BsaWI | WCCGGW | 5 cut(s) | 674, 1821, 1911, 2026, 2638 |
| Bse118I | RCCGGY | 2 cut(s) | 8, 3169 |
| Bse3DI | GCAATG | 2 cut(s) | 307, 2013 |
| Bse8I | GATNNNNATC | 3 cut(s) | 2169, 2699, 3371 |
| BseAI | TCCGGA | 4 cut(s) | 674, 1821, 1911, 2638 |
| BseBI | CCWGG | 9 cut(s) | 35, 41, 419, 902, 1334, 2504, 2591, 2961, 3179 |
| BseCI | ATCGAT | 1 cut(s) | 2693 |
| BseJI | GATNNNNATC | 3 cut(s) | 2169, 2699, 3371 |
| BseMI | GCAATG | 2 cut(s) | 307, 2013 |
| BsePI | GCGCGC | 1 cut(s) | 2781 |
| BseRI | GAGGAG | 9 cut(s) | 122, 149, 293, 948, 1069, 1826, 2382, 2534, 3884 |
| BseSI | GKGCMC | 2 cut(s) | 1111, 3954 |
| BseX3I | CGGCCG | 1 cut(s) | 2776 |
| BseYI | CCCAGC | 1 cut(s) | 215 |
| BsgI | GTGCAG | 2 cut(s) | 1497, 2888 |
| Bsh1236I | CGCG | 8 cut(s) | 59, 1956, 2622, 2775, 2781, 2783, 2922, 3150 |
| Bsh1285I | CGRYCG | 2 cut(s) | 543, 2779 |
| BshNI | GGYRCC | 1 cut(s) | 85 |
| BshVI | ATCGAT | 1 cut(s) | 2693 |
| BsiEI | CGRYCG | 2 cut(s) | 543, 2779 |
| BsiHKAI | GWGCWC | 1 cut(s) | 3954 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2570 |
| BslFI | GGGAC | 4 cut(s) | 1209, 2279, 2369, 3713 |
| BsmAI | GTCTC | 9 cut(s) | 518, 541, 589, 758, 1209, 1727, 3470, 3620, 3641 |
| BsmBI | CGTCTC | 1 cut(s) | 3641 |
| BsmFI | GGGAC | 4 cut(s) | 1209, 2279, 2369, 3713 |
| BsmI | GAATGC | 3 cut(s) | 1288, 1597, 2382 |
| Bso31I | GGTCTC | 2 cut(s) | 589, 3470 |
| BsoBI | CYCGRG | 1 cut(s) | 2570 |
| Bsp119I | TTCGAA | 1 cut(s) | 3603 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1111, 2499, 3954 |
| Bsp13I | TCCGGA | 4 cut(s) | 674, 1821, 1911, 2638 |
| Bsp19I | CCATGG | 1 cut(s) | 3960 |
| BspDI | ATCGAT | 1 cut(s) | 2693 |
| BspEI | TCCGGA | 4 cut(s) | 674, 1821, 1911, 2638 |
| BspFNI | CGCG | 8 cut(s) | 59, 1956, 2622, 2775, 2781, 2783, 2922, 3150 |
| BspLI | GGNNCC | 7 cut(s) | 87, 111, 138, 899, 2508, 2646, 3701 |
| BspMAI | CTGCAG | 2 cut(s) | 1396, 1522 |
| BspMI | ACCTGC | 4 cut(s) | 2980, 3337, 3513, 3933 |
| BspPI | GGATC | 8 cut(s) | 842, 1186, 1824, 2165, 2630, 2708, 2785, 3683 |
| BspT104I | TTCGAA | 1 cut(s) | 3603 |
| BspT107I | GGYRCC | 1 cut(s) | 85 |
| BspTNI | GGTCTC | 2 cut(s) | 589, 3470 |
| BsrBI | CCGCTC | 2 cut(s) | 1541, 2677 |
| BsrDI | GCAATG | 2 cut(s) | 307, 2013 |
| BsrFI | RCCGGY | 2 cut(s) | 8, 3169 |
| BssAI | RCCGGY | 2 cut(s) | 8, 3169 |
| BssHII | GCGCGC | 1 cut(s) | 2781 |
| BssNI | GRCGYC | 3 cut(s) | 86, 671, 2709 |
| BssSI | CACGAG | 1 cut(s) | 1017 |
| BssT1I | CCWWGG | 4 cut(s) | 46, 168, 851, 3960 |
| Bst2BI | CACGAG | 1 cut(s) | 1017 |
| Bst2UI | CCWGG | 9 cut(s) | 35, 41, 419, 902, 1334, 2504, 2591, 2961, 3179 |
| BstACI | GRCGYC | 3 cut(s) | 86, 671, 2709 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 428, 1418, 3229, 3890 |
| BstBAI | YACGTR | 2 cut(s) | 1028, 2905 |
| BstBI | TTCGAA | 1 cut(s) | 3603 |
| BstC8I | GCNNGC | 8 cut(s) | 10, 99, 103, 924, 2470, 2620, 2783, 3334 |
| BstDSI | CCRYGG | 4 cut(s) | 1099, 1885, 2862, 3960 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2321 |
| BstFNI | CGCG | 8 cut(s) | 59, 1956, 2622, 2775, 2781, 2783, 2922, 3150 |
| BstH2I | RGCGCY | 3 cut(s) | 89, 2738, 2982 |
| BstHHI | GCGC | 8 cut(s) | 61, 88, 1089, 2624, 2737, 2783, 2785, 2981 |
| BstMAI | GTCTC | 9 cut(s) | 518, 541, 589, 758, 1209, 1727, 3470, 3620, 3641 |
| BstMCI | CGRYCG | 2 cut(s) | 543, 2779 |
| BstNI | CCWGG | 9 cut(s) | 35, 41, 419, 902, 1334, 2504, 2591, 2961, 3179 |
| BstNSI | RCATGY | 1 cut(s) | 3897 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 2726, 3387 |
| BstSFI | CTRYAG | 4 cut(s) | 916, 1392, 1425, 1518 |
| BstSLI | GKGCMC | 2 cut(s) | 1111, 3954 |
| BstUI | CGCG | 8 cut(s) | 59, 1956, 2622, 2775, 2781, 2783, 2922, 3150 |
| BstV2I | GAAGAC | 8 cut(s) | 126, 135, 156, 492, 611, 2199, 2220, 3847 |
| BstX2I | RGATCY | 3 cut(s) | 1178, 1816, 3688 |
| BstYI | RGATCY | 3 cut(s) | 1178, 1816, 3688 |
| BstZI | CGGCCG | 1 cut(s) | 2776 |
| Bsu15I | ATCGAT | 1 cut(s) | 2693 |
| BsuI | GTATCC | 2 cut(s) | 3124, 3606 |
| BsuTUI | ATCGAT | 1 cut(s) | 2693 |
| BtgI | CCRYGG | 4 cut(s) | 1099, 1885, 2862, 3960 |
| BtrI | CACGTC | 2 cut(s) | 1243, 1792 |
| BtsI | GCAGTG | 2 cut(s) | 1015, 2452 |
| BveI | ACCTGC | 4 cut(s) | 2980, 3337, 3513, 3933 |
| Cac8I | GCNNGC | 8 cut(s) | 10, 99, 103, 924, 2470, 2620, 2783, 3334 |
| CaiI | CAGNNNCTG | 2 cut(s) | 428, 1400 |
| CciNI | GCGGCCGC | 1 cut(s) | 2776 |
| CfoI | GCGC | 8 cut(s) | 61, 88, 1089, 2624, 2737, 2783, 2785, 2981 |
| Cfr10I | RCCGGY | 2 cut(s) | 8, 3169 |
| Cfr13I | GGNCC | 8 cut(s) | 37, 43, 1763, 2249, 2644, 2755, 3700, 3730 |
| ClaI | ATCGAT | 1 cut(s) | 2693 |
| Csp6I | GTAC | 7 cut(s) | 1224, 1847, 2902, 3152, 3584, 3616, 3835 |
| CviQI | GTAC | 7 cut(s) | 1224, 1847, 2902, 3152, 3584, 3616, 3835 |
| DinI | GGCGCC | 1 cut(s) | 87 |
| DraI | TTTAAA | 1 cut(s) | 3307 |
| DriI | GACNNNNNGTC | 2 cut(s) | 645, 3633 |
| EaeI | YGGCCR | 4 cut(s) | 165, 2776, 2859, 3369 |
| EagI | CGGCCG | 1 cut(s) | 2776 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 645, 3633 |
| EciI | GGCGGA | 3 cut(s) | 60, 2515, 2620 |
| EclXI | CGGCCG | 1 cut(s) | 2776 |
| Eco130I | CCWWGG | 4 cut(s) | 46, 168, 851, 3960 |
| Eco147I | AGGCCT | 1 cut(s) | 3799 |
| Eco24I | GRGCYC | 1 cut(s) | 2499 |
| Eco31I | GGTCTC | 2 cut(s) | 589, 3470 |
| Eco32I | GATATC | 1 cut(s) | 1360 |
| Eco47I | GGWCC | 4 cut(s) | 1763, 2644, 2755, 3700 |
| Eco47III | AGCGCT | 1 cut(s) | 2736 |
| Eco52I | CGGCCG | 1 cut(s) | 2776 |
| Eco57I | CTGAAG | 5 cut(s) | 623, 1422, 3202, 3686, 3732 |
| Eco88I | CYCGRG | 1 cut(s) | 2570 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2321 |
| EcoO109I | RGGNCCY | 3 cut(s) | 2249, 2644, 3700 |
| EcoRI | GAATTC | 2 cut(s) | 1234, 1490 |
| EcoRII | CCWGG | 9 cut(s) | 33, 39, 417, 900, 1332, 2502, 2589, 2959, 3177 |
| EcoRV | GATATC | 1 cut(s) | 1360 |
| EcoT14I | CCWWGG | 4 cut(s) | 46, 168, 851, 3960 |
| EcoT22I | ATGCAT | 1 cut(s) | 3895 |
| EcoT38I | GRGCYC | 1 cut(s) | 2499 |
| EgeI | GGCGCC | 1 cut(s) | 87 |
| EheI | GGCGCC | 1 cut(s) | 87 |
| ErhI | CCWWGG | 4 cut(s) | 46, 168, 851, 3960 |
| Esp3I | CGTCTC | 1 cut(s) | 3641 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1465, 1497, 1834, 1866 |
| FaqI | GGGAC | 4 cut(s) | 1209, 2279, 2369, 3713 |
| FbaI | TGATCA | 1 cut(s) | 2085 |
| FblI | GTMKAC | 1 cut(s) | 1788 |
| FriOI | GRGCYC | 1 cut(s) | 2499 |
| FspBI | CTAG | 9 cut(s) | 332, 750, 1116, 1263, 1370, 1407, 1611, 2124, 2246 |
| GlaI | GCGC | 8 cut(s) | 60, 87, 1088, 2623, 2736, 2782, 2784, 2980 |
| GsaI | CCCAGC | 1 cut(s) | 219 |
| GsuI | CTGGAG | 1 cut(s) | 3123 |
| HaeII | RGCGCY | 3 cut(s) | 89, 2738, 2982 |
| HhaI | GCGC | 8 cut(s) | 61, 88, 1089, 2624, 2737, 2783, 2785, 2981 |
| Hin1I | GRCGYC | 3 cut(s) | 86, 671, 2709 |
| Hin6I | GCGC | 8 cut(s) | 59, 86, 1087, 2622, 2735, 2781, 2783, 2979 |
| HinP1I | GCGC | 8 cut(s) | 59, 86, 1087, 2622, 2735, 2781, 2783, 2979 |
| HincII | GTYRAC | 4 cut(s) | 669, 1167, 2002, 2713 |
| HindII | GTYRAC | 4 cut(s) | 669, 1167, 2002, 2713 |
| HindIII | AAGCTT | 1 cut(s) | 1207 |
| HpaI | GTTAAC | 1 cut(s) | 2002 |
| Hpy166II | GTNNAC | 9 cut(s) | 452, 669, 1167, 1789, 1847, 2002, 2713, 3459, 3952 |
| Hpy8I | GTNNAC | 9 cut(s) | 452, 669, 1167, 1789, 1847, 2002, 2713, 3459, 3952 |
| Hpy99I | CGWCG | 8 cut(s) | 23, 128, 1956, 2222, 2225, 2586, 2711, 2804 |
| HpyCH4IV | ACGT | 9 cut(s) | 489, 671, 940, 1027, 1242, 1791, 2709, 2904, 3634 |
| HpySE526I | ACGT | 9 cut(s) | 489, 671, 940, 1027, 1242, 1791, 2709, 2904, 3634 |
| Hsp92I | GRCGYC | 3 cut(s) | 86, 671, 2709 |
| HspAI | GCGC | 8 cut(s) | 59, 86, 1087, 2622, 2735, 2781, 2783, 2979 |
| KasI | GGCGCC | 1 cut(s) | 85 |
| Kpn2I | TCCGGA | 4 cut(s) | 674, 1821, 1911, 2638 |
| KroI | GCCGGC | 1 cut(s) | 8 |
| KroNI | GCCGGC | 1 cut(s) | 10 |
| Ksp22I | TGATCA | 1 cut(s) | 2085 |
| KspAI | GTTAAC | 1 cut(s) | 2002 |
| MaeI | CTAG | 9 cut(s) | 332, 750, 1116, 1263, 1370, 1407, 1611, 2124, 2246 |
| MaeII | ACGT | 9 cut(s) | 489, 671, 940, 1027, 1242, 1791, 2709, 2904, 3634 |
| MaeIII | GTNAC | 5 cut(s) | 856, 3345, 3380, 3532, 3821 |
| MbiI | CCGCTC | 2 cut(s) | 1541, 2677 |
| MfeI | CAATTG | 1 cut(s) | 1572 |
| MflI | RGATCY | 3 cut(s) | 1178, 1816, 3688 |
| MhlI | GDGCHC | 3 cut(s) | 1111, 2499, 3954 |
| MlsI | TGGCCA | 3 cut(s) | 167, 2861, 3371 |
| MluNI | TGGCCA | 3 cut(s) | 167, 2861, 3371 |
| Mly113I | GGCGCC | 1 cut(s) | 86 |
| MmeI | TCCRAC | 3 cut(s) | 1327, 2710, 3187 |
| Mox20I | TGGCCA | 3 cut(s) | 167, 2861, 3371 |
| Mph1103I | ATGCAT | 1 cut(s) | 3895 |
| MroI | TCCGGA | 4 cut(s) | 674, 1821, 1911, 2638 |
| MroNI | GCCGGC | 1 cut(s) | 8 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2840, 3654 |
| MscI | TGGCCA | 3 cut(s) | 167, 2861, 3371 |
| MseI | TTAA | 8 cut(s) | 371, 758, 1878, 2001, 2973, 3306, 3486, 3917 |
| MslI | CAYNNNNRTG | 3 cut(s) | 843, 1656, 3450 |
| Msp20I | TGGCCA | 3 cut(s) | 167, 2861, 3371 |
| MspA1I | CMGCKG | 2 cut(s) | 425, 1162 |
| MssI | GTTTAAAC | 1 cut(s) | 3307 |
| MunI | CAATTG | 1 cut(s) | 1572 |
| Mva1269I | GAATGC | 3 cut(s) | 1288, 1597, 2382 |
| MvaI | CCWGG | 9 cut(s) | 35, 41, 419, 902, 1334, 2504, 2591, 2961, 3179 |
| MvnI | CGCG | 8 cut(s) | 59, 1956, 2622, 2775, 2781, 2783, 2922, 3150 |
| NaeI | GCCGGC | 1 cut(s) | 10 |
| NarI | GGCGCC | 1 cut(s) | 86 |
| NciI | CCSGG | 2 cut(s) | 83, 1176 |
| NcoI | CCATGG | 1 cut(s) | 3960 |
| NgoMIV | GCCGGC | 1 cut(s) | 8 |
| NlaIV | GGNNCC | 7 cut(s) | 87, 111, 138, 899, 2508, 2646, 3701 |
| NmeAIII | GCCGAG | 1 cut(s) | 2209 |
| NmuCI | GTSAC | 3 cut(s) | 3345, 3380, 3821 |
| NotI | GCGGCCGC | 1 cut(s) | 2776 |
| NsiI | ATGCAT | 1 cut(s) | 3895 |
| NspI | RCATGY | 1 cut(s) | 3897 |
| NspV | TTCGAA | 1 cut(s) | 3603 |
| PaeR7I | CTCGAG | 1 cut(s) | 2570 |
| PaqCI | CACCTGC | 1 cut(s) | 2980 |
| PasI | CCCWGGG | 1 cut(s) | 34 |
| PauI | GCGCGC | 1 cut(s) | 2781 |
| PceI | AGGCCT | 1 cut(s) | 3799 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 129, 1024 |
| PctI | GAATGC | 3 cut(s) | 1288, 1597, 2382 |
| PdiI | GCCGGC | 1 cut(s) | 10 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2840, 3654 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 968 |
| PfoI | TCCNGGA | 1 cut(s) | 1332 |
| PluTI | GGCGCC | 1 cut(s) | 89 |
| PmeI | GTTTAAAC | 1 cut(s) | 3307 |
| Ppu21I | YACGTR | 2 cut(s) | 1028, 2905 |
| PpuMI | RGGWCCY | 2 cut(s) | 2644, 3700 |
| PshAI | GACNNNNGTC | 2 cut(s) | 2726, 3387 |
| PshBI | ATTAAT | 2 cut(s) | 371, 3917 |
| PsiI | TTATAA | 1 cut(s) | 1799 |
| Psp1406I | AACGTT | 1 cut(s) | 940 |
| Psp5II | RGGWCCY | 2 cut(s) | 2644, 3700 |
| Psp6I | CCWGG | 9 cut(s) | 33, 39, 417, 900, 1332, 2502, 2589, 2959, 3177 |
| PspFI | CCCAGC | 1 cut(s) | 215 |
| PspGI | CCWGG | 9 cut(s) | 33, 39, 417, 900, 1332, 2502, 2589, 2959, 3177 |
| PspN4I | GGNNCC | 7 cut(s) | 87, 111, 138, 899, 2508, 2646, 3701 |
| PspPI | GGNCC | 8 cut(s) | 37, 43, 1763, 2249, 2644, 2755, 3700, 3730 |
| PspPPI | RGGWCCY | 2 cut(s) | 2644, 3700 |
| PstI | CTGCAG | 2 cut(s) | 1396, 1522 |
| PstNI | CAGNNNCTG | 2 cut(s) | 428, 1400 |
| PsuI | RGATCY | 3 cut(s) | 1178, 1816, 3688 |
| PteI | GCGCGC | 1 cut(s) | 2781 |
| PvuII | CAGCTG | 2 cut(s) | 425, 1162 |
| RsaI | GTAC | 7 cut(s) | 1225, 1848, 2903, 3153, 3585, 3617, 3836 |
| RsaNI | GTAC | 7 cut(s) | 1224, 1847, 2902, 3152, 3584, 3616, 3835 |
| RseI | CAYNNNNRTG | 3 cut(s) | 843, 1656, 3450 |
| SaqAI | TTAA | 8 cut(s) | 371, 758, 1878, 2001, 2973, 3306, 3486, 3917 |
| Sau96I | GGNCC | 8 cut(s) | 37, 43, 1763, 2249, 2644, 2755, 3700, 3730 |
| ScaI | AGTACT | 1 cut(s) | 3617 |
| SduI | GDGCHC | 3 cut(s) | 1111, 2499, 3954 |
| SfcI | CTRYAG | 4 cut(s) | 916, 1392, 1425, 1518 |
| SfoI | GGCGCC | 1 cut(s) | 87 |
| Sfr274I | CTCGAG | 1 cut(s) | 2570 |
| SfuI | TTCGAA | 1 cut(s) | 3603 |
| SinI | GGWCC | 4 cut(s) | 1763, 2644, 2755, 3700 |
| SlaI | CTCGAG | 1 cut(s) | 2570 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 843, 1656, 3450 |
| SmlI | CTYRAG | 4 cut(s) | 1081, 1730, 2381, 2570 |
| SmoI | CTYRAG | 4 cut(s) | 1081, 1730, 2381, 2570 |
| SseBI | AGGCCT | 1 cut(s) | 3799 |
| SspDI | GGCGCC | 1 cut(s) | 85 |
| SspMI | CTAG | 9 cut(s) | 332, 750, 1116, 1263, 1370, 1407, 1611, 2124, 2246 |
| StuI | AGGCCT | 1 cut(s) | 3799 |
| StyI | CCWWGG | 4 cut(s) | 46, 168, 851, 3960 |
| TaiI | ACGT | 9 cut(s) | 492, 674, 943, 1030, 1245, 1794, 2712, 2907, 3637 |
| TaqII | GACCGA | 1 cut(s) | 529 |
| TatI | WGTACW | 3 cut(s) | 1223, 3615, 3834 |
| Tru1I | TTAA | 8 cut(s) | 371, 758, 1878, 2001, 2973, 3306, 3486, 3917 |
| Tru9I | TTAA | 8 cut(s) | 371, 758, 1878, 2001, 2973, 3306, 3486, 3917 |
| TseFI | GTSAC | 3 cut(s) | 3345, 3380, 3821 |
| Tsp45I | GTSAC | 3 cut(s) | 3345, 3380, 3821 |
| TspGWI | ACGGA | 7 cut(s) | 403, 701, 2570, 2738, 2756, 3601, 3774 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 968 |
| VneI | GTGCAC | 1 cut(s) | 3950 |
| VpaK11BI | GGWCC | 4 cut(s) | 1763, 2644, 2755, 3700 |
| VspI | ATTAAT | 2 cut(s) | 371, 3917 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2321 |
| XapI | RAATTY | 3 cut(s) | 1043, 1234, 1490 |
| XbaI | TCTAGA | 1 cut(s) | 1115 |
| XceI | RCATGY | 1 cut(s) | 3897 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 3203, 3967 |
| XhoI | CTCGAG | 1 cut(s) | 2570 |
| XmiI | GTMKAC | 1 cut(s) | 1788 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2840, 3654 |
| XspI | CTAG | 9 cut(s) | 332, 750, 1116, 1263, 1370, 1407, 1611, 2124, 2246 |
| ZraI | GACGTC | 2 cut(s) | 672, 2710 |
| ZrmI | AGTACT | 1 cut(s) | 3617 |
| Zsp2I | ATGCAT | 1 cut(s) | 3895 |