FvH4_2g21380

Patellin-4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001644
Physical Location & Seq
Forward (+)
17784410 .. 17786451
2042 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g21380.t1

Sequence Viewer

Length: 1386 bp
ATGATCAGGAGACCCAAAATGAAAAATGAAGCTAATTACCAGGGCAGAGAGCAAGAGCTTGACTCGCCTCTGGGAAATTATGATCAGCCTAATGACTACATCTTGGAAAGCCCCCGGGAATTATGTCCGGATAGTGATGAAGAAGATGTTGAACGTAGAGCTATAGAGGATGATGAGGAAACCAAAGCTGCTTCTGCGTCAATGAAGAAGAAGAAGAGGAAAGCCTTGATGGAATTCCGGTGCAGAGTTGAAGATGCAATTATGGGGAATTACATTCTCGGAAAACCCAGCAGAAGGATTAGCCGAAATGAAAGCTTGAGGCAGAAAGAACAACTCAAGGAGATTACCCTATGGGGTGTGCCTTTGTTGCCAAGCAAAGGCCATCAAGGCACTGATGTTTTGCTCCTCAAATTCTTGAAAGCCCGGGATTACAAGACCAGCGACGCATTTGAAATGCTGAAAAGAACCCTGAAATGGCGAAAAGAATTCAGGACTGATGAAATTCTGGAAGAAGATTTAGGAGTCTCTGGTCTTGAAGACGTGGTGTGCATAAATAGTAGAGACAAAGATGGCCACCCTTTGTGTTACACTTCGTATGGACCTTTCAAGGACAAAGACTTGTACAAGAAAACATTCGGGTCTGAAGCAAGACGCCAACAGTTTTTGAGGTGGAGAGTTCAATTCATTGAAAAGGGAATCAAGAAGCTCAACTTCAAGAGAGGGGTTGATTCGATGGTTCAGATTACGGATTTGAAGGATTCCCCAGGCCCCGATTTTAAGGAGCTTCGTTCGCTTAGTAGCAAAACTCTGCTCTTGTTACAGGACAACTATCCTGAGCTCATTCAAAAGAATATTGTTATCAATGCTCCACTTTGGTATTATGTGTCTCATGTGCTCCGATCAAGGTTTCTAAGTCACAGAACTAAGAAGACGTTCATCTTTGCTAGATCCCAAAAGGTTACAAAGACCCTTCTCAAGTTCATAGAACCAGAAGAACTCCCAGTTCAATATGGTGGCCTCAAAAGAGAGCAAGATGATGAGTTCACACCAGAGGACAAAGTATCTGAGCTCATAATCAAAGCAAACACAATCAACTATATTGAAATTCCAGTTGTTGAGGGTGGATTGACAATGGTGTGGGATCTAACTGTGGTGGGATGGGACGTGTTGTACAAGGAAGAGTTCCTTCCTGATGATGAAGGGTCGTACAACATTCTAATCCAAGACAAGAAGAGACTGCAAGGAGAGAGTGTGAGAAACTCCTTCTACTTTAGTGAACCAGGGAAGATATTCGTGACCTTTGAGAACTGGAATTTCAAGGACAGGAGAGTTCTTTATCGGTATAAAGCCAAACCCACCATTCCCATGTACAGAACAAATAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

462

Amino Acids

54.24

Weight (kDa)

8.93

Isoelectric Point (pI)

56.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO_N PF03765 113 - 154 6.2e-07 CRAL/TRIO, N-terminal domain
CRAL_TRIO PF00650 181 - 339 3.2e-24 CRAL/TRIO domain
GOLD_PATL1_C PF25099 360 - 441 3.2e-28 Patellin-1-like, C-terminal GOLD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 127
AclWI GGATC 2 cut(s) 942, 1149
AcoI YGGCCR 1 cut(s) 571
AcsI RAATTY 6 cut(s) 233, 410, 485, 501, 1104, 1312
AcuI CTGAAG 1 cut(s) 663
AcyI GRCGYC 1 cut(s) 652
AfaI GTAC 4 cut(s) 623, 1172, 1208, 1370
AfiI CCNNNNNNNGG 3 cut(s) 294, 377, 474
AflIII ACRYGT 1 cut(s) 1164
AjiI CACGTC 2 cut(s) 541, 1165
AjnI CCWGG 3 cut(s) 39, 763, 1279
AluBI AGCT 9 cut(s) 32, 58, 161, 188, 315, 706, 784, 838, 1069
AluI AGCT 9 cut(s) 32, 58, 161, 188, 315, 706, 784, 838, 1069
Alw21I GWGCWC 3 cut(s) 840, 897, 1071
Alw26I GTCTC 5 cut(s) 4, 529, 555, 891, 1228
AlwI GGATC 2 cut(s) 942, 1149
Ama87I CYCGRG 2 cut(s) 114, 423
Aor13HI TCCGGA 1 cut(s) 127
AoxI GGCC 4 cut(s) 379, 571, 766, 1015
ApeKI GCWGC 1 cut(s) 188
ApoI RAATTY 6 cut(s) 233, 410, 485, 501, 1104, 1312
Asp700I GAANNNNTTC 3 cut(s) 632, 932, 1289
AspS9I GGNCC 2 cut(s) 599, 767
AsuC2I CCSGG 4 cut(s) 115, 116, 424, 425
AvaI CYCGRG 2 cut(s) 114, 423
AvaII GGWCC 1 cut(s) 599
BalI TGGCCA 1 cut(s) 573
BanII GRGCYC 2 cut(s) 840, 1071
BbsI GAAGAC 2 cut(s) 543, 935
Bbv12I GWGCWC 3 cut(s) 840, 897, 1071
BbvI GCAGC 1 cut(s) 175
BccI CCATC 5 cut(s) 223, 390, 563, 727, 1152
BciT130I CCWGG 3 cut(s) 41, 765, 1281
BclI TGATCA 2 cut(s) 3, 82
BcnI CCSGG 4 cut(s) 115, 116, 424, 425
BcoDI GTCTC 5 cut(s) 4, 529, 555, 891, 1228
BfaI CTAG 1 cut(s) 945
BfmI CTRYAG 1 cut(s) 162
BglI GCCNNNNNGGC 1 cut(s) 387
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
Bme1390I CCNGG 7 cut(s) 41, 115, 116, 424, 425, 765, 1281
Bme18I GGWCC 1 cut(s) 599
BmeT110I CYCGRG 2 cut(s) 114, 423
BmgBI CACGTC 2 cut(s) 541, 1165
BmgT120I GGNCC 2 cut(s) 599, 767
BmiI GGNNCC 1 cut(s) 769
BmrFI CCNGG 7 cut(s) 41, 115, 116, 424, 425, 765, 1281
BmrI ACTGGG 1 cut(s) 995
BmsI GCATC 1 cut(s) 244
BmuI ACTGGG 1 cut(s) 995
BpiI GAAGAC 2 cut(s) 543, 935
BplI GAGNNNNNCTC 2 cut(s) 47, 79
Bpu10I CCTNAGC 1 cut(s) 834
BpuEI CTTGAG 3 cut(s) 320, 337, 959
BpuMI CCSGG 4 cut(s) 115, 116, 424, 425
BsaHI GRCGYC 1 cut(s) 652
BsaI GGTCTC 1 cut(s) 4
BsaJI CCNNGG 6 cut(s) 40, 113, 114, 423, 763, 1280
BsaWI WCCGGW 2 cut(s) 127, 237
BsaXI ACNNNNNCTCC 2 cut(s) 1236, 1266
Bsc4I CCNNNNNNNGG 3 cut(s) 294, 377, 474
Bse1I ACTGG 3 cut(s) 1001, 1109, 1313
BseAI TCCGGA 1 cut(s) 127
BseBI CCWGG 3 cut(s) 41, 765, 1281
BseDI CCNNGG 6 cut(s) 40, 113, 114, 423, 763, 1280
BseGI GGATG 2 cut(s) 175, 1163
BseLI CCNNNNNNNGG 3 cut(s) 294, 377, 474
BseMII CTCAG 2 cut(s) 825, 1056
BseNI ACTGG 3 cut(s) 1001, 1109, 1313
BseRI GAGGAG 1 cut(s) 395
BseXI GCAGC 1 cut(s) 175
BseYI CCCAGC 1 cut(s) 287
BsgI GTGCAG 1 cut(s) 262
BshFI GGCC 4 cut(s) 381, 573, 768, 1017
BsiHKAI GWGCWC 3 cut(s) 840, 897, 1071
BsiHKCI CYCGRG 2 cut(s) 114, 423
BsiSI CCGG 4 cut(s) 115, 128, 238, 424
BslFI GGGAC 1 cut(s) 1175
BslI CCNNNNNNNGG 3 cut(s) 294, 377, 474
BsmAI GTCTC 5 cut(s) 4, 529, 555, 891, 1228
BsmFI GGGAC 1 cut(s) 1175
BsnI GGCC 4 cut(s) 381, 573, 768, 1017
Bso31I GGTCTC 1 cut(s) 4
BsoBI CYCGRG 2 cut(s) 114, 423
Bsp1286I GDGCHC 3 cut(s) 840, 897, 1071
Bsp13I TCCGGA 1 cut(s) 127
Bsp1407I TGTACA 3 cut(s) 621, 1170, 1368
Bsp143I GATC 5 cut(s) 3, 82, 899, 947, 1141
BspANI GGCC 4 cut(s) 381, 573, 768, 1017
BspCNI CTCAG 2 cut(s) 826, 1057
BspEI TCCGGA 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 769
BspPI GGATC 2 cut(s) 942, 1149
BspTNI GGTCTC 1 cut(s) 4
BsrGI TGTACA 3 cut(s) 621, 1170, 1368
BsrI ACTGG 3 cut(s) 1001, 1109, 1313
BssECI CCNNGG 6 cut(s) 40, 113, 114, 423, 763, 1280
BssMI GATC 5 cut(s) 3, 82, 899, 947, 1141
BssNI GRCGYC 1 cut(s) 652
Bst2UI CCWGG 3 cut(s) 41, 765, 1281
Bst4CI ACNGT 2 cut(s) 660, 1150
Bst6I CTCTTC 3 cut(s) 209, 1173, 1226
BstACI GRCGYC 1 cut(s) 652
BstAUI TGTACA 3 cut(s) 621, 1170, 1368
BstDEI CTNAG 5 cut(s) 794, 834, 911, 924, 1065
BstF5I GGATG 2 cut(s) 175, 1163
BstKTI GATC 5 cut(s) 6, 85, 902, 950, 1144
BstMAI GTCTC 5 cut(s) 4, 529, 555, 891, 1228
BstMBI GATC 5 cut(s) 3, 82, 899, 947, 1141
BstMWI GCNNNNNNNGC 5 cut(s) 64, 194, 367, 387, 790
BstNI CCWGG 3 cut(s) 41, 765, 1281
BstSCI CCNGG 7 cut(s) 39, 113, 114, 422, 423, 763, 1279
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 175
BstV2I GAAGAC 2 cut(s) 543, 935
BstX2I RGATCY 2 cut(s) 947, 1141
BstYI RGATCY 2 cut(s) 947, 1141
BsuRI GGCC 4 cut(s) 381, 573, 768, 1017
BtrI CACGTC 2 cut(s) 541, 1165
BtsCI GGATG 2 cut(s) 175, 1163
BtsIMutI CAGTG 1 cut(s) 390
Cfr13I GGNCC 2 cut(s) 599, 767
Cfr9I CCCGGG 2 cut(s) 114, 423
CseI GACGC 3 cut(s) 186, 452, 660
Csp6I GTAC 4 cut(s) 622, 1171, 1207, 1369
CviAII CATG 2 cut(s) 890, 1366
CviQI GTAC 4 cut(s) 622, 1171, 1207, 1369
DdeI CTNAG 5 cut(s) 794, 834, 911, 924, 1065
DpnI GATC 5 cut(s) 5, 84, 901, 949, 1143
DpnII GATC 5 cut(s) 3, 82, 899, 947, 1141
EaeI YGGCCR 1 cut(s) 571
Eam1104I CTCTTC 3 cut(s) 209, 1173, 1226
EarI CTCTTC 3 cut(s) 209, 1173, 1226
Ecl136II GAGCTC 2 cut(s) 838, 1069
Eco24I GRGCYC 2 cut(s) 840, 1071
Eco31I GGTCTC 1 cut(s) 4
Eco47I GGWCC 1 cut(s) 599
Eco53kI GAGCTC 2 cut(s) 838, 1069
Eco57I CTGAAG 1 cut(s) 663
Eco88I CYCGRG 2 cut(s) 114, 423
EcoICRI GAGCTC 2 cut(s) 838, 1069
EcoO109I RGGNCCY 1 cut(s) 767
EcoRI GAATTC 2 cut(s) 233, 485
EcoRII CCWGG 3 cut(s) 39, 763, 1279
EcoT38I GRGCYC 2 cut(s) 840, 1071
FaeI CATG 2 cut(s) 893, 1369
FalI AAGNNNNNCTT 4 cut(s) 695, 727, 1170, 1202
FaqI GGGAC 1 cut(s) 1175
FatI CATG 2 cut(s) 889, 1365
FbaI TGATCA 2 cut(s) 3, 82
Fnu4HI GCNGC 1 cut(s) 189
FokI GGATG 2 cut(s) 182, 1170
FriOI GRGCYC 2 cut(s) 840, 1071
Fsp4HI GCNGC 1 cut(s) 189
FspBI CTAG 1 cut(s) 945
GluI GCNGC 1 cut(s) 189
GsaI CCCAGC 1 cut(s) 291
HaeIII GGCC 4 cut(s) 381, 573, 768, 1017
HapII CCGG 4 cut(s) 115, 128, 238, 424
HgaI GACGC 3 cut(s) 186, 452, 660
Hin1I GRCGYC 1 cut(s) 652
Hin1II CATG 2 cut(s) 893, 1369
HindIII AAGCTT 1 cut(s) 313
HinfI GANTC 5 cut(s) 62, 522, 696, 728, 758
HpaII CCGG 4 cut(s) 115, 128, 238, 424
Hpy166II GTNNAC 2 cut(s) 1044, 1277
Hpy188I TCNGA 5 cut(s) 281, 643, 741, 899, 1066
Hpy8I GTNNAC 2 cut(s) 1044, 1277
Hpy99I CGWCG 1 cut(s) 446
HpyAV CCTTC 6 cut(s) 288, 748, 980, 1193, 1196, 1273
HpyCH4III ACNGT 2 cut(s) 660, 1150
HpyCH4IV ACGT 4 cut(s) 154, 540, 932, 1164
HpyCH4V TGCA 4 cut(s) 243, 257, 549, 1240
HpyF10VI GCNNNNNNNGC 5 cut(s) 64, 194, 367, 387, 790
HpyF3I CTNAG 5 cut(s) 794, 834, 911, 924, 1065
HpySE526I ACGT 4 cut(s) 154, 540, 932, 1164
Hsp92I GRCGYC 1 cut(s) 652
Hsp92II CATG 2 cut(s) 893, 1369
Kpn2I TCCGGA 1 cut(s) 127
Ksp22I TGATCA 2 cut(s) 3, 82
Kzo9I GATC 5 cut(s) 3, 82, 899, 947, 1141
LmnI GCTCC 4 cut(s) 408, 781, 871, 900
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 1 cut(s) 244
MaeI CTAG 1 cut(s) 945
MaeII ACGT 4 cut(s) 154, 540, 932, 1164
MaeIII GTNAC 5 cut(s) 584, 816, 914, 958, 1294
MalI GATC 5 cut(s) 5, 84, 901, 949, 1143
MboI GATC 5 cut(s) 3, 82, 899, 947, 1141
MflI RGATCY 2 cut(s) 947, 1141
MhlI GDGCHC 3 cut(s) 840, 897, 1071
MlsI TGGCCA 1 cut(s) 573
MluNI TGGCCA 1 cut(s) 573
MlyI GAGTC 2 cut(s) 56, 531
Mox20I TGGCCA 1 cut(s) 573
MroI TCCGGA 1 cut(s) 127
MroXI GAANNNNTTC 3 cut(s) 632, 932, 1289
MscI TGGCCA 1 cut(s) 573
MseI TTAA 1 cut(s) 777
MslI CAYNNNNRTG 1 cut(s) 1364
Msp20I TGGCCA 1 cut(s) 573
MspI CCGG 4 cut(s) 115, 128, 238, 424
MspR9I CCNGG 7 cut(s) 41, 115, 116, 424, 425, 765, 1281
MvaI CCWGG 3 cut(s) 41, 765, 1281
MwoI GCNNNNNNNGC 5 cut(s) 64, 194, 367, 387, 790
NciI CCSGG 4 cut(s) 115, 116, 424, 425
NdeII GATC 5 cut(s) 3, 82, 899, 947, 1141
NlaIII CATG 2 cut(s) 893, 1369
NlaIV GGNNCC 1 cut(s) 769
NmuCI GTSAC 2 cut(s) 914, 1294
PdmI GAANNNNTTC 3 cut(s) 632, 932, 1289
PfeI GAWTC 3 cut(s) 696, 728, 758
PkrI GCNGC 1 cut(s) 190
PleI GAGTC 2 cut(s) 56, 530
PpsI GAGTC 2 cut(s) 56, 530
Psp124BI GAGCTC 2 cut(s) 840, 1071
Psp6I CCWGG 3 cut(s) 39, 763, 1279
PspFI CCCAGC 1 cut(s) 287
PspGI CCWGG 3 cut(s) 39, 763, 1279
PspN4I GGNNCC 1 cut(s) 769
PspPI GGNCC 2 cut(s) 599, 767
PsuI RGATCY 2 cut(s) 947, 1141
RsaI GTAC 4 cut(s) 623, 1172, 1208, 1370
RsaNI GTAC 4 cut(s) 622, 1171, 1207, 1369
RseI CAYNNNNRTG 1 cut(s) 1364
SacI GAGCTC 2 cut(s) 840, 1071
SaqAI TTAA 1 cut(s) 777
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 5 cut(s) 3, 82, 899, 947, 1141
Sau96I GGNCC 2 cut(s) 599, 767
SchI GAGTC 2 cut(s) 56, 531
ScrFI CCNGG 7 cut(s) 41, 115, 116, 424, 425, 765, 1281
SduI GDGCHC 3 cut(s) 840, 897, 1071
SfaNI GCATC 1 cut(s) 244
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 599
SmaI CCCGGG 2 cut(s) 116, 425
SmiMI CAYNNNNRTG 1 cut(s) 1364
SmlI CTYRAG 3 cut(s) 316, 335, 974
SmoI CTYRAG 3 cut(s) 316, 335, 974
SspI AATATT 1 cut(s) 853
SspMI CTAG 1 cut(s) 945
SstI GAGCTC 2 cut(s) 840, 1071
StyD4I CCNGG 7 cut(s) 39, 113, 114, 422, 423, 763, 1279
TaaI ACNGT 2 cut(s) 660, 1150
TaiI ACGT 4 cut(s) 157, 543, 935, 1167
TaqI TCGA 1 cut(s) 731
TatI WGTACW 3 cut(s) 621, 1170, 1368
TfiI GAWTC 3 cut(s) 696, 728, 758
Tru1I TTAA 1 cut(s) 777
Tru9I TTAA 1 cut(s) 777
TscAI CASTG 1 cut(s) 397
TseFI GTSAC 2 cut(s) 914, 1294
TseI GCWGC 1 cut(s) 188
Tsp45I GTSAC 2 cut(s) 914, 1294
TspGWI ACGGA 1 cut(s) 761
TspMI CCCGGG 2 cut(s) 114, 423
TspRI CASTG 1 cut(s) 397
VpaK11BI GGWCC 1 cut(s) 599
XapI RAATTY 6 cut(s) 233, 410, 485, 501, 1104, 1312
XmaI CCCGGG 2 cut(s) 114, 423
XmnI GAANNNNTTC 3 cut(s) 632, 932, 1289
XspI CTAG 1 cut(s) 945
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.