Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001644

Physical Location & Seq

Genomic Coordinates Reverse (-)

19945435 .. 19945689

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00180610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGTGTGGGATCTAACCGTGGTGGGATGGGACGTGTGGTACAAGGAAGAGTTCATTCCTGATGATGAAGGGTCATACAAGATTTTACTCCAAGATAAGAAGAGACTGCAAGGGGAGGGTGTAAGAAACTCCTTCTACCTTAGTGAACCAGGGAAGATAATCATTGCACTTGAGAATTGGAATTTCAAGAACAGGAGGGTTCTTTATCGGTATAAAGCCAAACTCACCATTCCCATTTACTTAACAAATAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

84

Amino Acids

10.14

Weight (kDa)

9.22

Isoelectric Point (pI)

31.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GOLD_PATL1_C	PF25099	1 - 64	1.7e-24	Patellin-1-like, C-terminal GOLD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30690 AT1G30690
fragaria_vesca	FvH4_2g21380 FvH4_3g11240 FvH4_3g11240 FvH4_3g14971
malus_domestica	MD05G1196600.v1.1 MD05G1228200.v1.1 MD05G1228900.v1.1 MD05G1265900.v1.1 MD05G1266100.v1.1
prunus_persica	Prupe.4G099600_v2.0.a1 Prupe.4G099600_v2.0.a1 Prupe.4G134100_v2.0.a1 Prupe.8G223200_v2.0.a1
pyrus_communis	pycom05g18370 pycom05g25000 pycom10g20400
rosa_chinensis	RchiOBHm_Chr5g0018181 RchiOBHm_Chr5g0024581 RchiOBHm_Chr6g0287981
rosa_laevigata	RLG00000012449 RLG00000032344 RLG00000032808
rosa_multiflora	Rmu_co8308705.1_g000001 Rmu_sc0005266.1_g000009 Rmu_sc0005699.1_g000006 Rmu_sc0013020.1_g000005
rosa_roxburghii	Rroxscaffold_1G00054670 Rroxscaffold_1G00054680 Rroxscaffold_7G00180610
rosa_rugosa	Rorug05G0041000 Rorug05G0084100 Rorug05G0084200 Rorug06G0193700
rosa_samantha	Rh5AG133900 Rh5AG175800 Rh5BG132400 Rh5BG173200 Rh5CG144600 Rh5CG189200 Rh6AG303200 Rh6BG309400 Rh6CG300400 Rh6CG317000 Rh6DG301900
rosa_wichuraiana	Rw5G011700 Rw5G015890 Rw6G026220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	18
AcsI	RAATTY	1 cut(s)	181
AfaI	GTAC	1 cut(s)	41
AflIII	ACRYGT	1 cut(s)	33
AgsI	TTSAA	1 cut(s)	187
AjiI	CACGTC	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	97
AlwI	GGATC	1 cut(s)	18
ApoI	RAATTY	1 cut(s)	181
AsuHPI	GGTGA	1 cut(s)	217
BccI	CCATC	1 cut(s)	21
BciT130I	CCWGG	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	97
Bme1390I	CCNGG	1 cut(s)	150
BmgBI	CACGTC	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	18, 149
Bse3DI	GCAATG	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	2 cut(s)	18, 149
BseGI	GGATG	1 cut(s)	32
BseMI	GCAATG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	44
Bsp143I	GATC	1 cut(s)	10
BspPI	GGATC	1 cut(s)	18
BsrDI	GCAATG	1 cut(s)	162
BssECI	CCNNGG	2 cut(s)	18, 149
BssMI	GATC	1 cut(s)	10
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	19
Bst6I	CTCTTC	2 cut(s)	42, 95
BstDEI	CTNAG	1 cut(s)	140
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	32
BstKTI	GATC	1 cut(s)	13
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BtgI	CCRYGG	1 cut(s)	18
BtrI	CACGTC	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	40
CviJI	RGCY	1 cut(s)	218
CviKI_1	RGCY	1 cut(s)	218
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
Eam1104I	CTCTTC	2 cut(s)	42, 95
EarI	CTCTTC	2 cut(s)	42, 95
EcoRII	CCWGG	1 cut(s)	148
FaiI	YATR	2 cut(s)	76, 213
FaqI	GGGAC	1 cut(s)	44
FokI	GGATG	1 cut(s)	39
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	146
Hpy188III	TCNNGA	2 cut(s)	59, 187
Hpy8I	GTNNAC	1 cut(s)	146
HpyAV	CCTTC	2 cut(s)	62, 142
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	2 cut(s)	109, 167
HpyF3I	CTNAG	1 cut(s)	140
HpySE526I	ACGT	1 cut(s)	33
Kzo9I	GATC	1 cut(s)	10
LpnPI	CCDG	4 cut(s)	72, 135, 162, 178
MaeII	ACGT	1 cut(s)	33
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MboII	GAAGA	3 cut(s)	59, 112, 166
MflI	RGATCY	1 cut(s)	10
MluCI	AATT	2 cut(s)	175, 181
MnlI	CCTC	2 cut(s)	109, 189
MseI	TTAA	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	150
NdeII	GATC	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	10
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	242
Sau3AI	GATC	1 cut(s)	10
ScrFI	CCNGG	1 cut(s)	150
SetI	ASST	2 cut(s)	36, 141
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	2 cut(s)	175, 181
StyD4I	CCNGG	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	19
TaiI	ACGT	1 cut(s)	36
TasI	AATT	2 cut(s)	175, 181
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
TspDTI	ATGAA	2 cut(s)	43, 81
XapI	RAATTY	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.