CRAL/TRIO, N-terminal domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1460 |
| AarI | CACCTGC | 1 cut(s) | 755 |
| Acc16I | TGCGCA | 1 cut(s) | 2052 |
| Acc36I | ACCTGC | 2 cut(s) | 755, 1591 |
| Acc65I | GGTACC | 1 cut(s) | 1156 |
| AccB1I | GGYRCC | 1 cut(s) | 1156 |
| AccII | CGCG | 2 cut(s) | 1449, 2145 |
| AciI | CCGC | 5 cut(s) | 176, 1058, 1821, 1831, 1869 |
| AclI | AACGTT | 1 cut(s) | 2100 |
| AclWI | GGATC | 3 cut(s) | 1804, 2017, 2131 |
| AcoI | YGGCCR | 1 cut(s) | 180 |
| AcsI | RAATTY | 4 cut(s) | 1313, 1634, 1988, 2071 |
| AcuI | CTGAAG | 4 cut(s) | 78, 1601, 1847, 1878 |
| AfaI | GTAC | 4 cut(s) | 1158, 1676, 1920, 1974 |
| AfeI | AGCGCT | 1 cut(s) | 1699 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 97, 1175, 1762, 1928 |
| AflII | CTTAAG | 2 cut(s) | 1213, 1550 |
| AflIII | ACRYGT | 1 cut(s) | 2143 |
| AjnI | CCWGG | 5 cut(s) | 294, 1513, 1561, 1760, 2092 |
| AleI | CACNNNNGTG | 1 cut(s) | 1193 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1794, 1826 |
| Alw26I | GTCTC | 1 cut(s) | 896 |
| AlwI | GGATC | 3 cut(s) | 1804, 2017, 2131 |
| Aor51HI | AGCGCT | 1 cut(s) | 1699 |
| AoxI | GGCC | 2 cut(s) | 180, 1075 |
| ApeKI | GCWGC | 2 cut(s) | 1396, 1793 |
| ApoI | RAATTY | 4 cut(s) | 1313, 1634, 1988, 2071 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1359, 1391 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1905, 1992 |
| Asp718I | GGTACC | 1 cut(s) | 1156 |
| AspLEI | GCGC | 2 cut(s) | 1700, 2053 |
| AspS9I | GGNCC | 1 cut(s) | 1565 |
| AsuHPI | GGTGA | 7 cut(s) | 152, 329, 338, 353, 404, 1034, 1331 |
| AvaII | GGWCC | 1 cut(s) | 1565 |
| BanI | GGYRCC | 1 cut(s) | 1156 |
| BbsI | GAAGAC | 1 cut(s) | 1738 |
| BbvI | GCAGC | 2 cut(s) | 1383, 1780 |
| BccI | CCATC | 2 cut(s) | 535, 1474 |
| BciT130I | CCWGG | 5 cut(s) | 296, 1515, 1563, 1762, 2094 |
| BciVI | GTATCC | 1 cut(s) | 1605 |
| BclI | TGATCA | 2 cut(s) | 472, 1105 |
| BcoDI | GTCTC | 1 cut(s) | 896 |
| BfaI | CTAG | 6 cut(s) | 284, 1170, 1221, 1430, 1538, 1695 |
| BfmI | CTRYAG | 1 cut(s) | 1794 |
| BfoI | RGCGCY | 1 cut(s) | 1701 |
| BfrI | CTTAAG | 2 cut(s) | 1213, 1550 |
| BfuAI | ACCTGC | 2 cut(s) | 755, 1591 |
| BfuI | GTATCC | 1 cut(s) | 1605 |
| BisI | GCNGC | 2 cut(s) | 1397, 1794 |
| BlsI | GCNGC | 2 cut(s) | 1398, 1795 |
| Bme1390I | CCNGG | 5 cut(s) | 296, 1515, 1563, 1762, 2094 |
| Bme18I | GGWCC | 1 cut(s) | 1565 |
| BmgT120I | GGNCC | 1 cut(s) | 1565 |
| BmiI | GGNNCC | 2 cut(s) | 1158, 1333 |
| BmrFI | CCNGG | 5 cut(s) | 296, 1515, 1563, 1762, 2094 |
| BmsI | GCATC | 2 cut(s) | 1231, 1852 |
| BpiI | GAAGAC | 1 cut(s) | 1738 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 482, 514 |
| BpuEI | CTTGAG | 2 cut(s) | 596, 1766 |
| Bsa29I | ATCGAT | 2 cut(s) | 1131, 2155 |
| BsaJI | CCNNGG | 4 cut(s) | 81, 183, 294, 1761 |
| BsaWI | WCCGGW | 1 cut(s) | 1372 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2032, 2062 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 97, 1175, 1762, 1928 |
| BseBI | CCWGG | 5 cut(s) | 296, 1515, 1563, 1762, 2094 |
| BseCI | ATCGAT | 2 cut(s) | 1131, 2155 |
| BseDI | CCNNGG | 4 cut(s) | 81, 183, 294, 1761 |
| BseGI | GGATG | 7 cut(s) | 166, 214, 307, 451, 1312, 1369, 1411 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 97, 1175, 1762, 1928 |
| BseMII | CTCAG | 3 cut(s) | 159, 747, 816 |
| BseRI | GAGGAG | 4 cut(s) | 200, 386, 788, 791 |
| BseXI | GCAGC | 2 cut(s) | 1383, 1780 |
| BseYI | CCCAGC | 1 cut(s) | 695 |
| Bsh1236I | CGCG | 2 cut(s) | 1449, 2145 |
| BshFI | GGCC | 2 cut(s) | 182, 1077 |
| BshNI | GGYRCC | 1 cut(s) | 1156 |
| BshVI | ATCGAT | 2 cut(s) | 1131, 2155 |
| BsiSI | CCGG | 1 cut(s) | 1373 |
| BslFI | GGGAC | 3 cut(s) | 32, 524, 1447 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 97, 1175, 1762, 1928 |
| BsmAI | GTCTC | 1 cut(s) | 896 |
| BsmBI | CGTCTC | 1 cut(s) | 896 |
| BsmFI | GGGAC | 3 cut(s) | 32, 524, 1447 |
| BsnI | GGCC | 2 cut(s) | 182, 1077 |
| Bsp68I | TCGCGA | 1 cut(s) | 1449 |
| BspACI | CCGC | 5 cut(s) | 176, 1058, 1821, 1831, 1869 |
| BspANI | GGCC | 2 cut(s) | 182, 1077 |
| BspCNI | CTCAG | 3 cut(s) | 160, 748, 817 |
| BspDI | ATCGAT | 2 cut(s) | 1131, 2155 |
| BspFNI | CGCG | 2 cut(s) | 1449, 2145 |
| BspLI | GGNNCC | 2 cut(s) | 1158, 1333 |
| BspMAI | CTGCAG | 1 cut(s) | 1798 |
| BspMI | ACCTGC | 2 cut(s) | 755, 1591 |
| BspPI | GGATC | 3 cut(s) | 1804, 2017, 2131 |
| BspQI | GCTCTTC | 1 cut(s) | 18 |
| BspT107I | GGYRCC | 1 cut(s) | 1156 |
| BspTI | CTTAAG | 2 cut(s) | 1213, 1550 |
| BssECI | CCNNGG | 4 cut(s) | 81, 183, 294, 1761 |
| BssT1I | CCWWGG | 1 cut(s) | 81 |
| Bst2UI | CCWGG | 5 cut(s) | 296, 1515, 1563, 1762, 2094 |
| Bst4CI | ACNGT | 5 cut(s) | 842, 955, 1022, 1882, 1957 |
| Bst6I | CTCTTC | 5 cut(s) | 18, 371, 453, 723, 1002 |
| BstAFI | CTTAAG | 2 cut(s) | 1213, 1550 |
| BstC8I | GCNNGC | 2 cut(s) | 1753, 1823 |
| BstDEI | CTNAG | 6 cut(s) | 168, 756, 825, 975, 1572, 1685 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1173 |
| BstF5I | GGATG | 7 cut(s) | 166, 214, 307, 451, 1312, 1369, 1411 |
| BstFNI | CGCG | 2 cut(s) | 1449, 2145 |
| BstH2I | RGCGCY | 1 cut(s) | 1701 |
| BstHHI | GCGC | 2 cut(s) | 1700, 2053 |
| BstMAI | GTCTC | 1 cut(s) | 896 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1064, 1688, 1697 |
| BstNI | CCWGG | 5 cut(s) | 296, 1515, 1563, 1762, 2094 |
| BstNSI | RCATGY | 2 cut(s) | 1561, 1592 |
| BstSCI | CCNGG | 5 cut(s) | 294, 1513, 1561, 1760, 2092 |
| BstSFI | CTRYAG | 1 cut(s) | 1794 |
| BstUI | CGCG | 2 cut(s) | 1449, 2145 |
| BstV1I | GCAGC | 2 cut(s) | 1383, 1780 |
| BstV2I | GAAGAC | 1 cut(s) | 1738 |
| Bsu15I | ATCGAT | 2 cut(s) | 1131, 2155 |
| BsuI | GTATCC | 1 cut(s) | 1605 |
| BsuRI | GGCC | 2 cut(s) | 182, 1077 |
| BsuTUI | ATCGAT | 2 cut(s) | 1131, 2155 |
| BtsCI | GGATG | 7 cut(s) | 166, 214, 307, 451, 1312, 1369, 1411 |
| BtsIMutI | CAGTG | 2 cut(s) | 165, 1188 |
| BtuMI | TCGCGA | 1 cut(s) | 1449 |
| BveI | ACCTGC | 2 cut(s) | 755, 1591 |
| Cac8I | GCNNGC | 2 cut(s) | 1753, 1823 |
| CfoI | GCGC | 2 cut(s) | 1700, 2053 |
| Cfr13I | GGNCC | 1 cut(s) | 1565 |
| ClaI | ATCGAT | 2 cut(s) | 1131, 2155 |
| CseI | GACGC | 1 cut(s) | 1512 |
| Csp6I | GTAC | 4 cut(s) | 1157, 1675, 1919, 1973 |
| CviAII | CATG | 4 cut(s) | 620, 1016, 1558, 1589 |
| CviQI | GTAC | 4 cut(s) | 1157, 1675, 1919, 1973 |
| DdeI | CTNAG | 6 cut(s) | 168, 756, 825, 975, 1572, 1685 |
| EaeI | YGGCCR | 1 cut(s) | 180 |
| Eam1104I | CTCTTC | 5 cut(s) | 18, 371, 453, 723, 1002 |
| EarI | CTCTTC | 5 cut(s) | 18, 371, 453, 723, 1002 |
| Eco130I | CCWWGG | 1 cut(s) | 81 |
| Eco147I | AGGCCT | 1 cut(s) | 1077 |
| Eco32I | GATATC | 4 cut(s) | 88, 753, 882, 1141 |
| Eco47I | GGWCC | 1 cut(s) | 1565 |
| Eco47III | AGCGCT | 1 cut(s) | 1699 |
| Eco57I | CTGAAG | 4 cut(s) | 78, 1601, 1847, 1878 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1173 |
| EcoRI | GAATTC | 1 cut(s) | 1988 |
| EcoRII | CCWGG | 5 cut(s) | 294, 1513, 1561, 1760, 2092 |
| EcoRV | GATATC | 4 cut(s) | 88, 753, 882, 1141 |
| EcoT14I | CCWWGG | 1 cut(s) | 81 |
| ErhI | CCWWGG | 1 cut(s) | 81 |
| Esp3I | CGTCTC | 1 cut(s) | 896 |
| FaeI | CATG | 4 cut(s) | 623, 1019, 1561, 1592 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1490, 1522 |
| FaqI | GGGAC | 3 cut(s) | 32, 524, 1447 |
| FatI | CATG | 4 cut(s) | 619, 1015, 1557, 1588 |
| FauI | CCCGC | 2 cut(s) | 1814, 1824 |
| FauNDI | CATATG | 1 cut(s) | 2014 |
| FbaI | TGATCA | 2 cut(s) | 472, 1105 |
| Fnu4HI | GCNGC | 2 cut(s) | 1397, 1794 |
| FokI | GGATG | 7 cut(s) | 173, 221, 314, 458, 1319, 1356, 1418 |
| Fsp4HI | GCNGC | 2 cut(s) | 1397, 1794 |
| FspBI | CTAG | 6 cut(s) | 284, 1170, 1221, 1430, 1538, 1695 |
| FspI | TGCGCA | 1 cut(s) | 2052 |
| GlaI | GCGC | 2 cut(s) | 1699, 2052 |
| GluI | GCNGC | 2 cut(s) | 1397, 1794 |
| GsaI | CCCAGC | 1 cut(s) | 699 |
| HaeII | RGCGCY | 1 cut(s) | 1701 |
| HaeIII | GGCC | 2 cut(s) | 182, 1077 |
| HapII | CCGG | 1 cut(s) | 1373 |
| HgaI | GACGC | 1 cut(s) | 1512 |
| HhaI | GCGC | 2 cut(s) | 1700, 2053 |
| Hin1II | CATG | 4 cut(s) | 623, 1019, 1561, 1592 |
| Hin6I | GCGC | 2 cut(s) | 1698, 2051 |
| HinP1I | GCGC | 2 cut(s) | 1698, 2051 |
| HindIII | AAGCTT | 1 cut(s) | 1118 |
| HinfI | GANTC | 5 cut(s) | 143, 329, 1295, 1444, 1841 |
| HpaII | CCGG | 1 cut(s) | 1373 |
| HphI | GGTGA | 7 cut(s) | 152, 329, 338, 353, 404, 1034, 1331 |
| Hpy166II | GTNNAC | 1 cut(s) | 1975 |
| Hpy188I | TCNGA | 8 cut(s) | 58, 718, 757, 886, 1497, 1846, 1900, 2069 |
| Hpy8I | GTNNAC | 1 cut(s) | 1975 |
| HpyCH4III | ACNGT | 5 cut(s) | 842, 955, 1022, 1882, 1957 |
| HpyCH4IV | ACGT | 2 cut(s) | 1125, 2100 |
| HpyCH4V | TGCA | 3 cut(s) | 233, 1643, 1796 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1064, 1688, 1697 |
| HpyF3I | CTNAG | 6 cut(s) | 168, 756, 825, 975, 1572, 1685 |
| HpySE526I | ACGT | 2 cut(s) | 1125, 2100 |
| Hsp92II | CATG | 4 cut(s) | 623, 1019, 1561, 1592 |
| HspAI | GCGC | 2 cut(s) | 1698, 2051 |
| KpnI | GGTACC | 1 cut(s) | 1160 |
| Ksp22I | TGATCA | 2 cut(s) | 472, 1105 |
| LguI | GCTCTTC | 1 cut(s) | 18 |
| LmnI | GCTCC | 3 cut(s) | 616, 1272, 1520 |
| Lsp1109I | GCAGC | 2 cut(s) | 1383, 1780 |
| LweI | GCATC | 2 cut(s) | 1231, 1852 |
| MaeI | CTAG | 6 cut(s) | 284, 1170, 1221, 1430, 1538, 1695 |
| MaeII | ACGT | 2 cut(s) | 1125, 2100 |
| MaeIII | GTNAC | 4 cut(s) | 163, 1319, 1765, 1951 |
| MfeI | CAATTG | 1 cut(s) | 2112 |
| MluI | ACGCGT | 1 cut(s) | 2143 |
| MlyI | GAGTC | 1 cut(s) | 1850 |
| MmeI | TCCRAC | 1 cut(s) | 2021 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1905, 1992 |
| MseI | TTAA | 8 cut(s) | 515, 1214, 1392, 1509, 1551, 1718, 1940, 2108 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1020, 1193 |
| MspCI | CTTAAG | 2 cut(s) | 1213, 1550 |
| MspI | CCGG | 1 cut(s) | 1373 |
| MspR9I | CCNGG | 5 cut(s) | 296, 1515, 1563, 1762, 2094 |
| MunI | CAATTG | 1 cut(s) | 2112 |
| MvaI | CCWGG | 5 cut(s) | 296, 1515, 1563, 1762, 2094 |
| MvnI | CGCG | 2 cut(s) | 1449, 2145 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1064, 1688, 1697 |
| NdeI | CATATG | 1 cut(s) | 2014 |
| NlaIII | CATG | 4 cut(s) | 623, 1019, 1561, 1592 |
| NlaIV | GGNNCC | 2 cut(s) | 1158, 1333 |
| NmeAIII | GCCGAG | 1 cut(s) | 208 |
| NmuCI | GTSAC | 3 cut(s) | 163, 1319, 1765 |
| NruI | TCGCGA | 1 cut(s) | 1449 |
| NsbI | TGCGCA | 1 cut(s) | 2052 |
| NspI | RCATGY | 2 cut(s) | 1561, 1592 |
| OliI | CACNNNNGTG | 1 cut(s) | 1193 |
| PaqCI | CACCTGC | 1 cut(s) | 755 |
| PceI | AGGCCT | 1 cut(s) | 1077 |
| PciSI | GCTCTTC | 1 cut(s) | 18 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1905, 1992 |
| PfeI | GAWTC | 4 cut(s) | 143, 329, 1295, 1444 |
| PkrI | GCNGC | 2 cut(s) | 1398, 1795 |
| PleI | GAGTC | 1 cut(s) | 1849 |
| PpsI | GAGTC | 1 cut(s) | 1849 |
| PsiI | TTATAA | 1 cut(s) | 1460 |
| Psp1406I | AACGTT | 1 cut(s) | 2100 |
| Psp6I | CCWGG | 5 cut(s) | 294, 1513, 1561, 1760, 2092 |
| PspFI | CCCAGC | 1 cut(s) | 695 |
| PspGI | CCWGG | 5 cut(s) | 294, 1513, 1561, 1760, 2092 |
| PspN4I | GGNNCC | 2 cut(s) | 1158, 1333 |
| PspPI | GGNCC | 1 cut(s) | 1565 |
| PstI | CTGCAG | 1 cut(s) | 1798 |
| RruI | TCGCGA | 1 cut(s) | 1449 |
| RsaI | GTAC | 4 cut(s) | 1158, 1676, 1920, 1974 |
| RsaNI | GTAC | 4 cut(s) | 1157, 1675, 1919, 1973 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1020, 1193 |
| SapI | GCTCTTC | 1 cut(s) | 18 |
| SaqAI | TTAA | 8 cut(s) | 515, 1214, 1392, 1509, 1551, 1718, 1940, 2108 |
| SatI | GCNGC | 2 cut(s) | 1397, 1794 |
| Sau96I | GGNCC | 1 cut(s) | 1565 |
| SchI | GAGTC | 1 cut(s) | 1850 |
| ScrFI | CCNGG | 5 cut(s) | 296, 1515, 1563, 1762, 2094 |
| SfaNI | GCATC | 2 cut(s) | 1231, 1852 |
| SfcI | CTRYAG | 1 cut(s) | 1794 |
| SinI | GGWCC | 1 cut(s) | 1565 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1020, 1193 |
| SmlI | CTYRAG | 4 cut(s) | 575, 1213, 1550, 1781 |
| SmoI | CTYRAG | 4 cut(s) | 575, 1213, 1550, 1781 |
| SseBI | AGGCCT | 1 cut(s) | 1077 |
| SsiI | CCGC | 5 cut(s) | 176, 1058, 1821, 1831, 1869 |
| SspMI | CTAG | 6 cut(s) | 284, 1170, 1221, 1430, 1538, 1695 |
| StuI | AGGCCT | 1 cut(s) | 1077 |
| StyD4I | CCNGG | 5 cut(s) | 294, 1513, 1561, 1760, 2092 |
| StyI | CCWWGG | 1 cut(s) | 81 |
| TaaI | ACNGT | 5 cut(s) | 842, 955, 1022, 1882, 1957 |
| TaiI | ACGT | 2 cut(s) | 1128, 2103 |
| TatI | WGTACW | 1 cut(s) | 1972 |
| TfiI | GAWTC | 4 cut(s) | 143, 329, 1295, 1444 |
| Tru1I | TTAA | 8 cut(s) | 515, 1214, 1392, 1509, 1551, 1718, 1940, 2108 |
| Tru9I | TTAA | 8 cut(s) | 515, 1214, 1392, 1509, 1551, 1718, 1940, 2108 |
| TscAI | CASTG | 2 cut(s) | 172, 1195 |
| TseFI | GTSAC | 3 cut(s) | 163, 1319, 1765 |
| TseI | GCWGC | 2 cut(s) | 1396, 1793 |
| Tsp45I | GTSAC | 3 cut(s) | 163, 1319, 1765 |
| TspGWI | ACGGA | 3 cut(s) | 920, 1784, 2136 |
| TspRI | CASTG | 2 cut(s) | 172, 1195 |
| Vha464I | CTTAAG | 2 cut(s) | 1213, 1550 |
| VpaK11BI | GGWCC | 1 cut(s) | 1565 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1173 |
| XapI | RAATTY | 4 cut(s) | 1313, 1634, 1988, 2071 |
| XceI | RCATGY | 2 cut(s) | 1561, 1592 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1905, 1992 |
| XspI | CTAG | 6 cut(s) | 284, 1170, 1221, 1430, 1538, 1695 |