CRAL/TRIO, N-terminal domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 920 |
| AarI | CACCTGC | 1 cut(s) | 215 |
| Acc16I | TGCGCA | 1 cut(s) | 1512 |
| Acc36I | ACCTGC | 2 cut(s) | 215, 1051 |
| Acc65I | GGTACC | 1 cut(s) | 616 |
| AccB1I | GGYRCC | 1 cut(s) | 616 |
| AccII | CGCG | 2 cut(s) | 909, 1605 |
| AciI | CCGC | 5 cut(s) | 518, 925, 1281, 1291, 1329 |
| AclI | AACGTT | 1 cut(s) | 1560 |
| AclWI | GGATC | 3 cut(s) | 6, 1477, 1591 |
| AcsI | RAATTY | 4 cut(s) | 773, 1094, 1448, 1531 |
| AcuI | CTGAAG | 3 cut(s) | 1061, 1307, 1338 |
| AfaI | GTAC | 4 cut(s) | 618, 1136, 1380, 1434 |
| AfeI | AGCGCT | 1 cut(s) | 1159 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 635, 1222, 1388 |
| AflII | CTTAAG | 3 cut(s) | 673, 1010, 1144 |
| AflIII | ACRYGT | 1 cut(s) | 1603 |
| AgeI | ACCGGT | 1 cut(s) | 1267 |
| AgsI | TTSAA | 6 cut(s) | 197, 326, 667, 935, 1370, 1490 |
| AjnI | CCWGG | 4 cut(s) | 973, 1021, 1220, 1552 |
| AleI | CACNNNNGTG | 1 cut(s) | 653 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1254, 1286 |
| AluBI | AGCT | 9 cut(s) | 7, 19, 155, 284, 580, 856, 961, 1042, 1253 |
| AluI | AGCT | 9 cut(s) | 7, 19, 155, 284, 580, 856, 961, 1042, 1253 |
| Alw26I | GTCTC | 1 cut(s) | 356 |
| AlwI | GGATC | 3 cut(s) | 6, 1477, 1591 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1364 |
| Aor51HI | AGCGCT | 1 cut(s) | 1159 |
| AoxI | GGCC | 1 cut(s) | 535 |
| ApeKI | GCWGC | 2 cut(s) | 856, 1253 |
| ApoI | RAATTY | 4 cut(s) | 773, 1094, 1448, 1531 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 819, 851 |
| AsiGI | ACCGGT | 1 cut(s) | 1267 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1365, 1452 |
| Asp718I | GGTACC | 1 cut(s) | 616 |
| AspLEI | GCGC | 2 cut(s) | 1160, 1513 |
| AspS9I | GGNCC | 2 cut(s) | 1025, 1270 |
| AsuHPI | GGTGA | 1 cut(s) | 791 |
| AvaII | GGWCC | 2 cut(s) | 1025, 1270 |
| BanI | GGYRCC | 1 cut(s) | 616 |
| BbsI | GAAGAC | 2 cut(s) | 510, 1198 |
| BbvI | GCAGC | 2 cut(s) | 843, 1240 |
| BccI | CCATC | 1 cut(s) | 934 |
| BceAI | ACGGC | 1 cut(s) | 496 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 497, 531 |
| BciT130I | CCWGG | 4 cut(s) | 975, 1023, 1222, 1554 |
| BciVI | GTATCC | 1 cut(s) | 1065 |
| BclI | TGATCA | 1 cut(s) | 565 |
| BcoDI | GTCTC | 1 cut(s) | 356 |
| BfaI | CTAG | 5 cut(s) | 630, 681, 890, 998, 1155 |
| BfmI | CTRYAG | 1 cut(s) | 1254 |
| BfoI | RGCGCY | 1 cut(s) | 1161 |
| BfrI | CTTAAG | 3 cut(s) | 673, 1010, 1144 |
| BfuAI | ACCTGC | 2 cut(s) | 215, 1051 |
| BfuI | GTATCC | 1 cut(s) | 1065 |
| BisI | GCNGC | 2 cut(s) | 857, 1254 |
| BlsI | GCNGC | 2 cut(s) | 858, 1255 |
| Bme1390I | CCNGG | 4 cut(s) | 975, 1023, 1222, 1554 |
| Bme18I | GGWCC | 2 cut(s) | 1025, 1270 |
| BmgT120I | GGNCC | 2 cut(s) | 1025, 1270 |
| BmiI | GGNNCC | 2 cut(s) | 618, 793 |
| BmrFI | CCNGG | 4 cut(s) | 975, 1023, 1222, 1554 |
| BmsI | GCATC | 2 cut(s) | 691, 1312 |
| BpiI | GAAGAC | 2 cut(s) | 510, 1198 |
| BpuEI | CTTGAG | 2 cut(s) | 56, 1226 |
| Bsa29I | ATCGAT | 2 cut(s) | 591, 1615 |
| BsaJI | CCNNGG | 1 cut(s) | 1221 |
| BsaWI | WCCGGW | 2 cut(s) | 832, 1267 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1492, 1522 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 635, 1222, 1388 |
| Bse118I | RCCGGY | 1 cut(s) | 1267 |
| BseBI | CCWGG | 4 cut(s) | 975, 1023, 1222, 1554 |
| BseCI | ATCGAT | 2 cut(s) | 591, 1615 |
| BseDI | CCNNGG | 1 cut(s) | 1221 |
| BseGI | GGATG | 3 cut(s) | 772, 829, 871 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 635, 1222, 1388 |
| BseMII | CTCAG | 2 cut(s) | 147, 276 |
| BseRI | GAGGAG | 2 cut(s) | 248, 251 |
| BseXI | GCAGC | 2 cut(s) | 843, 1240 |
| Bsh1236I | CGCG | 2 cut(s) | 909, 1605 |
| BshFI | GGCC | 1 cut(s) | 537 |
| BshNI | GGYRCC | 1 cut(s) | 616 |
| BshTI | ACCGGT | 1 cut(s) | 1267 |
| BshVI | ATCGAT | 2 cut(s) | 591, 1615 |
| BsiSI | CCGG | 2 cut(s) | 833, 1268 |
| BslFI | GGGAC | 1 cut(s) | 907 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 635, 1222, 1388 |
| BsmAI | GTCTC | 1 cut(s) | 356 |
| BsmBI | CGTCTC | 1 cut(s) | 356 |
| BsmFI | GGGAC | 1 cut(s) | 907 |
| BsnI | GGCC | 1 cut(s) | 537 |
| Bsp143I | GATC | 7 cut(s) | 11, 565, 759, 784, 1006, 1469, 1583 |
| Bsp68I | TCGCGA | 1 cut(s) | 909 |
| BspACI | CCGC | 5 cut(s) | 518, 925, 1281, 1291, 1329 |
| BspANI | GGCC | 1 cut(s) | 537 |
| BspCNI | CTCAG | 2 cut(s) | 148, 277 |
| BspDI | ATCGAT | 2 cut(s) | 591, 1615 |
| BspFNI | CGCG | 2 cut(s) | 909, 1605 |
| BspLI | GGNNCC | 2 cut(s) | 618, 793 |
| BspMAI | CTGCAG | 1 cut(s) | 1258 |
| BspMI | ACCTGC | 2 cut(s) | 215, 1051 |
| BspPI | GGATC | 3 cut(s) | 6, 1477, 1591 |
| BspT107I | GGYRCC | 1 cut(s) | 616 |
| BspTI | CTTAAG | 3 cut(s) | 673, 1010, 1144 |
| BsrFI | RCCGGY | 1 cut(s) | 1267 |
| BssAI | RCCGGY | 1 cut(s) | 1267 |
| BssECI | CCNNGG | 1 cut(s) | 1221 |
| BssMI | GATC | 7 cut(s) | 11, 565, 759, 784, 1006, 1469, 1583 |
| Bst2UI | CCWGG | 4 cut(s) | 975, 1023, 1222, 1554 |
| Bst4CI | ACNGT | 4 cut(s) | 415, 1342, 1366, 1417 |
| Bst6I | CTCTTC | 2 cut(s) | 183, 462 |
| BstAFI | CTTAAG | 3 cut(s) | 673, 1010, 1144 |
| BstC8I | GCNNGC | 2 cut(s) | 1213, 1283 |
| BstDEI | CTNAG | 6 cut(s) | 8, 156, 285, 435, 1032, 1505 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 633 |
| BstF5I | GGATG | 3 cut(s) | 772, 829, 871 |
| BstFNI | CGCG | 2 cut(s) | 909, 1605 |
| BstH2I | RGCGCY | 1 cut(s) | 1161 |
| BstHHI | GCGC | 2 cut(s) | 1160, 1513 |
| BstKTI | GATC | 7 cut(s) | 14, 568, 762, 787, 1009, 1472, 1586 |
| BstMAI | GTCTC | 1 cut(s) | 356 |
| BstMBI | GATC | 7 cut(s) | 11, 565, 759, 784, 1006, 1469, 1583 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 524, 1148, 1157, 1510 |
| BstNI | CCWGG | 4 cut(s) | 975, 1023, 1222, 1554 |
| BstNSI | RCATGY | 2 cut(s) | 1021, 1052 |
| BstSCI | CCNGG | 4 cut(s) | 973, 1021, 1220, 1552 |
| BstSFI | CTRYAG | 1 cut(s) | 1254 |
| BstUI | CGCG | 2 cut(s) | 909, 1605 |
| BstV1I | GCAGC | 2 cut(s) | 843, 1240 |
| BstV2I | GAAGAC | 2 cut(s) | 510, 1198 |
| BstX2I | RGATCY | 1 cut(s) | 11 |
| BstYI | RGATCY | 1 cut(s) | 11 |
| Bsu15I | ATCGAT | 2 cut(s) | 591, 1615 |
| BsuI | GTATCC | 1 cut(s) | 1065 |
| BsuRI | GGCC | 1 cut(s) | 537 |
| BsuTUI | ATCGAT | 2 cut(s) | 591, 1615 |
| BtsCI | GGATG | 3 cut(s) | 772, 829, 871 |
| BtsIMutI | CAGTG | 1 cut(s) | 648 |
| BtuMI | TCGCGA | 1 cut(s) | 909 |
| BveI | ACCTGC | 2 cut(s) | 215, 1051 |
| Cac8I | GCNNGC | 2 cut(s) | 1213, 1283 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1364 |
| CfoI | GCGC | 2 cut(s) | 1160, 1513 |
| Cfr10I | RCCGGY | 1 cut(s) | 1267 |
| Cfr13I | GGNCC | 2 cut(s) | 1025, 1270 |
| ClaI | ATCGAT | 2 cut(s) | 591, 1615 |
| Csp6I | GTAC | 4 cut(s) | 617, 1135, 1379, 1433 |
| CspAI | ACCGGT | 1 cut(s) | 1267 |
| CviAII | CATG | 3 cut(s) | 80, 1018, 1049 |
| CviQI | GTAC | 4 cut(s) | 617, 1135, 1379, 1433 |
| DdeI | CTNAG | 6 cut(s) | 8, 156, 285, 435, 1032, 1505 |
| DpnI | GATC | 7 cut(s) | 13, 567, 761, 786, 1008, 1471, 1585 |
| DpnII | GATC | 7 cut(s) | 11, 565, 759, 784, 1006, 1469, 1583 |
| DraI | TTTAAA | 1 cut(s) | 1401 |
| Eam1104I | CTCTTC | 2 cut(s) | 183, 462 |
| EarI | CTCTTC | 2 cut(s) | 183, 462 |
| EciI | GGCGGA | 1 cut(s) | 940 |
| Eco147I | AGGCCT | 1 cut(s) | 537 |
| Eco32I | GATATC | 2 cut(s) | 342, 601 |
| Eco47I | GGWCC | 2 cut(s) | 1025, 1270 |
| Eco47III | AGCGCT | 1 cut(s) | 1159 |
| Eco57I | CTGAAG | 3 cut(s) | 1061, 1307, 1338 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 633 |
| EcoRI | GAATTC | 1 cut(s) | 1448 |
| EcoRII | CCWGG | 4 cut(s) | 973, 1021, 1220, 1552 |
| EcoRV | GATATC | 2 cut(s) | 342, 601 |
| Esp3I | CGTCTC | 1 cut(s) | 356 |
| FaeI | CATG | 3 cut(s) | 83, 1021, 1052 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 950, 982 |
| FaqI | GGGAC | 1 cut(s) | 907 |
| FatI | CATG | 3 cut(s) | 79, 1017, 1048 |
| FauI | CCCGC | 2 cut(s) | 1274, 1284 |
| FauNDI | CATATG | 1 cut(s) | 1474 |
| FbaI | TGATCA | 1 cut(s) | 565 |
| Fnu4HI | GCNGC | 2 cut(s) | 857, 1254 |
| FokI | GGATG | 3 cut(s) | 779, 816, 878 |
| Fsp4HI | GCNGC | 2 cut(s) | 857, 1254 |
| FspBI | CTAG | 5 cut(s) | 630, 681, 890, 998, 1155 |
| FspI | TGCGCA | 1 cut(s) | 1512 |
| GlaI | GCGC | 2 cut(s) | 1159, 1512 |
| GluI | GCNGC | 2 cut(s) | 857, 1254 |
| HaeII | RGCGCY | 1 cut(s) | 1161 |
| HaeIII | GGCC | 1 cut(s) | 537 |
| HapII | CCGG | 2 cut(s) | 833, 1268 |
| HhaI | GCGC | 2 cut(s) | 1160, 1513 |
| Hin1II | CATG | 3 cut(s) | 83, 1021, 1052 |
| Hin6I | GCGC | 2 cut(s) | 1158, 1511 |
| HinP1I | GCGC | 2 cut(s) | 1158, 1511 |
| HindIII | AAGCTT | 1 cut(s) | 578 |
| HinfI | GANTC | 2 cut(s) | 755, 904 |
| HpaII | CCGG | 2 cut(s) | 833, 1268 |
| HphI | GGTGA | 1 cut(s) | 791 |
| Hpy166II | GTNNAC | 1 cut(s) | 1435 |
| Hpy188I | TCNGA | 4 cut(s) | 178, 957, 1360, 1529 |
| Hpy8I | GTNNAC | 1 cut(s) | 1435 |
| HpyCH4III | ACNGT | 4 cut(s) | 415, 1342, 1366, 1417 |
| HpyCH4IV | ACGT | 2 cut(s) | 585, 1560 |
| HpyCH4V | TGCA | 2 cut(s) | 1103, 1256 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 524, 1148, 1157, 1510 |
| HpyF3I | CTNAG | 6 cut(s) | 8, 156, 285, 435, 1032, 1505 |
| HpySE526I | ACGT | 2 cut(s) | 585, 1560 |
| Hsp92II | CATG | 3 cut(s) | 83, 1021, 1052 |
| HspAI | GCGC | 2 cut(s) | 1158, 1511 |
| KpnI | GGTACC | 1 cut(s) | 620 |
| Ksp22I | TGATCA | 1 cut(s) | 565 |
| Kzo9I | GATC | 7 cut(s) | 11, 565, 759, 784, 1006, 1469, 1583 |
| LmnI | GCTCC | 3 cut(s) | 4, 76, 732 |
| Lsp1109I | GCAGC | 2 cut(s) | 843, 1240 |
| LweI | GCATC | 2 cut(s) | 691, 1312 |
| MaeI | CTAG | 5 cut(s) | 630, 681, 890, 998, 1155 |
| MaeII | ACGT | 2 cut(s) | 585, 1560 |
| MaeIII | GTNAC | 2 cut(s) | 779, 1225 |
| MalI | GATC | 7 cut(s) | 13, 567, 761, 786, 1008, 1471, 1585 |
| MboI | GATC | 7 cut(s) | 11, 565, 759, 784, 1006, 1469, 1583 |
| MfeI | CAATTG | 1 cut(s) | 1572 |
| MflI | RGATCY | 1 cut(s) | 11 |
| MluI | ACGCGT | 1 cut(s) | 1603 |
| MmeI | TCCRAC | 1 cut(s) | 1481 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1365, 1452 |
| MseI | TTAA | 8 cut(s) | 674, 852, 969, 1011, 1145, 1178, 1400, 1568 |
| MslI | CAYNNNNRTG | 1 cut(s) | 653 |
| MspCI | CTTAAG | 3 cut(s) | 673, 1010, 1144 |
| MspI | CCGG | 2 cut(s) | 833, 1268 |
| MspR9I | CCNGG | 4 cut(s) | 975, 1023, 1222, 1554 |
| MunI | CAATTG | 1 cut(s) | 1572 |
| MvaI | CCWGG | 4 cut(s) | 975, 1023, 1222, 1554 |
| MvnI | CGCG | 2 cut(s) | 909, 1605 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 524, 1148, 1157, 1510 |
| NdeI | CATATG | 1 cut(s) | 1474 |
| NdeII | GATC | 7 cut(s) | 11, 565, 759, 784, 1006, 1469, 1583 |
| NlaIII | CATG | 3 cut(s) | 83, 1021, 1052 |
| NlaIV | GGNNCC | 2 cut(s) | 618, 793 |
| NmuCI | GTSAC | 2 cut(s) | 779, 1225 |
| NruI | TCGCGA | 1 cut(s) | 909 |
| NsbI | TGCGCA | 1 cut(s) | 1512 |
| NspI | RCATGY | 2 cut(s) | 1021, 1052 |
| OliI | CACNNNNGTG | 1 cut(s) | 653 |
| PaqCI | CACCTGC | 1 cut(s) | 215 |
| PceI | AGGCCT | 1 cut(s) | 537 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1365, 1452 |
| PfeI | GAWTC | 2 cut(s) | 755, 904 |
| PinAI | ACCGGT | 1 cut(s) | 1267 |
| PkrI | GCNGC | 2 cut(s) | 858, 1255 |
| PsiI | TTATAA | 1 cut(s) | 920 |
| Psp1406I | AACGTT | 1 cut(s) | 1560 |
| Psp6I | CCWGG | 4 cut(s) | 973, 1021, 1220, 1552 |
| PspGI | CCWGG | 4 cut(s) | 973, 1021, 1220, 1552 |
| PspN4I | GGNNCC | 2 cut(s) | 618, 793 |
| PspPI | GGNCC | 2 cut(s) | 1025, 1270 |
| PstI | CTGCAG | 1 cut(s) | 1258 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1364 |
| PsuI | RGATCY | 1 cut(s) | 11 |
| RruI | TCGCGA | 1 cut(s) | 909 |
| RsaI | GTAC | 4 cut(s) | 618, 1136, 1380, 1434 |
| RsaNI | GTAC | 4 cut(s) | 617, 1135, 1379, 1433 |
| RseI | CAYNNNNRTG | 1 cut(s) | 653 |
| SaqAI | TTAA | 8 cut(s) | 674, 852, 969, 1011, 1145, 1178, 1400, 1568 |
| SatI | GCNGC | 2 cut(s) | 857, 1254 |
| Sau3AI | GATC | 7 cut(s) | 11, 565, 759, 784, 1006, 1469, 1583 |
| Sau96I | GGNCC | 2 cut(s) | 1025, 1270 |
| ScrFI | CCNGG | 4 cut(s) | 975, 1023, 1222, 1554 |
| SfaNI | GCATC | 2 cut(s) | 691, 1312 |
| SfcI | CTRYAG | 1 cut(s) | 1254 |
| SinI | GGWCC | 2 cut(s) | 1025, 1270 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 653 |
| SmlI | CTYRAG | 5 cut(s) | 35, 673, 1010, 1144, 1241 |
| SmoI | CTYRAG | 5 cut(s) | 35, 673, 1010, 1144, 1241 |
| SseBI | AGGCCT | 1 cut(s) | 537 |
| SsiI | CCGC | 5 cut(s) | 518, 925, 1281, 1291, 1329 |
| SspMI | CTAG | 5 cut(s) | 630, 681, 890, 998, 1155 |
| StuI | AGGCCT | 1 cut(s) | 537 |
| StyD4I | CCNGG | 4 cut(s) | 973, 1021, 1220, 1552 |
| TaaI | ACNGT | 4 cut(s) | 415, 1342, 1366, 1417 |
| TaiI | ACGT | 2 cut(s) | 588, 1563 |
| TatI | WGTACW | 1 cut(s) | 1432 |
| TfiI | GAWTC | 2 cut(s) | 755, 904 |
| Tru1I | TTAA | 8 cut(s) | 674, 852, 969, 1011, 1145, 1178, 1400, 1568 |
| Tru9I | TTAA | 8 cut(s) | 674, 852, 969, 1011, 1145, 1178, 1400, 1568 |
| TscAI | CASTG | 1 cut(s) | 655 |
| TseFI | GTSAC | 2 cut(s) | 779, 1225 |
| TseI | GCWGC | 2 cut(s) | 856, 1253 |
| Tsp45I | GTSAC | 2 cut(s) | 779, 1225 |
| TspDTI | ATGAA | 7 cut(s) | 290, 408, 783, 821, 882, 1105, 1607 |
| TspGWI | ACGGA | 1 cut(s) | 1596 |
| TspRI | CASTG | 1 cut(s) | 655 |
| Vha464I | CTTAAG | 3 cut(s) | 673, 1010, 1144 |
| VpaK11BI | GGWCC | 2 cut(s) | 1025, 1270 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 633 |
| XapI | RAATTY | 4 cut(s) | 773, 1094, 1448, 1531 |
| XceI | RCATGY | 2 cut(s) | 1021, 1052 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1365, 1452 |
| XspI | CTAG | 5 cut(s) | 630, 681, 890, 998, 1155 |