MD05G1228200.v1.1

CRAL/TRIO, N-terminal domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
36221775 .. 36223695
1921 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1228200.v1.1.491

Sequence Viewer

Length: 1641 bp
ATGGAGCTGAGATCCAAGCTCGAAAACGCAATACTTGAGAACAAGTTGTTTGAGGGAAATAAGAAGAAAATGGTGGAGCATGAGAAGGAAAAGGTATTGGAGAAGGAATGTGGAGAGAAAGAGAAAGTAATAGAGAGTGAGCCTGTGAAGGAAGCTGAGAAAGAGAAAGAAAGTTCCGAGAAAGTAGAAGAGGTTGAAGAAAAGGGAAAGATATGTGAGAAGGCAGGTGGGGAGGAGGAGAAAATCAATGAGGGGAAAGGAGAGGAAAATGCTATGAAAGAAGCTGAGAAAGAGAAGGATAGTTTGACGAAAGTAGAAGAAATTGAAGAAAAGGGAAAGATATCGAAGAAGGAAGGTGGAGAGACGAAGAAAATAAATGAGGGGAAAGGAGATGAAATAGTCGTGGAAAAAACTGTGAAGGAGAAGGAAGGCTCTAAGGAGATAGAAGAAAAGTTAGTAGTAAAAGAAGAGAAACAATACGGCGATAAACCTTCCAAGCAAGAAGACGAGGAAAATGCGGAAAAGGCAGAAGAAGGCCTGAAAGAGAACAACAATGAGGCTATTGATCAGGATAGAAAGCTTGACGTTATCGATAAGGATATCACAATTTGGGGGGTACCCTTATTGCCTAGTAAAGGAGATAGTGGCACTGATGTGATACTATTGAAGTTCTTAAGGGCTAGGGAGTTCGATGTCTATGATGCTTTCGAGATGTTGAGGAATACGCTCCAATGGAGGAAGGACAACAAGGTGGATTCGATCTTGGATGAAGAATTTGGTGACGATCTTGGTTCCATAGGGTGTATGAATGGTGTGGGTCGTGAAGGACATCCGGTTTGTTATAGTAATTTTAAGCTGCTTGGGGATGAAGGGGTGTATGACAAAATACTAGGGACTGAAAAGAATCGCGATATGTTTATAAGGCGGAGGGTTCAACTGATGGAGAAAGCAATTCAGAAGCTCGACTTTAAGCCTGGTGGAGTGTCCTCAATCCTCCTAGTCAATGATCTTAAGGACATGCCTGGTCCTTCTAAGAAAGAGCTTCGACATGCTACAAAGCAGGTTGTCGGGATACTTCAGGACAACTATCCTGAATTTGTTGCAAGAAATATCTTCATCAATGTTCCATTCTGGTACTATGCCTTAAGTGCTACTAGCGCTGTCCTATTGCCTTTCTTAACTCCAAGAACCAACAGCAAAGTTGTCTTCGCACGCCCGTCCAGGGTCACAGAAATCTTGCTCAAGTATATAGCTGCAGAGGAACTACCGGTCCATTATGGCGGGCTGAAGCGGGAAGATGAGTTTGATTTCTCAACTGAAGATGCTTCCGCAGAGATTACTGTTTATCAATCATCATCAGAAACTGTTCAAATCCCTGTACCAGAGGCAGGAACAACTTTAAAGTGGGAAATTACCGTGTTGGGTTGGGAAGTACACTACAAGGAAGAATTCTTTCCAACTGATGAGGGATCATATGGCATTATCATTCAAAAGGGCAGGAGGCTTAGTGCGCAAGAGGGTTCTCTCCGAAATTCTTTCTCGAACAACGAACCTGGAAACGTTCTTTTAACAATTGAGAACGGATCATTGATGAAGAAGAAACGCGTTTGTTATCGATACAAGGTCAAGAATGGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

547

Amino Acids

62.01

Weight (kDa)

5.1

Isoelectric Point (pI)

49.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO_N PF03765 191 - 241 6.9e-09 CRAL/TRIO, N-terminal domain
CRAL_TRIO PF00650 266 - 428 5.8e-22 CRAL/TRIO domain
GOLD_PATL1_C PF25099 451 - 533 2.1e-30 Patellin-1-like, C-terminal GOLD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 920
AarI CACCTGC 1 cut(s) 215
Acc16I TGCGCA 1 cut(s) 1512
Acc36I ACCTGC 2 cut(s) 215, 1051
Acc65I GGTACC 1 cut(s) 616
AccB1I GGYRCC 1 cut(s) 616
AccII CGCG 2 cut(s) 909, 1605
AciI CCGC 5 cut(s) 518, 925, 1281, 1291, 1329
AclI AACGTT 1 cut(s) 1560
AclWI GGATC 3 cut(s) 6, 1477, 1591
AcsI RAATTY 4 cut(s) 773, 1094, 1448, 1531
AcuI CTGAAG 3 cut(s) 1061, 1307, 1338
AfaI GTAC 4 cut(s) 618, 1136, 1380, 1434
AfeI AGCGCT 1 cut(s) 1159
AfiI CCNNNNNNNGG 3 cut(s) 635, 1222, 1388
AflII CTTAAG 3 cut(s) 673, 1010, 1144
AflIII ACRYGT 1 cut(s) 1603
AgeI ACCGGT 1 cut(s) 1267
AgsI TTSAA 6 cut(s) 197, 326, 667, 935, 1370, 1490
AjnI CCWGG 4 cut(s) 973, 1021, 1220, 1552
AleI CACNNNNGTG 1 cut(s) 653
AloI GAACNNNNNNTCC 2 cut(s) 1254, 1286
AluBI AGCT 9 cut(s) 7, 19, 155, 284, 580, 856, 961, 1042, 1253
AluI AGCT 9 cut(s) 7, 19, 155, 284, 580, 856, 961, 1042, 1253
Alw26I GTCTC 1 cut(s) 356
AlwI GGATC 3 cut(s) 6, 1477, 1591
AlwNI CAGNNNCTG 1 cut(s) 1364
Aor51HI AGCGCT 1 cut(s) 1159
AoxI GGCC 1 cut(s) 535
ApeKI GCWGC 2 cut(s) 856, 1253
ApoI RAATTY 4 cut(s) 773, 1094, 1448, 1531
ArsI GACNNNNNNTTYG 2 cut(s) 819, 851
AsiGI ACCGGT 1 cut(s) 1267
Asp700I GAANNNNTTC 2 cut(s) 1365, 1452
Asp718I GGTACC 1 cut(s) 616
AspLEI GCGC 2 cut(s) 1160, 1513
AspS9I GGNCC 2 cut(s) 1025, 1270
AsuHPI GGTGA 1 cut(s) 791
AvaII GGWCC 2 cut(s) 1025, 1270
BanI GGYRCC 1 cut(s) 616
BbsI GAAGAC 2 cut(s) 510, 1198
BbvI GCAGC 2 cut(s) 843, 1240
BccI CCATC 1 cut(s) 934
BceAI ACGGC 1 cut(s) 496
BcgI CGANNNNNNTGC 2 cut(s) 497, 531
BciT130I CCWGG 4 cut(s) 975, 1023, 1222, 1554
BciVI GTATCC 1 cut(s) 1065
BclI TGATCA 1 cut(s) 565
BcoDI GTCTC 1 cut(s) 356
BfaI CTAG 5 cut(s) 630, 681, 890, 998, 1155
BfmI CTRYAG 1 cut(s) 1254
BfoI RGCGCY 1 cut(s) 1161
BfrI CTTAAG 3 cut(s) 673, 1010, 1144
BfuAI ACCTGC 2 cut(s) 215, 1051
BfuI GTATCC 1 cut(s) 1065
BisI GCNGC 2 cut(s) 857, 1254
BlsI GCNGC 2 cut(s) 858, 1255
Bme1390I CCNGG 4 cut(s) 975, 1023, 1222, 1554
Bme18I GGWCC 2 cut(s) 1025, 1270
BmgT120I GGNCC 2 cut(s) 1025, 1270
BmiI GGNNCC 2 cut(s) 618, 793
BmrFI CCNGG 4 cut(s) 975, 1023, 1222, 1554
BmsI GCATC 2 cut(s) 691, 1312
BpiI GAAGAC 2 cut(s) 510, 1198
BpuEI CTTGAG 2 cut(s) 56, 1226
Bsa29I ATCGAT 2 cut(s) 591, 1615
BsaJI CCNNGG 1 cut(s) 1221
BsaWI WCCGGW 2 cut(s) 832, 1267
BsaXI ACNNNNNCTCC 2 cut(s) 1492, 1522
Bsc4I CCNNNNNNNGG 3 cut(s) 635, 1222, 1388
Bse118I RCCGGY 1 cut(s) 1267
BseBI CCWGG 4 cut(s) 975, 1023, 1222, 1554
BseCI ATCGAT 2 cut(s) 591, 1615
BseDI CCNNGG 1 cut(s) 1221
BseGI GGATG 3 cut(s) 772, 829, 871
BseLI CCNNNNNNNGG 3 cut(s) 635, 1222, 1388
BseMII CTCAG 2 cut(s) 147, 276
BseRI GAGGAG 2 cut(s) 248, 251
BseXI GCAGC 2 cut(s) 843, 1240
Bsh1236I CGCG 2 cut(s) 909, 1605
BshFI GGCC 1 cut(s) 537
BshNI GGYRCC 1 cut(s) 616
BshTI ACCGGT 1 cut(s) 1267
BshVI ATCGAT 2 cut(s) 591, 1615
BsiSI CCGG 2 cut(s) 833, 1268
BslFI GGGAC 1 cut(s) 907
BslI CCNNNNNNNGG 3 cut(s) 635, 1222, 1388
BsmAI GTCTC 1 cut(s) 356
BsmBI CGTCTC 1 cut(s) 356
BsmFI GGGAC 1 cut(s) 907
BsnI GGCC 1 cut(s) 537
Bsp143I GATC 7 cut(s) 11, 565, 759, 784, 1006, 1469, 1583
Bsp68I TCGCGA 1 cut(s) 909
BspACI CCGC 5 cut(s) 518, 925, 1281, 1291, 1329
BspANI GGCC 1 cut(s) 537
BspCNI CTCAG 2 cut(s) 148, 277
BspDI ATCGAT 2 cut(s) 591, 1615
BspFNI CGCG 2 cut(s) 909, 1605
BspLI GGNNCC 2 cut(s) 618, 793
BspMAI CTGCAG 1 cut(s) 1258
BspMI ACCTGC 2 cut(s) 215, 1051
BspPI GGATC 3 cut(s) 6, 1477, 1591
BspT107I GGYRCC 1 cut(s) 616
BspTI CTTAAG 3 cut(s) 673, 1010, 1144
BsrFI RCCGGY 1 cut(s) 1267
BssAI RCCGGY 1 cut(s) 1267
BssECI CCNNGG 1 cut(s) 1221
BssMI GATC 7 cut(s) 11, 565, 759, 784, 1006, 1469, 1583
Bst2UI CCWGG 4 cut(s) 975, 1023, 1222, 1554
Bst4CI ACNGT 4 cut(s) 415, 1342, 1366, 1417
Bst6I CTCTTC 2 cut(s) 183, 462
BstAFI CTTAAG 3 cut(s) 673, 1010, 1144
BstC8I GCNNGC 2 cut(s) 1213, 1283
BstDEI CTNAG 6 cut(s) 8, 156, 285, 435, 1032, 1505
BstENI CCTNNNNNAGG 1 cut(s) 633
BstF5I GGATG 3 cut(s) 772, 829, 871
BstFNI CGCG 2 cut(s) 909, 1605
BstH2I RGCGCY 1 cut(s) 1161
BstHHI GCGC 2 cut(s) 1160, 1513
BstKTI GATC 7 cut(s) 14, 568, 762, 787, 1009, 1472, 1586
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 7 cut(s) 11, 565, 759, 784, 1006, 1469, 1583
BstMWI GCNNNNNNNGC 4 cut(s) 524, 1148, 1157, 1510
BstNI CCWGG 4 cut(s) 975, 1023, 1222, 1554
BstNSI RCATGY 2 cut(s) 1021, 1052
BstSCI CCNGG 4 cut(s) 973, 1021, 1220, 1552
BstSFI CTRYAG 1 cut(s) 1254
BstUI CGCG 2 cut(s) 909, 1605
BstV1I GCAGC 2 cut(s) 843, 1240
BstV2I GAAGAC 2 cut(s) 510, 1198
BstX2I RGATCY 1 cut(s) 11
BstYI RGATCY 1 cut(s) 11
Bsu15I ATCGAT 2 cut(s) 591, 1615
BsuI GTATCC 1 cut(s) 1065
BsuRI GGCC 1 cut(s) 537
BsuTUI ATCGAT 2 cut(s) 591, 1615
BtsCI GGATG 3 cut(s) 772, 829, 871
BtsIMutI CAGTG 1 cut(s) 648
BtuMI TCGCGA 1 cut(s) 909
BveI ACCTGC 2 cut(s) 215, 1051
Cac8I GCNNGC 2 cut(s) 1213, 1283
CaiI CAGNNNCTG 1 cut(s) 1364
CfoI GCGC 2 cut(s) 1160, 1513
Cfr10I RCCGGY 1 cut(s) 1267
Cfr13I GGNCC 2 cut(s) 1025, 1270
ClaI ATCGAT 2 cut(s) 591, 1615
Csp6I GTAC 4 cut(s) 617, 1135, 1379, 1433
CspAI ACCGGT 1 cut(s) 1267
CviAII CATG 3 cut(s) 80, 1018, 1049
CviQI GTAC 4 cut(s) 617, 1135, 1379, 1433
DdeI CTNAG 6 cut(s) 8, 156, 285, 435, 1032, 1505
DpnI GATC 7 cut(s) 13, 567, 761, 786, 1008, 1471, 1585
DpnII GATC 7 cut(s) 11, 565, 759, 784, 1006, 1469, 1583
DraI TTTAAA 1 cut(s) 1401
Eam1104I CTCTTC 2 cut(s) 183, 462
EarI CTCTTC 2 cut(s) 183, 462
EciI GGCGGA 1 cut(s) 940
Eco147I AGGCCT 1 cut(s) 537
Eco32I GATATC 2 cut(s) 342, 601
Eco47I GGWCC 2 cut(s) 1025, 1270
Eco47III AGCGCT 1 cut(s) 1159
Eco57I CTGAAG 3 cut(s) 1061, 1307, 1338
EcoNI CCTNNNNNAGG 1 cut(s) 633
EcoRI GAATTC 1 cut(s) 1448
EcoRII CCWGG 4 cut(s) 973, 1021, 1220, 1552
EcoRV GATATC 2 cut(s) 342, 601
Esp3I CGTCTC 1 cut(s) 356
FaeI CATG 3 cut(s) 83, 1021, 1052
FalI AAGNNNNNCTT 2 cut(s) 950, 982
FaqI GGGAC 1 cut(s) 907
FatI CATG 3 cut(s) 79, 1017, 1048
FauI CCCGC 2 cut(s) 1274, 1284
FauNDI CATATG 1 cut(s) 1474
FbaI TGATCA 1 cut(s) 565
Fnu4HI GCNGC 2 cut(s) 857, 1254
FokI GGATG 3 cut(s) 779, 816, 878
Fsp4HI GCNGC 2 cut(s) 857, 1254
FspBI CTAG 5 cut(s) 630, 681, 890, 998, 1155
FspI TGCGCA 1 cut(s) 1512
GlaI GCGC 2 cut(s) 1159, 1512
GluI GCNGC 2 cut(s) 857, 1254
HaeII RGCGCY 1 cut(s) 1161
HaeIII GGCC 1 cut(s) 537
HapII CCGG 2 cut(s) 833, 1268
HhaI GCGC 2 cut(s) 1160, 1513
Hin1II CATG 3 cut(s) 83, 1021, 1052
Hin6I GCGC 2 cut(s) 1158, 1511
HinP1I GCGC 2 cut(s) 1158, 1511
HindIII AAGCTT 1 cut(s) 578
HinfI GANTC 2 cut(s) 755, 904
HpaII CCGG 2 cut(s) 833, 1268
HphI GGTGA 1 cut(s) 791
Hpy166II GTNNAC 1 cut(s) 1435
Hpy188I TCNGA 4 cut(s) 178, 957, 1360, 1529
Hpy8I GTNNAC 1 cut(s) 1435
HpyCH4III ACNGT 4 cut(s) 415, 1342, 1366, 1417
HpyCH4IV ACGT 2 cut(s) 585, 1560
HpyCH4V TGCA 2 cut(s) 1103, 1256
HpyF10VI GCNNNNNNNGC 4 cut(s) 524, 1148, 1157, 1510
HpyF3I CTNAG 6 cut(s) 8, 156, 285, 435, 1032, 1505
HpySE526I ACGT 2 cut(s) 585, 1560
Hsp92II CATG 3 cut(s) 83, 1021, 1052
HspAI GCGC 2 cut(s) 1158, 1511
KpnI GGTACC 1 cut(s) 620
Ksp22I TGATCA 1 cut(s) 565
Kzo9I GATC 7 cut(s) 11, 565, 759, 784, 1006, 1469, 1583
LmnI GCTCC 3 cut(s) 4, 76, 732
Lsp1109I GCAGC 2 cut(s) 843, 1240
LweI GCATC 2 cut(s) 691, 1312
MaeI CTAG 5 cut(s) 630, 681, 890, 998, 1155
MaeII ACGT 2 cut(s) 585, 1560
MaeIII GTNAC 2 cut(s) 779, 1225
MalI GATC 7 cut(s) 13, 567, 761, 786, 1008, 1471, 1585
MboI GATC 7 cut(s) 11, 565, 759, 784, 1006, 1469, 1583
MfeI CAATTG 1 cut(s) 1572
MflI RGATCY 1 cut(s) 11
MluI ACGCGT 1 cut(s) 1603
MmeI TCCRAC 1 cut(s) 1481
MroXI GAANNNNTTC 2 cut(s) 1365, 1452
MseI TTAA 8 cut(s) 674, 852, 969, 1011, 1145, 1178, 1400, 1568
MslI CAYNNNNRTG 1 cut(s) 653
MspCI CTTAAG 3 cut(s) 673, 1010, 1144
MspI CCGG 2 cut(s) 833, 1268
MspR9I CCNGG 4 cut(s) 975, 1023, 1222, 1554
MunI CAATTG 1 cut(s) 1572
MvaI CCWGG 4 cut(s) 975, 1023, 1222, 1554
MvnI CGCG 2 cut(s) 909, 1605
MwoI GCNNNNNNNGC 4 cut(s) 524, 1148, 1157, 1510
NdeI CATATG 1 cut(s) 1474
NdeII GATC 7 cut(s) 11, 565, 759, 784, 1006, 1469, 1583
NlaIII CATG 3 cut(s) 83, 1021, 1052
NlaIV GGNNCC 2 cut(s) 618, 793
NmuCI GTSAC 2 cut(s) 779, 1225
NruI TCGCGA 1 cut(s) 909
NsbI TGCGCA 1 cut(s) 1512
NspI RCATGY 2 cut(s) 1021, 1052
OliI CACNNNNGTG 1 cut(s) 653
PaqCI CACCTGC 1 cut(s) 215
PceI AGGCCT 1 cut(s) 537
PdmI GAANNNNTTC 2 cut(s) 1365, 1452
PfeI GAWTC 2 cut(s) 755, 904
PinAI ACCGGT 1 cut(s) 1267
PkrI GCNGC 2 cut(s) 858, 1255
PsiI TTATAA 1 cut(s) 920
Psp1406I AACGTT 1 cut(s) 1560
Psp6I CCWGG 4 cut(s) 973, 1021, 1220, 1552
PspGI CCWGG 4 cut(s) 973, 1021, 1220, 1552
PspN4I GGNNCC 2 cut(s) 618, 793
PspPI GGNCC 2 cut(s) 1025, 1270
PstI CTGCAG 1 cut(s) 1258
PstNI CAGNNNCTG 1 cut(s) 1364
PsuI RGATCY 1 cut(s) 11
RruI TCGCGA 1 cut(s) 909
RsaI GTAC 4 cut(s) 618, 1136, 1380, 1434
RsaNI GTAC 4 cut(s) 617, 1135, 1379, 1433
RseI CAYNNNNRTG 1 cut(s) 653
SaqAI TTAA 8 cut(s) 674, 852, 969, 1011, 1145, 1178, 1400, 1568
SatI GCNGC 2 cut(s) 857, 1254
Sau3AI GATC 7 cut(s) 11, 565, 759, 784, 1006, 1469, 1583
Sau96I GGNCC 2 cut(s) 1025, 1270
ScrFI CCNGG 4 cut(s) 975, 1023, 1222, 1554
SfaNI GCATC 2 cut(s) 691, 1312
SfcI CTRYAG 1 cut(s) 1254
SinI GGWCC 2 cut(s) 1025, 1270
SmiMI CAYNNNNRTG 1 cut(s) 653
SmlI CTYRAG 5 cut(s) 35, 673, 1010, 1144, 1241
SmoI CTYRAG 5 cut(s) 35, 673, 1010, 1144, 1241
SseBI AGGCCT 1 cut(s) 537
SsiI CCGC 5 cut(s) 518, 925, 1281, 1291, 1329
SspMI CTAG 5 cut(s) 630, 681, 890, 998, 1155
StuI AGGCCT 1 cut(s) 537
StyD4I CCNGG 4 cut(s) 973, 1021, 1220, 1552
TaaI ACNGT 4 cut(s) 415, 1342, 1366, 1417
TaiI ACGT 2 cut(s) 588, 1563
TatI WGTACW 1 cut(s) 1432
TfiI GAWTC 2 cut(s) 755, 904
Tru1I TTAA 8 cut(s) 674, 852, 969, 1011, 1145, 1178, 1400, 1568
Tru9I TTAA 8 cut(s) 674, 852, 969, 1011, 1145, 1178, 1400, 1568
TscAI CASTG 1 cut(s) 655
TseFI GTSAC 2 cut(s) 779, 1225
TseI GCWGC 2 cut(s) 856, 1253
Tsp45I GTSAC 2 cut(s) 779, 1225
TspDTI ATGAA 7 cut(s) 290, 408, 783, 821, 882, 1105, 1607
TspGWI ACGGA 1 cut(s) 1596
TspRI CASTG 1 cut(s) 655
Vha464I CTTAAG 3 cut(s) 673, 1010, 1144
VpaK11BI GGWCC 2 cut(s) 1025, 1270
XagI CCTNNNNNAGG 1 cut(s) 633
XapI RAATTY 4 cut(s) 773, 1094, 1448, 1531
XceI RCATGY 2 cut(s) 1021, 1052
XmnI GAANNNNTTC 2 cut(s) 1365, 1452
XspI CTAG 5 cut(s) 630, 681, 890, 998, 1155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.