Rh6CG317000

Patellin-4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001644
Physical Location & Seq
Forward (+)
50217395 .. 50245354
27960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG317000.1

Sequence Viewer

Length: 417 bp
ATGGTTCTAGTAATTAATATTACTAGTAATTTTAAGCATCGAATGTGGACTTCAGCTGGGGGCAGCTGTCTGCATACTAAAAGCCCCTTCTGCCCAACTATGTTCTCTGCTGATTGCTTTTGCGGACTTCAAATTATCCATGCACTTCGTGGTGGATTGACAATGGTGTGGGATCTAACCGTGGTGGGATGGGATGTGTTGTACAAGGAAGAGTTCGTTCCTGATGATGAAGGGTCATATAAGATTTTACTCCAAGATAAGAAGAGACTGCAAGGGGAGGGTGTAAGAAACTCCTTCTACCTTAGTGAACCAGGGAAGATAATCATTTCCCTTGAGAATTGGAATTTCAAGAACAGGAGGGTTCTTTATCGGTATAAAGCCAAACCCACCATTCCCATTTACTTAACAAATAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

138

Amino Acids

15.94

Weight (kDa)

9.25

Isoelectric Point (pI)

39.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GOLD_PATL1_C PF25099 52 - 118 1.1e-25 Patellin-1-like, C-terminal GOLD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 123
AclWI GGATC 1 cut(s) 180
AcsI RAATTY 1 cut(s) 343
AcuI CTGAAG 1 cut(s) 36
AdeI CACNNNGTG 1 cut(s) 149
AfaI GTAC 1 cut(s) 203
AgsI TTSAA 2 cut(s) 131, 349
AhlI ACTAGT 1 cut(s) 23
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 2 cut(s) 56, 66
AluI AGCT 2 cut(s) 56, 66
Alw26I GTCTC 1 cut(s) 259
AlwI GGATC 1 cut(s) 180
ApeKI GCWGC 1 cut(s) 63
ApoI RAATTY 1 cut(s) 343
AseI ATTAAT 1 cut(s) 15
BbvI GCAGC 1 cut(s) 75
BccI CCATC 1 cut(s) 183
BciT130I CCWGG 1 cut(s) 312
BcoDI GTCTC 1 cut(s) 259
BcuI ACTAGT 1 cut(s) 23
BfaI CTAG 2 cut(s) 8, 24
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
Bme1390I CCNGG 1 cut(s) 312
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 1 cut(s) 46
BpuEI CTTGAG 1 cut(s) 353
BsaJI CCNNGG 2 cut(s) 180, 311
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 2 cut(s) 180, 311
BseGI GGATG 2 cut(s) 194, 199
BseXI GCAGC 1 cut(s) 75
BseYI CCCAGC 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 259
Bsp1407I TGTACA 1 cut(s) 201
Bsp143I GATC 1 cut(s) 172
BspACI CCGC 1 cut(s) 123
BspPI GGATC 1 cut(s) 180
BsrGI TGTACA 1 cut(s) 201
BssECI CCNNGG 2 cut(s) 180, 311
BssMI GATC 1 cut(s) 172
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 2 cut(s) 204, 257
BstAUI TGTACA 1 cut(s) 201
BstDEI CTNAG 1 cut(s) 302
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 2 cut(s) 194, 199
BstKTI GATC 1 cut(s) 175
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstNI CCWGG 1 cut(s) 312
BstSCI CCNGG 1 cut(s) 310
BstV1I GCAGC 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BtgI CCRYGG 1 cut(s) 180
BtsCI GGATG 2 cut(s) 194, 199
Csp6I GTAC 1 cut(s) 202
CviAII CATG 1 cut(s) 140
CviJI RGCY 4 cut(s) 56, 66, 84, 380
CviKI_1 RGCY 4 cut(s) 56, 66, 84, 380
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 1 cut(s) 302
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
DraIII CACNNNGTG 1 cut(s) 149
Eam1104I CTCTTC 2 cut(s) 204, 257
EarI CTCTTC 2 cut(s) 204, 257
Eco57I CTGAAG 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 310
FaeI CATG 1 cut(s) 143
FaiI YATR 6 cut(s) 75, 101, 141, 238, 240, 375
FatI CATG 1 cut(s) 139
Fnu4HI GCNGC 1 cut(s) 64
FokI GGATG 2 cut(s) 201, 206
Fsp4HI GCNGC 1 cut(s) 64
FspBI CTAG 2 cut(s) 8, 24
GluI GCNGC 1 cut(s) 64
GsaI CCCAGC 1 cut(s) 60
Hin1II CATG 1 cut(s) 143
Hpy166II GTNNAC 2 cut(s) 48, 308
Hpy188III TCNNGA 2 cut(s) 221, 349
Hpy8I GTNNAC 2 cut(s) 48, 308
HpyAV CCTTC 3 cut(s) 97, 224, 304
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 3 cut(s) 73, 143, 271
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpyF3I CTNAG 1 cut(s) 302
Hsp92II CATG 1 cut(s) 143
Kzo9I GATC 1 cut(s) 172
LpnPI CCDG 5 cut(s) 42, 234, 297, 324, 340
Lsp1109I GCAGC 1 cut(s) 75
LweI GCATC 1 cut(s) 46
MaeI CTAG 2 cut(s) 8, 24
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 3 cut(s) 221, 274, 328
MflI RGATCY 1 cut(s) 172
MluCI AATT 5 cut(s) 12, 28, 132, 337, 343
MnlI CCTC 2 cut(s) 271, 351
MseI TTAA 3 cut(s) 15, 33, 404
MspA1I CMGCKG 2 cut(s) 56, 66
MspR9I CCNGG 1 cut(s) 312
MvaI CCWGG 1 cut(s) 312
MwoI GCNNNNNNNGC 1 cut(s) 90
NdeII GATC 1 cut(s) 172
NlaIII CATG 1 cut(s) 143
PkrI GCNGC 1 cut(s) 65
PshBI ATTAAT 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 310
PspFI CCCAGC 1 cut(s) 56
PspGI CCWGG 1 cut(s) 310
PsuI RGATCY 1 cut(s) 172
PvuII CAGCTG 2 cut(s) 56, 66
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SaqAI TTAA 3 cut(s) 15, 33, 404
SatI GCNGC 1 cut(s) 64
Sau3AI GATC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 312
SetI ASST 3 cut(s) 58, 68, 303
SfaNI GCATC 1 cut(s) 46
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
SpeI ACTAGT 1 cut(s) 23
Sse9I AATT 5 cut(s) 12, 28, 132, 337, 343
SsiI CCGC 1 cut(s) 123
SspI AATATT 1 cut(s) 19
SspMI CTAG 2 cut(s) 8, 24
StyD4I CCNGG 1 cut(s) 310
TaaI ACNGT 1 cut(s) 181
TaqI TCGA 1 cut(s) 40
TasI AATT 5 cut(s) 12, 28, 132, 337, 343
TatI WGTACW 1 cut(s) 201
Tru1I TTAA 3 cut(s) 15, 33, 404
Tru9I TTAA 3 cut(s) 15, 33, 404
TseI GCWGC 1 cut(s) 63
TspDTI ATGAA 1 cut(s) 243
VspI ATTAAT 1 cut(s) 15
XapI RAATTY 1 cut(s) 343
XcmI CCANNNNNNNNNTGG 1 cut(s) 146
XspI CTAG 2 cut(s) 8, 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.