Rroxscaffold_1G00054670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001644
Physical Location & Seq
Forward (+)
76049451 .. 76053422
3972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00054670.1

Sequence Viewer

Length: 624 bp
ATGTCTCGGTTGAAGACATCCAAGACTAGGGGTAATGCAATAAAGGATATCAAAGATGCAGGGGAAGCTGCCAAGTCTATAAAGATCAATGAGCCCGTAATAATAGAAGAGGCGGTGGTTGAAGAGAACAAGAAGAAGAATGAAGCTGAAACCAAAGAGATTGTGGTGGAGAACAAGAGAAAAGAAGCTAATCAAACAGAGAAGAAAAATGATGAGGTTGAAAAGGCCGATGCTTCCAAACGTACCAAATTCATCCATGGCAACAGAAGAAAAGTTAGAAGAGGGCCGAAGATTAGGGATGTAGTTGAAGAGGTGGTGAAGGAGGAGGAGAAGAAGATTGAAACGGAACCAAATGAGATTGTGGTGGAGAAGAAGGGAAAAGAAGCTGATCAAACAGAGAAGAAGAAGGATGAGGTTGAAAAGGACGATGCTTCAAAATGTACCAAAGCTGAGAAAAGTTCATCCATGGCAACTAAAGAAAAGTTAGAAGAGGGCCATAAGGATAGGGGTATAGTTGAAGAGGTGTTGAAGGAGGAGAAGAAGAAGATTGAAGCGGAACCAACAGAGATTGTTGTCGAGAAGAAGGGAAAAGAAGCTGATCAAACGAGAGAAGAAGAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

23.72

Weight (kDa)

6.83

Isoelectric Point (pI)

48.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 113, 554
AcsI RAATTY 1 cut(s) 248
AfaI GTAC 2 cut(s) 244, 442
AfiI CCNNNNNNNGG 1 cut(s) 27
AluBI AGCT 6 cut(s) 68, 146, 188, 386, 449, 596
AluI AGCT 6 cut(s) 68, 146, 188, 386, 449, 596
Alw26I GTCTC 1 cut(s) 9
AoxI GGCC 3 cut(s) 225, 284, 493
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 248
AspS9I GGNCC 2 cut(s) 284, 493
AsuHPI GGTGA 1 cut(s) 328
BanII GRGCYC 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 20
BbvI GCAGC 1 cut(s) 55
BclI TGATCA 2 cut(s) 388, 598
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 27
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
BmgT120I GGNCC 2 cut(s) 284, 493
BmiI GGNNCC 2 cut(s) 348, 558
BmsI GCATC 3 cut(s) 46, 220, 418
BpiI GAAGAC 1 cut(s) 20
BsaJI CCNNGG 2 cut(s) 256, 465
Bsc4I CCNNNNNNNGG 1 cut(s) 27
BseDI CCNNGG 2 cut(s) 256, 465
BseGI GGATG 5 cut(s) 17, 252, 304, 415, 461
BseLI CCNNNNNNNGG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 441
BseRI GAGGAG 3 cut(s) 338, 341, 548
BseXI GCAGC 1 cut(s) 55
BshFI GGCC 3 cut(s) 227, 286, 495
BslI CCNNNNNNNGG 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 3 cut(s) 227, 286, 495
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 3 cut(s) 84, 388, 598
Bsp19I CCATGG 2 cut(s) 256, 465
BspACI CCGC 2 cut(s) 113, 554
BspANI GGCC 3 cut(s) 227, 286, 495
BspCNI CTCAG 1 cut(s) 442
BspLI GGNNCC 2 cut(s) 348, 558
BssECI CCNNGG 2 cut(s) 256, 465
BssMI GATC 3 cut(s) 84, 388, 598
BssT1I CCWWGG 2 cut(s) 256, 465
Bst6I CTCTTC 6 cut(s) 102, 117, 274, 303, 483, 513
BstDEI CTNAG 1 cut(s) 450
BstDSI CCRYGG 2 cut(s) 256, 465
BstF5I GGATG 5 cut(s) 17, 252, 304, 415, 461
BstKTI GATC 3 cut(s) 87, 391, 601
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 3 cut(s) 84, 388, 598
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 20
BsuRI GGCC 3 cut(s) 227, 286, 495
BtgI CCRYGG 2 cut(s) 256, 465
BtsCI GGATG 5 cut(s) 17, 252, 304, 415, 461
Cfr13I GGNCC 2 cut(s) 284, 493
Csp6I GTAC 2 cut(s) 243, 441
CviAII CATG 2 cut(s) 257, 466
CviQI GTAC 2 cut(s) 243, 441
DdeI CTNAG 1 cut(s) 450
DpnI GATC 3 cut(s) 86, 390, 600
DpnII GATC 3 cut(s) 84, 388, 598
Eam1104I CTCTTC 6 cut(s) 102, 117, 274, 303, 483, 513
EarI CTCTTC 6 cut(s) 102, 117, 274, 303, 483, 513
Eco130I CCWWGG 2 cut(s) 256, 465
Eco24I GRGCYC 1 cut(s) 96
Eco32I GATATC 1 cut(s) 49
EcoRV GATATC 1 cut(s) 49
EcoT14I CCWWGG 2 cut(s) 256, 465
EcoT38I GRGCYC 1 cut(s) 96
ErhI CCWWGG 2 cut(s) 256, 465
FaeI CATG 2 cut(s) 260, 469
FaiI YATR 5 cut(s) 80, 258, 467, 498, 512
FatI CATG 2 cut(s) 256, 465
FbaI TGATCA 2 cut(s) 388, 598
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 5 cut(s) 4, 239, 311, 422, 448
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 1 cut(s) 27
GluI GCNGC 1 cut(s) 69
HaeIII GGCC 3 cut(s) 227, 286, 495
Hin1II CATG 2 cut(s) 260, 469
HphI GGTGA 1 cut(s) 328
Hpy188III TCNNGA 1 cut(s) 577
HpyAV CCTTC 5 cut(s) 313, 367, 400, 523, 577
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 2 cut(s) 38, 59
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 450
HpySE526I ACGT 1 cut(s) 241
Hsp92II CATG 2 cut(s) 260, 469
Ksp22I TGATCA 2 cut(s) 388, 598
Kzo9I GATC 3 cut(s) 84, 388, 598
LpnPI CCDG 1 cut(s) 45
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 3 cut(s) 46, 220, 418
MaeI CTAG 1 cut(s) 27
MaeII ACGT 1 cut(s) 241
MalI GATC 3 cut(s) 86, 390, 600
MboI GATC 3 cut(s) 84, 388, 598
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 1 cut(s) 248
MwoI GCNNNNNNNGC 1 cut(s) 65
NcoI CCATGG 2 cut(s) 256, 465
NdeII GATC 3 cut(s) 84, 388, 598
NlaIII CATG 2 cut(s) 260, 469
NlaIV GGNNCC 2 cut(s) 348, 558
PkrI GCNGC 1 cut(s) 70
PspN4I GGNNCC 2 cut(s) 348, 558
PspPI GGNCC 2 cut(s) 284, 493
RsaI GTAC 2 cut(s) 244, 442
RsaNI GTAC 2 cut(s) 243, 441
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 3 cut(s) 84, 388, 598
Sau96I GGNCC 2 cut(s) 284, 493
SduI GDGCHC 1 cut(s) 96
SfaNI GCATC 3 cut(s) 46, 220, 418
Sse9I AATT 1 cut(s) 248
SsiI CCGC 2 cut(s) 113, 554
SspMI CTAG 1 cut(s) 27
StyI CCWWGG 2 cut(s) 256, 465
TaiI ACGT 1 cut(s) 244
TaqI TCGA 1 cut(s) 576
TasI AATT 1 cut(s) 248
TseI GCWGC 1 cut(s) 68
TspDTI ATGAA 3 cut(s) 156, 241, 450
TspGWI ACGGA 1 cut(s) 359
XapI RAATTY 1 cut(s) 248
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.