Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000740

Physical Location & Seq

Genomic Coordinates Reverse (-)

33440921 .. 33441521

Gene Structure 601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g39270.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTTAACTTGTTCAAACTACTTAATAGCTGCTTTGCCTCTCACGAATTACACACCAAAAGCGAAGCCAGATAAGCAAAGAGATCCAACGGCACTTGATTCCATGGCCTCCAACGCCCTTCATCTTTTCCCCTGCCGCATTCCAACCACTCTCCGAGGTAACTTGACGTCGTGTTTCTCCATTAATCCATCTAGGATGACTAGAAGCAGGTTAGCTTTCAACACACGGCGCCACACCATGTCTTGCAGTTCCGAAAATGGAGAGAACCAGAGCCAGCCTTTGGAAGAAGAGAGTGTGAGCCTAAAGCATTTTATTGAGCAAGCCAAGGATCTTGTCACATCCGACGCCGGACAGCCTCACTGGTTCTCACCTTCAGACTGCGGCCACCCTTTACCCGATCCCCCCCTGCCGGGAATTGATGGCACTGGACTTGGGCTTATAATGCATCATCAGAAACTTGGAGACTATGTTTTAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010287 GO:0016101 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019432 GO:0033306 GO:0034308 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576 GO:1901615 GO:1903173

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 DAGAT Hydrolase_4

Protein Analysis

160

Amino Acids

17.52

Weight (kDa)

6.64

Isoelectric Point (pI)

51.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02030 AT3G02030 AT3G26820 AT3G26820 AT3G26840 AT5G41120 AT5G41120 AT5G41120 AT5G41130 AT5G41130 AT5G41130
fragaria_vesca	FvH4_3g35400 FvH4_3g39220 FvH4_3g39220 FvH4_3g39270 FvH4_3g39280 FvH4_3g39280 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060
malus_domestica	MD09G1005800.v1.1 MD17G1009900.v1.1
prunus_persica	Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1
pyrus_communis	pycom111g00420
rosa_chinensis	RchiOBHm_Chr2g0176241 RchiOBHm_Chr5g0070671 RchiOBHm_Chr5g0070681 RchiOBHm_Chr5g0070691
rosa_laevigata	RLG00000022394 RLG00000036149 RLG00000036150 RLG00000036152
rosa_multiflora	Rmu_co8466433.1_g000001 Rmu_sc0000249.1_g000001 Rmu_sc0000405.1_g000016 Rmu_sc0005197.1_g000009 Rmu_sc0005197.1_g000015 Rmu_sc0036323.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010480 Rroxscaffold_1G00010530 Rroxscaffold_1G00010550 Rroxscaffold_1G00010560 Rroxscaffold_2G00076650 Rroxscaffold_5G00357250
rosa_rugosa	Rorug02G0592200 Rorug02G0592300 Rorug05G0407500 Rorug05G0407800
rosa_samantha	Rh2AG670700 Rh2BG682200 Rh2CG645000 Rh2DG695800 Rh5AG463200 Rh5AG463300 Rh5AG463400 Rh5BG481200 Rh5CG505400 Rh5CG505500 Rh5DG493300 Rh5DG493600 Rh5DG493700
rosa_wichuraiana	Rw2G055020 Rw5G043110 Rw5G043120 Rw5G043130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	440
AatII	GACGTC	1 cut(s)	170
Acc36I	ACCTGC	1 cut(s)	198
AccB1I	GGYRCC	1 cut(s)	228
AccB7I	CCANNNNNTGG	1 cut(s)	280
AciI	CCGC	2 cut(s)	136, 381
AclWI	GGATC	3 cut(s)	77, 336, 392
AcoI	YGGCCR	1 cut(s)	382
AcuI	CTGAAG	1 cut(s)	357
AcyI	GRCGYC	3 cut(s)	167, 229, 345
AfiI	CCNNNNNNNGG	3 cut(s)	280, 409, 410
AgsI	TTSAA	2 cut(s)	15, 220
AluBI	AGCT	2 cut(s)	29, 215
AluI	AGCT	2 cut(s)	29, 215
Alw26I	GTCTC	1 cut(s)	456
AlwI	GGATC	3 cut(s)	77, 336, 392
AoxI	GGCC	2 cut(s)	105, 382
ApeKI	GCWGC	1 cut(s)	29
AseI	ATTAAT	1 cut(s)	183
AspLEI	GCGC	1 cut(s)	231
AsuC2I	CCSGG	1 cut(s)	411
AsuHPI	GGTGA	1 cut(s)	360
BanI	GGYRCC	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	2 cut(s)	196, 413
BceAI	ACGGC	2 cut(s)	105, 242
BcnI	CCSGG	1 cut(s)	411
BcoDI	GTCTC	1 cut(s)	456
BfaI	CTAG	2 cut(s)	192, 201
BfoI	RGCGCY	1 cut(s)	232
BfuAI	ACCTGC	1 cut(s)	198
BisI	GCNGC	3 cut(s)	30, 136, 382
BlsI	GCNGC	3 cut(s)	31, 137, 383
Bme1390I	CCNGG	1 cut(s)	411
BmiI	GGNNCC	1 cut(s)	230
BmrFI	CCNGG	1 cut(s)	411
BmsI	GCATC	1 cut(s)	454
BpuMI	CCSGG	1 cut(s)	411
BsaHI	GRCGYC	3 cut(s)	167, 229, 345
BsaJI	CCNNGG	3 cut(s)	102, 154, 324
BsaXI	ACNNNNNCTCC	1 cut(s)	453
Bsc4I	CCNNNNNNNGG	3 cut(s)	280, 409, 410
Bse1I	ACTGG	2 cut(s)	365, 430
BseDI	CCNNGG	3 cut(s)	102, 154, 324
BseGI	GGATG	2 cut(s)	201, 338
BseLI	CCNNNNNNNGG	3 cut(s)	280, 409, 410
BseNI	ACTGG	2 cut(s)	365, 430
BseXI	GCAGC	1 cut(s)	16
BshFI	GGCC	2 cut(s)	107, 384
BshNI	GGYRCC	1 cut(s)	228
BsiSI	CCGG	2 cut(s)	348, 410
BslI	CCNNNNNNNGG	3 cut(s)	280, 409, 410
BsmAI	GTCTC	1 cut(s)	456
BsmI	GAATGC	1 cut(s)	138
BsnI	GGCC	2 cut(s)	107, 384
Bsp143I	GATC	3 cut(s)	82, 328, 397
Bsp19I	CCATGG	1 cut(s)	102
BspACI	CCGC	2 cut(s)	136, 381
BspANI	GGCC	2 cut(s)	107, 384
BspLI	GGNNCC	1 cut(s)	230
BspMI	ACCTGC	1 cut(s)	198
BspPI	GGATC	3 cut(s)	77, 336, 392
BspT107I	GGYRCC	1 cut(s)	228
BsrI	ACTGG	2 cut(s)	365, 430
BssECI	CCNNGG	3 cut(s)	102, 154, 324
BssMI	GATC	3 cut(s)	82, 328, 397
BssNI	GRCGYC	3 cut(s)	167, 229, 345
BssT1I	CCWWGG	2 cut(s)	102, 324
Bst6I	CTCTTC	1 cut(s)	282
BstACI	GRCGYC	3 cut(s)	167, 229, 345
BstC8I	GCNNGC	2 cut(s)	275, 321
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	2 cut(s)	201, 338
BstH2I	RGCGCY	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	3 cut(s)	85, 331, 400
BstMAI	GTCTC	1 cut(s)	456
BstMBI	GATC	3 cut(s)	82, 328, 397
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 113, 442
BstSCI	CCNGG	1 cut(s)	409
BstV1I	GCAGC	1 cut(s)	16
BstX2I	RGATCY	2 cut(s)	82, 328
BstYI	RGATCY	2 cut(s)	82, 328
BsuRI	GGCC	2 cut(s)	107, 384
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	201, 338
BtsIMutI	CAGTG	2 cut(s)	358, 423
BveI	ACCTGC	1 cut(s)	198
Cac8I	GCNNGC	2 cut(s)	275, 321
CfoI	GCGC	1 cut(s)	231
CseI	GACGC	1 cut(s)	353
CviAII	CATG	2 cut(s)	103, 238
DinI	GGCGCC	1 cut(s)	230
DpnI	GATC	3 cut(s)	84, 330, 399
DpnII	GATC	3 cut(s)	82, 328, 397
EaeI	YGGCCR	1 cut(s)	382
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco130I	CCWWGG	2 cut(s)	102, 324
Eco57I	CTGAAG	1 cut(s)	357
EcoT14I	CCWWGG	2 cut(s)	102, 324
EcoT22I	ATGCAT	1 cut(s)	447
EgeI	GGCGCC	1 cut(s)	230
EheI	GGCGCC	1 cut(s)	230
ErhI	CCWWGG	2 cut(s)	102, 324
FaeI	CATG	2 cut(s)	106, 241
FaiI	YATR	4 cut(s)	104, 239, 440, 468
FatI	CATG	2 cut(s)	102, 237
Fnu4HI	GCNGC	3 cut(s)	30, 136, 382
FokI	GGATG	2 cut(s)	208, 325
Fsp4HI	GCNGC	3 cut(s)	30, 136, 382
FspBI	CTAG	2 cut(s)	192, 201
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	3 cut(s)	30, 136, 382
HaeII	RGCGCY	1 cut(s)	232
HaeIII	GGCC	2 cut(s)	107, 384
HapII	CCGG	2 cut(s)	348, 410
HgaI	GACGC	1 cut(s)	353
HhaI	GCGC	1 cut(s)	231
Hin1I	GRCGYC	3 cut(s)	167, 229, 345
Hin1II	CATG	2 cut(s)	106, 241
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	98
HpaI	GTTAAC	1 cut(s)	6
HpaII	CCGG	2 cut(s)	348, 410
HphI	GGTGA	1 cut(s)	360
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	5 cut(s)	155, 253, 343, 376, 453
Hpy188III	TCNNGA	1 cut(s)	43
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	2 cut(s)	172, 347
HpyAV	CCTTC	2 cut(s)	128, 381
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	2 cut(s)	246, 445
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 113, 442
HpySE526I	ACGT	1 cut(s)	167
Hsp92I	GRCGYC	3 cut(s)	167, 229, 345
Hsp92II	CATG	2 cut(s)	106, 241
HspAI	GCGC	1 cut(s)	229
KasI	GGCGCC	1 cut(s)	228
KspAI	GTTAAC	1 cut(s)	6
Kzo9I	GATC	3 cut(s)	82, 328, 397
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	1 cut(s)	454
MaeI	CTAG	2 cut(s)	192, 201
MaeII	ACGT	1 cut(s)	167
MaeIII	GTNAC	2 cut(s)	158, 334
MalI	GATC	3 cut(s)	84, 330, 399
MboI	GATC	3 cut(s)	82, 328, 397
MboII	GAAGA	2 cut(s)	296, 299
MflI	RGATCY	2 cut(s)	82, 328
MluCI	AATT	2 cut(s)	46, 414
Mly113I	GGCGCC	1 cut(s)	229
MmeI	TCCRAC	4 cut(s)	110, 135, 167, 366
MnlI	CCTC	4 cut(s)	48, 118, 149, 366
Mph1103I	ATGCAT	1 cut(s)	447
MseI	TTAA	5 cut(s)	5, 23, 183, 473, 478
MspI	CCGG	2 cut(s)	348, 410
MspR9I	CCNGG	1 cut(s)	411
Mva1269I	GAATGC	1 cut(s)	138
MwoI	GCNNNNNNNGC	3 cut(s)	73, 113, 442
NarI	GGCGCC	1 cut(s)	229
NciI	CCSGG	1 cut(s)	411
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	3 cut(s)	82, 328, 397
NlaIII	CATG	2 cut(s)	106, 241
NlaIV	GGNNCC	1 cut(s)	230
NmuCI	GTSAC	1 cut(s)	334
NsiI	ATGCAT	1 cut(s)	447
PctI	GAATGC	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	98
PflMI	CCANNNNNTGG	1 cut(s)	280
PkrI	GCNGC	3 cut(s)	31, 137, 383
PluTI	GGCGCC	1 cut(s)	232
PshBI	ATTAAT	1 cut(s)	183
PsiI	TTATAA	1 cut(s)	440
PspN4I	GGNNCC	1 cut(s)	230
PsuI	RGATCY	2 cut(s)	82, 328
SaqAI	TTAA	5 cut(s)	5, 23, 183, 473, 478
SatI	GCNGC	3 cut(s)	30, 136, 382
Sau3AI	GATC	3 cut(s)	82, 328, 397
ScrFI	CCNGG	1 cut(s)	411
SetI	ASST	6 cut(s)	31, 160, 170, 212, 217, 373
SfaNI	GCATC	1 cut(s)	454
SfoI	GGCGCC	1 cut(s)	230
Sse9I	AATT	2 cut(s)	46, 414
SsiI	CCGC	2 cut(s)	136, 381
SspDI	GGCGCC	1 cut(s)	228
SspMI	CTAG	2 cut(s)	192, 201
StyD4I	CCNGG	1 cut(s)	409
StyI	CCWWGG	2 cut(s)	102, 324
TaiI	ACGT	1 cut(s)	170
TasI	AATT	2 cut(s)	46, 414
TauI	GCSGC	2 cut(s)	138, 384
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	5 cut(s)	5, 23, 183, 473, 478
Tru9I	TTAA	5 cut(s)	5, 23, 183, 473, 478
TscAI	CASTG	2 cut(s)	365, 430
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	1 cut(s)	110
TspRI	CASTG	2 cut(s)	365, 430
Van91I	CCANNNNNTGG	1 cut(s)	280
VspI	ATTAAT	1 cut(s)	183
XspI	CTAG	2 cut(s)	192, 201
ZraI	GACGTC	1 cut(s)	168
Zsp2I	ATGCAT	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.