Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000740

Physical Location & Seq

Genomic Coordinates Reverse (-)

76517883 .. 76522765

Gene Structure 4883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34588

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2070 bp

ATGTCCTGCAACGCACTTTGTCTCTGTCCCTGCCTCTTTCCTCCTTCCATTTTCCGACATGAATTGACGTCTTCACCATCAGGAAGGTCTAAGTTAACTGCCTTGTTCTCTATTAATCCATCTAGGACTAGGACTAGGAGGTTAGCCGTCTCCACACACCACACTCCAACCTTGACGTCTCGGATAACGGGAGCTATGGAGGATCATGATCATCGTCATCGACATGTAGAGGACGAGCTGGTGAGCTTCAAACATTTTATTGAGCAAGCTAAGGATCTTGTCAGACCAGACAGCAGTACTTCTGCACCGTCACCTCGCTGGTTCTCACCTTTAGACTGCGGCCCCCCATTGGACAATTCCCCCCTGCTTCTCTTTTTGCCCGGAATTGATGGCACCGGACTTGGGCTTATAATGCATCACAAGAAACTAGGAAAGATTTTCGAGGTCTGGTGCTTGCACATCCCTCCTAAAGATCGAACACCATTTACAGACTTAGTGAAGCTAATTGAGAGCACAATTCGGTCAGAGCATCATCGCTCACCTAATAGACCAATATATCTTGTTGGAGAATCGCTTGGAGCATGCCTTGCACTATCTGTGGCAGCCTTTAACCCTGACATCGACCTTGTTCTAATTTTAGCAAGTCCAGCAACATCCTTCAGCAGGTCACAACTTCAACCCATATTACATTTACTGCAGTTCATCCCTGACTCACCCAATCTTAGCCTTCTTCATATACTCAGTTCAATGACTGGTGCAATGATGGATAATTTGGAGAAAGGAATTGAAAGGCTATCGCCGGATCTTGTTGCACCATCAATAGCTTACCTCTCTGTTATTGCTGATATCTTACCCATGGAAACACTTGCATGGAAGCTACAAATGATTAGTTCAGCTTCTTCTTATGCCAATTCACACCTCCATGCTGTGAAGGCTCAAACCCTGATACTTTCCAGCGGAAGGGATCCATTGCTACCTAGTCATGAGGAAGGTCCGAGACTACGATGGCTGCTGGCAAATTGTGAAATCTGTACTTTTGAAGACTGCGGTCATTTCCTCTTCTTGGAAGCTGCTCATGATTTGGTAACTGTCATCAAGCAGCTTGGTGTCTATCGTCGTTCAAAAGAAAGAGACTTTGTTTCAGATTACATACCACTATCACCTTCTGAATTAAAAAATGTATTGGACAAACACAGATGGATTAGCACAGTCATGAGCCCAGTTATACTCTCAACTTTAGAAGATGGGAAGATAGTGAGGGGCTTTGCCGGGATTCCTTTAGAGGGCCCTGTAGTGTATGTTGGTTATCACATGTTACTGGGATTTGAACTCTTTCCATTGGTAACGATGTTTTCAGAACAAAAAAACATCCCTCTGAGAGGTTTAGCACATCCAGCGATGTTTATGAAATTGAATCAAGGATGGTTACCTGAGCATATGTTTGACGATCTCAAACATGCGGGGGCTGTTCCTGTCTCCGGAAAAAACTTTTTTAAGCTTCTCTCTACAAAGTCTCATTTCCTACTCTTTCCTGGTGGATTGCGGGAGGCTTTACACTTGAAGGGGGAAGCATATAAGTTATTCTGGCCGGAAAGGGCAGAGTTTGTGAGGATGGCAGCTAGATTTGGCGCGAAGATCGTACCTTTCGGTACAGTTGGAGAGGATGATTTTGCTGACGTATTATTCGATTATGAAGACCAGATGAAAATTCCATTCTTCAAGAAATATATAGATGAATTATCGGATAAATTAGCTGGAAAAGTGAGGGCAACTTCTGGGGGGGAGGTAGGAAACCAAGCTTTATACTTGCCAGGAATTCTACCAAAATTTCCTGGCCGGTTTTATCATCATTTTGGGAAACCAATTGAAACAGAAGGGAGGAAGGAGGAATTACGAGACAAGGAAAATGCTCATGAATTGTATTTACAGGTGAAGTCAGATGTTGAGAACTGCCTTGCATATTTGCAGGAAAAAAGAGAGAGTGATCCATACAGAAGCCTTGTGTCTCGGATACTATACCAAGCCAAAAATGGCTTTACAGCTCAAGTTCCTACATTTGACGTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010287 GO:0016101 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019432 GO:0033306 GO:0034308 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576 GO:1901615 GO:1903173

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 DAGAT Hydrolase_4

Protein Analysis

689

Amino Acids

77.34

Weight (kDa)

6.77

Isoelectric Point (pI)

51.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_6	PF12697	155 - 362	6.4e-09	Alpha/beta hydrolase family
Abhydrolase_1	PF00561	161 - 357	1.7e-07	alpha/beta hydrolase fold
Hydrolase_4	PF12146	162 - 356	1.2e-07	Serine aminopeptidase, S33
DAGAT	PF03982	486 - 560	5e-07	Diacylglycerol acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02030 AT3G02030 AT3G26820 AT3G26820 AT3G26840 AT5G41120 AT5G41120 AT5G41120 AT5G41130 AT5G41130 AT5G41130
fragaria_vesca	FvH4_3g35400 FvH4_3g39220 FvH4_3g39220 FvH4_3g39270 FvH4_3g39280 FvH4_3g39280 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060
malus_domestica	MD09G1005800.v1.1 MD17G1009900.v1.1
prunus_persica	Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1
pyrus_communis	pycom111g00420
rosa_chinensis	RchiOBHm_Chr2g0176241 RchiOBHm_Chr5g0070671 RchiOBHm_Chr5g0070681 RchiOBHm_Chr5g0070691
rosa_laevigata	RLG00000022394 RLG00000036149 RLG00000036150 RLG00000036152
rosa_multiflora	Rmu_co8466433.1_g000001 Rmu_sc0000249.1_g000001 Rmu_sc0000405.1_g000016 Rmu_sc0005197.1_g000009 Rmu_sc0005197.1_g000015 Rmu_sc0036323.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010480 Rroxscaffold_1G00010530 Rroxscaffold_1G00010550 Rroxscaffold_1G00010560 Rroxscaffold_2G00076650 Rroxscaffold_5G00357250
rosa_rugosa	Rorug02G0592200 Rorug02G0592300 Rorug05G0407500 Rorug05G0407800
rosa_samantha	Rh2AG670700 Rh2BG682200 Rh2CG645000 Rh2DG695800 Rh5AG463200 Rh5AG463300 Rh5AG463400 Rh5BG481200 Rh5CG505400 Rh5CG505500 Rh5DG493300 Rh5DG493600 Rh5DG493700
rosa_wichuraiana	Rw2G055020 Rw5G043110 Rw5G043120 Rw5G043130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	410
AatII	GACGTC	2 cut(s)	71, 179
Acc36I	ACCTGC	1 cut(s)	654
AccB1I	GGYRCC	1 cut(s)	392
AccII	CGCG	1 cut(s)	1631
AccIII	TCCGGA	1 cut(s)	1478
AciI	CCGC	5 cut(s)	339, 957, 1047, 1460, 1543
AclWI	GGATC	6 cut(s)	210, 282, 810, 959, 972, 1979
AcoI	YGGCCR	2 cut(s)	1586, 1834
AcsI	RAATTY	3 cut(s)	1707, 1815, 1826
AcuI	CTGAAG	1 cut(s)	643
AcyI	GRCGYC	2 cut(s)	68, 176
AfaI	GTAC	4 cut(s)	298, 1033, 1641, 1651
AfiI	CCNNNNNNNGG	8 cut(s)	349, 402, 663, 960, 1063, 1283, 1379, 1478
AflIII	ACRYGT	2 cut(s)	223, 1311
AjiI	CACGTC	1 cut(s)	2062
AjnI	CCWGG	3 cut(s)	1531, 1810, 1831
Alw21I	GWGCWC	1 cut(s)	515
Alw26I	GTCTC	9 cut(s)	26, 154, 183, 991, 1125, 1480, 1518, 1890, 2010
AlwI	GGATC	6 cut(s)	210, 282, 810, 959, 972, 1979
Aor13HI	TCCGGA	1 cut(s)	1478
AoxI	GGCC	4 cut(s)	340, 1285, 1586, 1834
ApaI	GGGCCC	1 cut(s)	1289
ApeKI	GCWGC	5 cut(s)	602, 1009, 1070, 1099, 1616
ApoI	RAATTY	3 cut(s)	1707, 1815, 1826
ArsI	GACNNNNNNTTYG	2 cut(s)	1667, 1699
AseI	ATTAAT	1 cut(s)	114
Asp700I	GAANNNNTTC	1 cut(s)	1332
AspLEI	GCGC	1 cut(s)	1631
AspS9I	GGNCC	4 cut(s)	341, 992, 1285, 1286
AsuC2I	CCSGG	2 cut(s)	381, 1270
AsuHPI	GGTGA	8 cut(s)	66, 253, 303, 318, 531, 705, 1152, 1942
AvaII	GGWCC	1 cut(s)	992
BaeGI	GKGCMC	1 cut(s)	1289
BamHI	GGATCC	1 cut(s)	964
BanI	GGYRCC	1 cut(s)	392
BanII	GRGCYC	2 cut(s)	1220, 1289
BbsI	GAAGAC	3 cut(s)	63, 1047, 1701
Bbv12I	GWGCWC	1 cut(s)	515
BbvI	GCAGC	5 cut(s)	614, 996, 1057, 1111, 1628
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	3 cut(s)	1533, 1812, 1833
BciVI	GTATCC	1 cut(s)	2004
BclI	TGATCA	1 cut(s)	208
BcnI	CCSGG	2 cut(s)	381, 1270
BcoDI	GTCTC	9 cut(s)	26, 154, 183, 991, 1125, 1480, 1518, 1890, 2010
BfaI	CTAG	6 cut(s)	123, 129, 135, 428, 978, 1620
BfmI	CTRYAG	2 cut(s)	695, 1290
BfuAI	ACCTGC	1 cut(s)	654
BfuI	GTATCC	1 cut(s)	2004
BisI	GCNGC	6 cut(s)	340, 603, 1010, 1071, 1100, 1617
BlsI	GCNGC	6 cut(s)	341, 604, 1011, 1072, 1101, 1618
BmcAI	AGTACT	1 cut(s)	298
Bme1390I	CCNGG	5 cut(s)	381, 1270, 1533, 1812, 1833
Bme18I	GGWCC	1 cut(s)	992
BmgBI	CACGTC	1 cut(s)	2062
BmgT120I	GGNCC	4 cut(s)	341, 992, 1285, 1286
BmiI	GGNNCC	4 cut(s)	343, 394, 966, 1287
BmrFI	CCNGG	5 cut(s)	381, 1270, 1533, 1812, 1833
BmrI	ACTGGG	2 cut(s)	1214, 1328
BmsI	GCATC	2 cut(s)	424, 538
BmuI	ACTGGG	2 cut(s)	1214, 1328
BoxI	GACNNNNGTC	1 cut(s)	1047
BpiI	GAAGAC	3 cut(s)	63, 1047, 1701
Bpu10I	CCTNAGC	2 cut(s)	270, 1431
BpuEI	CTTGAG	1 cut(s)	2028
BpuMI	CCSGG	2 cut(s)	381, 1270
BsaBI	GATNNNNATC	1 cut(s)	207
BsaHI	GRCGYC	2 cut(s)	68, 176
BsaJI	CCNNGG	1 cut(s)	855
BsaWI	WCCGGW	2 cut(s)	395, 1478
Bsc4I	CCNNNNNNNGG	8 cut(s)	349, 402, 663, 960, 1063, 1283, 1379, 1478
Bse118I	RCCGGY	1 cut(s)	1836
Bse1I	ACTGG	3 cut(s)	757, 1220, 1323
Bse3DI	GCAATG	2 cut(s)	765, 968
Bse8I	GATNNNNATC	1 cut(s)	207
BseAI	TCCGGA	1 cut(s)	1478
BseBI	CCWGG	3 cut(s)	1533, 1812, 1833
BseDI	CCNNGG	1 cut(s)	855
BseGI	GGATG	8 cut(s)	459, 653, 702, 1368, 1390, 1427, 1617, 1669
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	8 cut(s)	349, 402, 663, 960, 1063, 1283, 1379, 1478
BseMI	GCAATG	2 cut(s)	765, 968
BseMII	CTCAG	3 cut(s)	754, 1367, 1422
BseNI	ACTGG	3 cut(s)	757, 1220, 1323
BseSI	GKGCMC	1 cut(s)	1289
BseXI	GCAGC	5 cut(s)	614, 996, 1057, 1111, 1628
BsgI	GTGCAG	1 cut(s)	288
Bsh1236I	CGCG	1 cut(s)	1631
BshFI	GGCC	4 cut(s)	342, 1287, 1588, 1836
BshNI	GGYRCC	1 cut(s)	392
BsiHKAI	GWGCWC	1 cut(s)	515
BsiSI	CCGG	7 cut(s)	381, 396, 800, 1269, 1479, 1589, 1837
BslFI	GGGAC	1 cut(s)	12
BslI	CCNNNNNNNGG	8 cut(s)	349, 402, 663, 960, 1063, 1283, 1379, 1478
BsmAI	GTCTC	9 cut(s)	26, 154, 183, 991, 1125, 1480, 1518, 1890, 2010
BsmBI	CGTCTC	2 cut(s)	154, 183
BsmFI	GGGAC	1 cut(s)	12
BsnI	GGCC	4 cut(s)	342, 1287, 1588, 1836
Bsp120I	GGGCCC	1 cut(s)	1285
Bsp1286I	GDGCHC	3 cut(s)	515, 1220, 1289
Bsp13I	TCCGGA	1 cut(s)	1478
Bsp143I	GATC	9 cut(s)	202, 208, 274, 472, 802, 964, 1447, 1635, 1984
Bsp19I	CCATGG	1 cut(s)	855
BspACI	CCGC	5 cut(s)	339, 957, 1047, 1460, 1543
BspANI	GGCC	4 cut(s)	342, 1287, 1588, 1836
BspCNI	CTCAG	3 cut(s)	753, 1368, 1423
BspEI	TCCGGA	1 cut(s)	1478
BspFNI	CGCG	1 cut(s)	1631
BspHI	TCATGA	5 cut(s)	205, 982, 1075, 1212, 1912
BspLI	GGNNCC	4 cut(s)	343, 394, 966, 1287
BspMAI	CTGCAG	1 cut(s)	699
BspMI	ACCTGC	1 cut(s)	654
BspPI	GGATC	6 cut(s)	210, 282, 810, 959, 972, 1979
BspT107I	GGYRCC	1 cut(s)	392
BsrDI	GCAATG	2 cut(s)	765, 968
BsrFI	RCCGGY	1 cut(s)	1836
BsrI	ACTGG	3 cut(s)	757, 1220, 1323
BssAI	RCCGGY	1 cut(s)	1836
BssECI	CCNNGG	1 cut(s)	855
BssMI	GATC	9 cut(s)	202, 208, 274, 472, 802, 964, 1447, 1635, 1984
BssNI	GRCGYC	2 cut(s)	68, 176
BssT1I	CCWWGG	1 cut(s)	855
Bst2UI	CCWGG	3 cut(s)	1533, 1812, 1833
Bst4CI	ACNGT	4 cut(s)	309, 1090, 1210, 1654
Bst6I	CTCTTC	1 cut(s)	1064
BstACI	GRCGYC	2 cut(s)	68, 176
BstAPI	GCANNNNNTGC	1 cut(s)	587
BstC8I	GCNNGC	4 cut(s)	267, 455, 583, 1014
BstDEI	CTNAG	7 cut(s)	90, 270, 493, 722, 740, 1376, 1431
BstDSI	CCRYGG	1 cut(s)	855
BstEII	GGTNACC	1 cut(s)	1425
BstENI	CCTNNNNNAGG	2 cut(s)	661, 1377
BstF5I	GGATG	8 cut(s)	459, 653, 702, 1368, 1390, 1427, 1617, 1669
BstFNI	CGCG	1 cut(s)	1631
BstHHI	GCGC	1 cut(s)	1631
BstKTI	GATC	9 cut(s)	205, 211, 277, 475, 805, 967, 1450, 1638, 1987
BstMAI	GTCTC	9 cut(s)	26, 154, 183, 991, 1125, 1480, 1518, 1890, 2010
BstMBI	GATC	9 cut(s)	202, 208, 274, 472, 802, 964, 1447, 1635, 1984
BstMWI	GCNNNNNNNGC	5 cut(s)	412, 587, 647, 932, 1394
BstNI	CCWGG	3 cut(s)	1533, 1812, 1833
BstNSI	RCATGY	4 cut(s)	227, 585, 1315, 1460
BstPAI	GACNNNNGTC	1 cut(s)	1047
BstPI	GGTNACC	1 cut(s)	1425
BstSCI	CCNGG	5 cut(s)	379, 1268, 1531, 1810, 1831
BstSFI	CTRYAG	2 cut(s)	695, 1290
BstSLI	GKGCMC	1 cut(s)	1289
BstUI	CGCG	1 cut(s)	1631
BstV1I	GCAGC	5 cut(s)	614, 996, 1057, 1111, 1628
BstV2I	GAAGAC	3 cut(s)	63, 1047, 1701
BstX2I	RGATCY	3 cut(s)	274, 802, 964
BstYI	RGATCY	3 cut(s)	274, 802, 964
BsuI	GTATCC	1 cut(s)	2004
BsuRI	GGCC	4 cut(s)	342, 1287, 1588, 1836
BtgI	CCRYGG	1 cut(s)	855
BtgZI	GCGATG	2 cut(s)	518, 1412
BtrI	CACGTC	1 cut(s)	2062
BtsCI	GGATG	8 cut(s)	459, 653, 702, 1368, 1390, 1427, 1617, 1669
BveI	ACCTGC	1 cut(s)	654
Cac8I	GCNNGC	4 cut(s)	267, 455, 583, 1014
CciI	TCATGA	5 cut(s)	205, 982, 1075, 1212, 1912
CfoI	GCGC	1 cut(s)	1631
Cfr10I	RCCGGY	1 cut(s)	1836
Cfr13I	GGNCC	4 cut(s)	341, 992, 1285, 1286
Csp6I	GTAC	4 cut(s)	297, 1032, 1640, 1650
CviQI	GTAC	4 cut(s)	297, 1032, 1640, 1650
DdeI	CTNAG	7 cut(s)	90, 270, 493, 722, 740, 1376, 1431
DpnI	GATC	9 cut(s)	204, 210, 276, 474, 804, 966, 1449, 1637, 1986
DpnII	GATC	9 cut(s)	202, 208, 274, 472, 802, 964, 1447, 1635, 1984
EaeI	YGGCCR	2 cut(s)	1586, 1834
Eam1104I	CTCTTC	1 cut(s)	1064
EarI	CTCTTC	1 cut(s)	1064
Eco130I	CCWWGG	1 cut(s)	855
Eco24I	GRGCYC	2 cut(s)	1220, 1289
Eco32I	GATATC	1 cut(s)	847
Eco47I	GGWCC	1 cut(s)	992
Eco57I	CTGAAG	1 cut(s)	643
Eco91I	GGTNACC	1 cut(s)	1425
EcoNI	CCTNNNNNAGG	2 cut(s)	661, 1377
EcoO109I	RGGNCCY	2 cut(s)	1285, 1286
EcoO65I	GGTNACC	1 cut(s)	1425
EcoRI	GAATTC	1 cut(s)	1815
EcoRII	CCWGG	3 cut(s)	1531, 1810, 1831
EcoRV	GATATC	1 cut(s)	847
EcoT14I	CCWWGG	1 cut(s)	855
EcoT22I	ATGCAT	1 cut(s)	417
EcoT38I	GRGCYC	2 cut(s)	1220, 1289
ErhI	CCWWGG	1 cut(s)	855
Esp3I	CGTCTC	2 cut(s)	154, 183
FaqI	GGGAC	1 cut(s)	12
FauI	CCCGC	2 cut(s)	1453, 1536
FauNDI	CATATG	1 cut(s)	1437
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	6 cut(s)	340, 603, 1010, 1071, 1100, 1617
FokI	GGATG	8 cut(s)	446, 640, 689, 1355, 1377, 1434, 1624, 1676
FriOI	GRGCYC	2 cut(s)	1220, 1289
Fsp4HI	GCNGC	6 cut(s)	340, 603, 1010, 1071, 1100, 1617
FspBI	CTAG	6 cut(s)	123, 129, 135, 428, 978, 1620
GlaI	GCGC	1 cut(s)	1630
GluI	GCNGC	6 cut(s)	340, 603, 1010, 1071, 1100, 1617
HaeIII	GGCC	4 cut(s)	342, 1287, 1588, 1836
HapII	CCGG	7 cut(s)	381, 396, 800, 1269, 1479, 1589, 1837
HhaI	GCGC	1 cut(s)	1631
Hin1I	GRCGYC	2 cut(s)	68, 176
Hin6I	GCGC	1 cut(s)	1629
HinP1I	GCGC	1 cut(s)	1629
HincII	GTYRAC	1 cut(s)	96
HindII	GTYRAC	1 cut(s)	96
HindIII	AAGCTT	2 cut(s)	1496, 1797
HinfI	GANTC	4 cut(s)	569, 710, 1273, 1414
HpaI	GTTAAC	1 cut(s)	96
HpaII	CCGG	7 cut(s)	381, 396, 800, 1269, 1479, 1589, 1837
HphI	GGTGA	8 cut(s)	66, 253, 303, 318, 531, 705, 1152, 1942
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188III	TCNNGA	8 cut(s)	81, 206, 983, 1076, 1213, 1479, 1720, 1913
Hpy8I	GTNNAC	1 cut(s)	96
Hpy99I	CGWCG	1 cut(s)	1119
HpyCH4III	ACNGT	4 cut(s)	309, 1090, 1210, 1654
HpyCH4IV	ACGT	4 cut(s)	68, 176, 1677, 2061
HpyF10VI	GCNNNNNNNGC	5 cut(s)	412, 587, 647, 932, 1394
HpyF3I	CTNAG	7 cut(s)	90, 270, 493, 722, 740, 1376, 1431
HpySE526I	ACGT	4 cut(s)	68, 176, 1677, 2061
Hsp92I	GRCGYC	2 cut(s)	68, 176
HspAI	GCGC	1 cut(s)	1629
Kpn2I	TCCGGA	1 cut(s)	1478
Ksp22I	TGATCA	1 cut(s)	208
KspAI	GTTAAC	1 cut(s)	96
Kzo9I	GATC	9 cut(s)	202, 208, 274, 472, 802, 964, 1447, 1635, 1984
LmnI	GCTCC	2 cut(s)	191, 578
Lsp1109I	GCAGC	5 cut(s)	614, 996, 1057, 1111, 1628
LweI	GCATC	2 cut(s)	424, 538
MaeI	CTAG	6 cut(s)	123, 129, 135, 428, 978, 1620
MaeII	ACGT	4 cut(s)	68, 176, 1677, 2061
MaeIII	GTNAC	6 cut(s)	309, 666, 1084, 1314, 1342, 1425
MalI	GATC	9 cut(s)	204, 210, 276, 474, 804, 966, 1449, 1637, 1986
MboI	GATC	9 cut(s)	202, 208, 274, 472, 802, 964, 1447, 1635, 1984
MfeI	CAATTG	1 cut(s)	1863
MflI	RGATCY	3 cut(s)	274, 802, 964
MhlI	GDGCHC	3 cut(s)	515, 1220, 1289
MlyI	GAGTC	1 cut(s)	704
MmeI	TCCRAC	4 cut(s)	79, 191, 544, 1636
Mph1103I	ATGCAT	1 cut(s)	417
MroI	TCCGGA	1 cut(s)	1478
MroXI	GAANNNNTTC	1 cut(s)	1332
MseI	TTAA	6 cut(s)	95, 114, 609, 1172, 1494, 2068
MslI	CAYNNNNRTG	4 cut(s)	222, 868, 921, 1211
MspA1I	CMGCKG	1 cut(s)	957
MspI	CCGG	7 cut(s)	381, 396, 800, 1269, 1479, 1589, 1837
MspR9I	CCNGG	5 cut(s)	381, 1270, 1533, 1812, 1833
MunI	CAATTG	1 cut(s)	1863
MvaI	CCWGG	3 cut(s)	1533, 1812, 1833
MvnI	CGCG	1 cut(s)	1631
MwoI	GCNNNNNNNGC	5 cut(s)	412, 587, 647, 932, 1394
NciI	CCSGG	2 cut(s)	381, 1270
NcoI	CCATGG	1 cut(s)	855
NdeI	CATATG	1 cut(s)	1437
NdeII	GATC	9 cut(s)	202, 208, 274, 472, 802, 964, 1447, 1635, 1984
NlaIV	GGNNCC	4 cut(s)	343, 394, 966, 1287
NmuCI	GTSAC	2 cut(s)	309, 666
NsiI	ATGCAT	1 cut(s)	417
NspI	RCATGY	4 cut(s)	227, 585, 1315, 1460
PaeI	GCATGC	1 cut(s)	585
PagI	TCATGA	5 cut(s)	205, 982, 1075, 1212, 1912
PciI	ACATGT	2 cut(s)	223, 1311
PcsI	WCGNNNNNNNCGW	1 cut(s)	1683
PdmI	GAANNNNTTC	1 cut(s)	1332
PfeI	GAWTC	3 cut(s)	569, 1273, 1414
PkrI	GCNGC	6 cut(s)	341, 604, 1011, 1072, 1101, 1618
PleI	GAGTC	1 cut(s)	704
PpsI	GAGTC	1 cut(s)	704
PscI	ACATGT	2 cut(s)	223, 1311
PshAI	GACNNNNGTC	1 cut(s)	1047
PshBI	ATTAAT	1 cut(s)	114
PsiI	TTATAA	1 cut(s)	410
Psp6I	CCWGG	3 cut(s)	1531, 1810, 1831
PspEI	GGTNACC	1 cut(s)	1425
PspGI	CCWGG	3 cut(s)	1531, 1810, 1831
PspN4I	GGNNCC	4 cut(s)	343, 394, 966, 1287
PspOMI	GGGCCC	1 cut(s)	1285
PspPI	GGNCC	4 cut(s)	341, 992, 1285, 1286
PsrI	GAACNNNNNNTAC	2 cut(s)	469, 501
PstI	CTGCAG	1 cut(s)	699
PsuI	RGATCY	3 cut(s)	274, 802, 964
RsaI	GTAC	4 cut(s)	298, 1033, 1641, 1651
RsaNI	GTAC	4 cut(s)	297, 1032, 1640, 1650
RseI	CAYNNNNRTG	4 cut(s)	222, 868, 921, 1211
SaqAI	TTAA	6 cut(s)	95, 114, 609, 1172, 1494, 2068
SatI	GCNGC	6 cut(s)	340, 603, 1010, 1071, 1100, 1617
Sau3AI	GATC	9 cut(s)	202, 208, 274, 472, 802, 964, 1447, 1635, 1984
Sau96I	GGNCC	4 cut(s)	341, 992, 1285, 1286
ScaI	AGTACT	1 cut(s)	298
SchI	GAGTC	1 cut(s)	704
ScrFI	CCNGG	5 cut(s)	381, 1270, 1533, 1812, 1833
SduI	GDGCHC	3 cut(s)	515, 1220, 1289
SfaNI	GCATC	2 cut(s)	424, 538
SfcI	CTRYAG	2 cut(s)	695, 1290
SinI	GGWCC	1 cut(s)	992
SmiMI	CAYNNNNRTG	4 cut(s)	222, 868, 921, 1211
SmlI	CTYRAG	1 cut(s)	2043
SmoI	CTYRAG	1 cut(s)	2043
SphI	GCATGC	1 cut(s)	585
SsiI	CCGC	5 cut(s)	339, 957, 1047, 1460, 1543
SspMI	CTAG	6 cut(s)	123, 129, 135, 428, 978, 1620
StyD4I	CCNGG	5 cut(s)	379, 1268, 1531, 1810, 1831
StyI	CCWWGG	1 cut(s)	855
TaaI	ACNGT	4 cut(s)	309, 1090, 1210, 1654
TaiI	ACGT	4 cut(s)	71, 179, 1680, 2064
TaqI	TCGA	5 cut(s)	220, 441, 475, 621, 1686
TaqII	GACCGA	1 cut(s)	510
TatI	WGTACW	2 cut(s)	296, 1031
TauI	GCSGC	1 cut(s)	342
TfiI	GAWTC	3 cut(s)	569, 1273, 1414
Tru1I	TTAA	6 cut(s)	95, 114, 609, 1172, 1494, 2068
Tru9I	TTAA	6 cut(s)	95, 114, 609, 1172, 1494, 2068
TseFI	GTSAC	2 cut(s)	309, 666
TseI	GCWGC	5 cut(s)	602, 1009, 1070, 1099, 1616
Tsp45I	GTSAC	2 cut(s)	309, 666
TspDTI	ATGAA	8 cut(s)	75, 691, 722, 1421, 1707, 1718, 1749, 1929
VpaK11BI	GGWCC	1 cut(s)	992
VspI	ATTAAT	1 cut(s)	114
XagI	CCTNNNNNAGG	2 cut(s)	661, 1377
XapI	RAATTY	3 cut(s)	1707, 1815, 1826
XceI	RCATGY	4 cut(s)	227, 585, 1315, 1460
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2027
XmnI	GAANNNNTTC	1 cut(s)	1332
XspI	CTAG	6 cut(s)	123, 129, 135, 428, 978, 1620
ZraI	GACGTC	2 cut(s)	69, 177
ZrmI	AGTACT	1 cut(s)	298
Zsp2I	ATGCAT	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.