Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8466433.1

Orthogroup ID

OG0000740

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1555

Gene Structure 1555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8466433.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 625 bp

caagaccgaggaagagcacttggctctggaggacgacgttggtgatgatcaagcatcggaagagcgtgcgagcttaaaccagttctttgagcaagccaagggtcttctcagatcggacgaccagtacgggcagtacggcactggaacacctcgctggttctcgcctttagactgcgggagcgggaccccctccaaccatgattccccgctccttctctttttgcctggaattgatggcaccggacttggccttgtaaggcatcatcagaaacttggaaagatttttgaggtctcgtgcttgcatatccctcctaaggatcgaacaccgtttacagacttagtgaagctggttgggagaacaattcgttcagagcatgatgcctcacccgatcgtcccatatatcttgttggagaatctcttggagcatgccttgcactctctgtggcagcccttaacccggatatcgaccttgagcttattttagcaaatccagcaacatccttcagcaagtcaccacttcaagctgtattacctttactgcagttcatgcctgactctcccaatcttagccttcctcatatactgagtacaattacaggtctgctttcttgttccatttactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010287 GO:0016101 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019432 GO:0033306 GO:0034308 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576 GO:1901615 GO:1903173

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 DAGAT Hydrolase_4

Protein Analysis

207

Amino Acids

22.47

Weight (kDa)

4.84

Isoelectric Point (pI)

54.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02030 AT3G02030 AT3G26820 AT3G26820 AT3G26840 AT5G41120 AT5G41120 AT5G41120 AT5G41130 AT5G41130 AT5G41130
fragaria_vesca	FvH4_3g35400 FvH4_3g39220 FvH4_3g39220 FvH4_3g39270 FvH4_3g39280 FvH4_3g39280 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060
malus_domestica	MD09G1005800.v1.1 MD17G1009900.v1.1
prunus_persica	Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1
pyrus_communis	pycom111g00420
rosa_chinensis	RchiOBHm_Chr2g0176241 RchiOBHm_Chr5g0070671 RchiOBHm_Chr5g0070681 RchiOBHm_Chr5g0070691
rosa_laevigata	RLG00000022394 RLG00000036149 RLG00000036150 RLG00000036152
rosa_multiflora	Rmu_co8466433.1_g000001 Rmu_sc0000249.1_g000001 Rmu_sc0000405.1_g000016 Rmu_sc0005197.1_g000009 Rmu_sc0005197.1_g000015 Rmu_sc0036323.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010480 Rroxscaffold_1G00010530 Rroxscaffold_1G00010550 Rroxscaffold_1G00010560 Rroxscaffold_2G00076650 Rroxscaffold_5G00357250
rosa_rugosa	Rorug02G0592200 Rorug02G0592300 Rorug05G0407500 Rorug05G0407800
rosa_samantha	Rh2AG670700 Rh2BG682200 Rh2CG645000 Rh2DG695800 Rh5AG463200 Rh5AG463300 Rh5AG463400 Rh5BG481200 Rh5CG505400 Rh5CG505500 Rh5DG493300 Rh5DG493600 Rh5DG493700
rosa_wichuraiana	Rw2G055020 Rw5G043110 Rw5G043120 Rw5G043130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	237
AccBSI	CCGCTC	2 cut(s)	181, 209
AciI	CCGC	3 cut(s)	175, 181, 207
AclWI	GGATC	1 cut(s)	325
AcuI	CTGAAG	1 cut(s)	488
AfaI	GTAC	3 cut(s)	126, 135, 590
AfiI	CCNNNNNNNGG	2 cut(s)	314, 458
AgsI	TTSAA	1 cut(s)	522
AjnI	CCWGG	1 cut(s)	224
AluBI	AGCT	4 cut(s)	73, 347, 476, 525
AluI	AGCT	4 cut(s)	73, 347, 476, 525
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	1 cut(s)	296
AlwI	GGATC	1 cut(s)	325
AoxI	GGCC	1 cut(s)	248
ApeKI	GCWGC	1 cut(s)	447
AspS9I	GGNCC	1 cut(s)	184
AsuC2I	CCSGG	1 cut(s)	459
AsuHPI	GGTGA	3 cut(s)	54, 376, 505
AvaII	GGWCC	1 cut(s)	184
AxyI	CCTNAGG	1 cut(s)	313
BanI	GGYRCC	1 cut(s)	237
BauI	CACGAG	1 cut(s)	293
BbsI	GAAGAC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	459
BccI	CCATC	1 cut(s)	228
BceAI	ACGGC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	226
BclI	TGATCA	1 cut(s)	47
BcnI	CCSGG	1 cut(s)	459
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	1 cut(s)	623
BfmI	CTRYAG	1 cut(s)	540
BisI	GCNGC	1 cut(s)	448
BlsI	GCNGC	1 cut(s)	449
Bme1390I	CCNGG	2 cut(s)	226, 459
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	3 cut(s)	185, 186, 239
BmrFI	CCNGG	2 cut(s)	226, 459
BmsI	GCATC	3 cut(s)	63, 269, 368
BpiI	GAAGAC	1 cut(s)	96
BpmI	CTGGAG	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	492
BpuMI	CCSGG	1 cut(s)	459
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	2 cut(s)	7, 97
BsaWI	WCCGGW	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	2 cut(s)	314, 458
Bse1I	ACTGG	3 cut(s)	80, 122, 146
Bse21I	CCTNAGG	1 cut(s)	313
BseBI	CCWGG	1 cut(s)	226
BseDI	CCNNGG	2 cut(s)	7, 97
BseGI	GGATG	1 cut(s)	498
BseLI	CCNNNNNNNGG	2 cut(s)	314, 458
BseMII	CTCAG	2 cut(s)	122, 576
BseNI	ACTGG	3 cut(s)	80, 122, 146
BseXI	GCAGC	1 cut(s)	459
Bsh1285I	CGRYCG	1 cut(s)	392
BshFI	GGCC	1 cut(s)	250
BshNI	GGYRCC	1 cut(s)	237
BsiEI	CGRYCG	1 cut(s)	392
BsiHKAI	GWGCWC	1 cut(s)	19
BsiSI	CCGG	2 cut(s)	241, 459
BslFI	GGGAC	2 cut(s)	197, 379
BslI	CCNNNNNNNGG	2 cut(s)	314, 458
BsmAI	GTCTC	1 cut(s)	296
BsmFI	GGGAC	2 cut(s)	197, 379
BsnI	GGCC	1 cut(s)	250
Bso31I	GGTCTC	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	4 cut(s)	47, 111, 317, 389
BspACI	CCGC	3 cut(s)	175, 181, 207
BspANI	GGCC	1 cut(s)	250
BspCNI	CTCAG	2 cut(s)	121, 577
BspLI	GGNNCC	3 cut(s)	185, 186, 239
BspMAI	CTGCAG	1 cut(s)	544
BspPI	GGATC	1 cut(s)	325
BspQI	GCTCTTC	2 cut(s)	7, 55
BspT107I	GGYRCC	1 cut(s)	237
BspTNI	GGTCTC	1 cut(s)	296
BsrBI	CCGCTC	2 cut(s)	181, 209
BsrI	ACTGG	3 cut(s)	80, 122, 146
BssECI	CCNNGG	2 cut(s)	7, 97
BssMI	GATC	4 cut(s)	47, 111, 317, 389
BssSI	CACGAG	1 cut(s)	293
BssT1I	CCWWGG	1 cut(s)	97
Bst2BI	CACGAG	1 cut(s)	293
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	1 cut(s)	328
Bst6I	CTCTTC	2 cut(s)	7, 55
BstAPI	GCANNNNNTGC	2 cut(s)	432, 548
BstC8I	GCNNGC	5 cut(s)	67, 71, 94, 300, 428
BstDEI	CTNAG	5 cut(s)	108, 313, 338, 567, 585
BstF5I	GGATG	1 cut(s)	498
BstKTI	GATC	4 cut(s)	50, 114, 320, 392
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	4 cut(s)	47, 111, 317, 389
BstMCI	CGRYCG	1 cut(s)	392
BstMWI	GCNNNNNNNGC	3 cut(s)	432, 492, 548
BstNI	CCWGG	1 cut(s)	226
BstNSI	RCATGY	1 cut(s)	430
BstSCI	CCNGG	2 cut(s)	224, 457
BstSFI	CTRYAG	1 cut(s)	540
BstV1I	GCAGC	1 cut(s)	459
BstV2I	GAAGAC	1 cut(s)	96
Bsu36I	CCTNAGG	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	498
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	5 cut(s)	67, 71, 94, 300, 428
Cfr13I	GGNCC	1 cut(s)	184
Csp6I	GTAC	3 cut(s)	125, 134, 589
CviAII	CATG	4 cut(s)	198, 375, 427, 548
CviJI	RGCY	9 cut(s)	24, 73, 96, 250, 347, 450, 476, 525, 571
CviKI_1	RGCY	9 cut(s)	24, 73, 96, 250, 347, 450, 476, 525, 571
CviQI	GTAC	3 cut(s)	125, 134, 589
DdeI	CTNAG	5 cut(s)	108, 313, 338, 567, 585
DpnI	GATC	4 cut(s)	49, 113, 319, 391
DpnII	GATC	4 cut(s)	47, 111, 317, 389
Eam1104I	CTCTTC	2 cut(s)	7, 55
EarI	CTCTTC	2 cut(s)	7, 55
Eco130I	CCWWGG	1 cut(s)	97
Eco31I	GGTCTC	1 cut(s)	296
Eco32I	GATATC	1 cut(s)	464
Eco47I	GGWCC	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	488
Eco81I	CCTNAGG	1 cut(s)	313
EcoO109I	RGGNCCY	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	224
EcoRV	GATATC	1 cut(s)	464
EcoT14I	CCWWGG	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	97
FaeI	CATG	4 cut(s)	201, 378, 430, 551
FaiI	YATR	9 cut(s)	199, 304, 376, 399, 401, 428, 549, 580, 582
FaqI	GGGAC	2 cut(s)	197, 379
FatI	CATG	4 cut(s)	197, 374, 426, 547
FauI	CCCGC	3 cut(s)	168, 174, 214
FbaI	TGATCA	1 cut(s)	47
Fnu4HI	GCNGC	1 cut(s)	448
FokI	GGATG	1 cut(s)	485
Fsp4HI	GCNGC	1 cut(s)	448
FspBI	CTAG	1 cut(s)	623
GluI	GCNGC	1 cut(s)	448
GsuI	CTGGAG	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	250
HapII	CCGG	2 cut(s)	241, 459
Hin1II	CATG	4 cut(s)	201, 378, 430, 551
HinfI	GANTC	3 cut(s)	201, 414, 555
HpaII	CCGG	2 cut(s)	241, 459
HphI	GGTGA	3 cut(s)	54, 376, 505
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	5 cut(s)	59, 111, 116, 268, 371
Hpy188III	TCNNGA	1 cut(s)	27
Hpy8I	GTNNAC	1 cut(s)	331
Hpy99I	CGWCG	1 cut(s)	39
HpyAV	CCTTC	3 cut(s)	222, 512, 582
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4IV	ACGT	1 cut(s)	37
HpyCH4V	TGCA	3 cut(s)	302, 435, 542
HpyF10VI	GCNNNNNNNGC	3 cut(s)	432, 492, 548
HpyF3I	CTNAG	5 cut(s)	108, 313, 338, 567, 585
HpySE526I	ACGT	1 cut(s)	37
Hsp92II	CATG	4 cut(s)	201, 378, 430, 551
KflI	GGGWCCC	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	47
Kzo9I	GATC	4 cut(s)	47, 111, 317, 389
LguI	GCTCTTC	2 cut(s)	7, 55
LmnI	GCTCC	3 cut(s)	178, 214, 423
Lsp1109I	GCAGC	1 cut(s)	459
LweI	GCATC	3 cut(s)	63, 269, 368
MaeI	CTAG	1 cut(s)	623
MaeII	ACGT	1 cut(s)	37
MaeIII	GTNAC	1 cut(s)	511
MalI	GATC	4 cut(s)	49, 113, 319, 391
MbiI	CCGCTC	2 cut(s)	181, 209
MboI	GATC	4 cut(s)	47, 111, 317, 389
MboII	GAAGA	3 cut(s)	24, 72, 96
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	3 cut(s)	229, 361, 592
MlyI	GAGTC	1 cut(s)	549
MmeI	TCCRAC	2 cut(s)	217, 389
MnlI	CCTC	7 cut(s)	23, 160, 200, 281, 319, 392, 586
MseI	TTAA	2 cut(s)	75, 454
MspI	CCGG	2 cut(s)	241, 459
MspR9I	CCNGG	2 cut(s)	226, 459
MvaI	CCWGG	1 cut(s)	226
MwoI	GCNNNNNNNGC	3 cut(s)	432, 492, 548
NciI	CCSGG	1 cut(s)	459
NdeII	GATC	4 cut(s)	47, 111, 317, 389
NlaIII	CATG	4 cut(s)	201, 378, 430, 551
NlaIV	GGNNCC	3 cut(s)	185, 186, 239
NmuCI	GTSAC	1 cut(s)	511
NspI	RCATGY	1 cut(s)	430
PaeI	GCATGC	1 cut(s)	430
PciSI	GCTCTTC	2 cut(s)	7, 55
PfeI	GAWTC	2 cut(s)	201, 414
PkrI	GCNGC	1 cut(s)	449
Ple19I	CGATCG	1 cut(s)	392
PleI	GAGTC	1 cut(s)	549
PpsI	GAGTC	1 cut(s)	549
PpuMI	RGGWCCY	1 cut(s)	184
Psp5II	RGGWCCY	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	3 cut(s)	185, 186, 239
PspPI	GGNCC	1 cut(s)	184
PspPPI	RGGWCCY	1 cut(s)	184
PsrI	GAACNNNNNNTAC	2 cut(s)	314, 346
PstI	CTGCAG	1 cut(s)	544
PvuI	CGATCG	1 cut(s)	392
RsaI	GTAC	3 cut(s)	126, 135, 590
RsaNI	GTAC	3 cut(s)	125, 134, 589
SapI	GCTCTTC	2 cut(s)	7, 55
SaqAI	TTAA	2 cut(s)	75, 454
SatI	GCNGC	1 cut(s)	448
Sau3AI	GATC	4 cut(s)	47, 111, 317, 389
Sau96I	GGNCC	1 cut(s)	184
SchI	GAGTC	1 cut(s)	549
ScrFI	CCNGG	2 cut(s)	226, 459
SduI	GDGCHC	1 cut(s)	19
SfaNI	GCATC	3 cut(s)	63, 269, 368
SfcI	CTRYAG	1 cut(s)	540
SinI	GGWCC	1 cut(s)	184
SmlI	CTYRAG	1 cut(s)	471
SmoI	CTYRAG	1 cut(s)	471
SphI	GCATGC	1 cut(s)	430
Sse9I	AATT	3 cut(s)	229, 361, 592
SsiI	CCGC	3 cut(s)	175, 181, 207
SspMI	CTAG	1 cut(s)	623
StyD4I	CCNGG	2 cut(s)	224, 457
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	1 cut(s)	328
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	2 cut(s)	320, 466
TaqII	GACCGA	1 cut(s)	21
TasI	AATT	3 cut(s)	229, 361, 592
TatI	WGTACW	1 cut(s)	588
TfiI	GAWTC	2 cut(s)	201, 414
Tru1I	TTAA	2 cut(s)	75, 454
Tru9I	TTAA	2 cut(s)	75, 454
TscAI	CASTG	1 cut(s)	146
TseFI	GTSAC	1 cut(s)	511
TseI	GCWGC	1 cut(s)	447
Tsp45I	GTSAC	1 cut(s)	511
TspDTI	ATGAA	1 cut(s)	536
TspRI	CASTG	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	184
XceI	RCATGY	1 cut(s)	430
XspI	CTAG	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.