Rroxscaffold_1G00010560

acyltransferase-like protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
13320759 .. 13327238
6480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00010560.1

Sequence Viewer

Length: 1359 bp
ATGCGTGTGCAGGGGCGCATAGGTGCTGTAGGGGCAGGCGCACAGGTTCTTGCTGATGTCTTACCCATAGAAACAGTTCTGTGGAAGCTACAAATAATTAATTCAGCTTCTTCGTATGCCAATTCACGCCTCCATGCTGTCAAAGCTCAAACCCTGATACTCTCCAGTGGAAGAGATCCATTGCTACCTAATCAAGAAGAAGGTCTGAGACTCCAACAGCTGCTTGCAAATTGTGAGATCCGTACATTTGAAGACTCTGGCCATTTCCTCTTCTTGGAAGATGCTTTTGATTTGGTAACTGTCATCAAGCAGGTTGGTGTCTATCGTCGTTTAAAAGAACGAGATTTTGTTCTAGATTACATACCACCATCACCTTCTGAATTAAAAGATGTACTGGACAAATACAGATGGATTAGCATAATTACGAGCCCAGTGATGCTCTCAACTTTAGCAGATGGGAAGATAGTGAGGGGCTTTGCTGGGATTCCTTCAGAGGGTCCTGTAGTGTATGTCGGTTATCACATGTTACTGGGATTTGATACCTTTCCACTGGTAAAAGGGTTGTTGGAACTGAAAGACATCCATCTGCGAGGGATAGCACATCCAATGATTATCAAATTGAAACAAGAAAATTTAATTCAGTTGCCATTTTCCGATGATTTCAGACTTATGGGTGCTGTTCCTGTCTCGGGAAAATGCTTGTTCAAGCTACTCTCTACAAAGTCTCATATCCTGCTCTATCCTGGTGGAGTACGTGAGGCTCTTCACAGGAAGGGGGAAGCATATAAGCTATTTTGGCCTGAACAGTCAGAGTTTGTGAGGATGGCAGCTAGATTTGGAGCCAAAATCATACCCTTTGGTGCTGTTGGAGAAGATGACTGGGGTGACGTATTATTCGATTATGAAGATCAGATGAAAGTTCCTTTCCTCAAGAAATATATAGAAGAAATATCGGATGAAGCTGGAAAACTGAGGGCTACCATTGATGGGGAAGTAGGAAAACAAGCTGTACATTACCCAGGAATTCTACCGAAATTTCCTGGCCGGTTTTATTATTGTTTTGGGAAACCAATTGAAACAGAAGGGAGGAACCAGGAATTACGAGACAGGGAGAAGGCTCAGGAATTGTATTTACAAGTGAAATCAGAGGTTGAGAACTGCATTGCTTATTTGCAGAAAAGAGAGAGAGTGATCCTTACAGAAGCCTTGCATCTCGGCTACTCTTCCAGGCAAGACATGGCTTTACAGCTCAAGTTCCTGCATTTGACATCGATTAATGCTGTTAATGAGATTAGGGACCTCCGCCTATGTGCTCTGAACTCTGATGTGACCCTACACATTGTGGATTATAGTATATGA

Protein Analysis

452

Amino Acids

51.12

Weight (kDa)

6.62

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAGAT PF03982 214 - 294 5e-07 Diacylglycerol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 301
AciI CCGC 1 cut(s) 1303
AclWI GGATC 3 cut(s) 170, 232, 1186
AcoI YGGCCR 2 cut(s) 259, 1042
AcsI RAATTY 3 cut(s) 631, 1023, 1034
AcuI CTGAAG 1 cut(s) 474
AdeI CACNNNGTG 1 cut(s) 1342
AfaI GTAC 4 cut(s) 244, 393, 753, 1011
AfiI CCNNNNNNNGG 4 cut(s) 274, 494, 689, 987
AflIII ACRYGT 1 cut(s) 522
AgsI TTSAA 4 cut(s) 251, 622, 706, 1076
AjnI CCWGG 5 cut(s) 742, 1018, 1039, 1092, 1226
Alw21I GWGCWC 1 cut(s) 1315
Alw26I GTCTC 4 cut(s) 202, 691, 729, 1098
AlwI GGATC 3 cut(s) 170, 232, 1186
Ama87I CYCGRG 1 cut(s) 688
AoxI GGCC 3 cut(s) 259, 797, 1042
ApeKI GCWGC 2 cut(s) 220, 827
ApoI RAATTY 3 cut(s) 631, 1023, 1034
ArsI GACNNNNNNTTYG 2 cut(s) 878, 910
AseI ATTAAT 2 cut(s) 99, 1275
Asp700I GAANNNNTTC 1 cut(s) 75
AspLEI GCGC 2 cut(s) 18, 41
AspS9I GGNCC 2 cut(s) 497, 1297
AsuHPI GGTGA 2 cut(s) 363, 896
AvaI CYCGRG 1 cut(s) 688
AvaII GGWCC 2 cut(s) 497, 1297
BalI TGGCCA 1 cut(s) 261
BanII GRGCYC 1 cut(s) 431
BbsI GAAGAC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 1315
BbvI GCAGC 2 cut(s) 207, 839
BccI CCATC 6 cut(s) 376, 402, 449, 591, 817, 980
BciT130I CCWGG 5 cut(s) 744, 1020, 1041, 1094, 1228
BcoDI GTCTC 4 cut(s) 202, 691, 729, 1098
BfaI CTAG 2 cut(s) 353, 831
BfmI CTRYAG 2 cut(s) 27, 501
BfuAI ACCTGC 1 cut(s) 301
BisI GCNGC 2 cut(s) 221, 828
BlsI GCNGC 2 cut(s) 222, 829
Bme1390I CCNGG 5 cut(s) 744, 1020, 1041, 1094, 1228
Bme18I GGWCC 2 cut(s) 497, 1297
BmeT110I CYCGRG 1 cut(s) 688
BmgT120I GGNCC 2 cut(s) 497, 1297
BmiI GGNNCC 4 cut(s) 498, 841, 1091, 1298
BmrFI CCNGG 5 cut(s) 744, 1020, 1041, 1094, 1228
BmrI ACTGGG 3 cut(s) 425, 539, 889
BmsI GCATC 3 cut(s) 271, 426, 1219
BmuI ACTGGG 3 cut(s) 425, 539, 889
BpiI GAAGAC 1 cut(s) 258
BpmI CTGGAG 1 cut(s) 148
Bpu10I CCTNAGC 1 cut(s) 1119
BpuEI CTTGAG 2 cut(s) 914, 1235
Bsa29I ATCGAT 1 cut(s) 1271
BsaAI YACGTR 1 cut(s) 755
BsaJI CCNNGG 1 cut(s) 1018
Bsc4I CCNNNNNNNGG 4 cut(s) 274, 494, 689, 987
Bse118I RCCGGY 1 cut(s) 1044
Bse1I ACTGG 6 cut(s) 165, 399, 431, 534, 555, 884
Bse3DI GCAATG 2 cut(s) 179, 1161
BseBI CCWGG 5 cut(s) 744, 1020, 1041, 1094, 1228
BseCI ATCGAT 1 cut(s) 1271
BseDI CCNNGG 1 cut(s) 1018
BseGI GGATG 4 cut(s) 579, 601, 828, 961
BseLI CCNNNNNNNGG 4 cut(s) 274, 494, 689, 987
BseMI GCAATG 2 cut(s) 179, 1161
BseMII CTCAG 3 cut(s) 197, 962, 1133
BseNI ACTGG 6 cut(s) 165, 399, 431, 534, 555, 884
BseXI GCAGC 2 cut(s) 207, 839
BseYI CCCAGC 1 cut(s) 479
BsgI GTGCAG 1 cut(s) 29
BshFI GGCC 3 cut(s) 261, 799, 1044
BshVI ATCGAT 1 cut(s) 1271
BsiHKAI GWGCWC 1 cut(s) 1315
BsiHKCI CYCGRG 1 cut(s) 688
BsiSI CCGG 1 cut(s) 1045
BslFI GGGAC 1 cut(s) 1310
BslI CCNNNNNNNGG 4 cut(s) 274, 494, 689, 987
BsmAI GTCTC 4 cut(s) 202, 691, 729, 1098
BsmFI GGGAC 1 cut(s) 1310
BsnI GGCC 3 cut(s) 261, 799, 1044
BsoBI CYCGRG 1 cut(s) 688
Bsp1286I GDGCHC 2 cut(s) 431, 1315
Bsp1407I TGTACA 1 cut(s) 1009
Bsp143I GATC 4 cut(s) 175, 237, 907, 1191
BspACI CCGC 1 cut(s) 1303
BspANI GGCC 3 cut(s) 261, 799, 1044
BspCNI CTCAG 3 cut(s) 198, 963, 1132
BspDI ATCGAT 1 cut(s) 1271
BspLI GGNNCC 4 cut(s) 498, 841, 1091, 1298
BspMI ACCTGC 1 cut(s) 301
BspPI GGATC 3 cut(s) 170, 232, 1186
BspQI GCTCTTC 1 cut(s) 768
BsrDI GCAATG 2 cut(s) 179, 1161
BsrFI RCCGGY 1 cut(s) 1044
BsrGI TGTACA 1 cut(s) 1009
BsrI ACTGG 6 cut(s) 165, 399, 431, 534, 555, 884
BssAI RCCGGY 1 cut(s) 1044
BssECI CCNNGG 1 cut(s) 1018
BssMI GATC 4 cut(s) 175, 237, 907, 1191
Bst2UI CCWGG 5 cut(s) 744, 1020, 1041, 1094, 1228
Bst4CI ACNGT 3 cut(s) 76, 301, 807
Bst6I CTCTTC 4 cut(s) 166, 275, 768, 1228
BstAUI TGTACA 1 cut(s) 1009
BstBAI YACGTR 1 cut(s) 755
BstC8I GCNNGC 2 cut(s) 37, 225
BstDEI CTNAG 3 cut(s) 206, 971, 1119
BstF5I GGATG 4 cut(s) 579, 601, 828, 961
BstHHI GCGC 2 cut(s) 18, 41
BstKTI GATC 4 cut(s) 178, 240, 910, 1194
BstMAI GTCTC 4 cut(s) 202, 691, 729, 1098
BstMBI GATC 4 cut(s) 175, 237, 907, 1191
BstMWI GCNNNNNNNGC 3 cut(s) 32, 143, 796
BstNI CCWGG 5 cut(s) 744, 1020, 1041, 1094, 1228
BstNSI RCATGY 1 cut(s) 526
BstSCI CCNGG 5 cut(s) 742, 1018, 1039, 1092, 1226
BstSFI CTRYAG 2 cut(s) 27, 501
BstV1I GCAGC 2 cut(s) 207, 839
BstV2I GAAGAC 1 cut(s) 258
BstX2I RGATCY 2 cut(s) 175, 237
BstYI RGATCY 2 cut(s) 175, 237
Bsu15I ATCGAT 1 cut(s) 1271
BsuRI GGCC 3 cut(s) 261, 799, 1044
BsuTUI ATCGAT 1 cut(s) 1271
BtsCI GGATG 4 cut(s) 579, 601, 828, 961
BtsIMutI CAGTG 3 cut(s) 172, 438, 548
BveI ACCTGC 1 cut(s) 301
Cac8I GCNNGC 2 cut(s) 37, 225
CfoI GCGC 2 cut(s) 18, 41
Cfr10I RCCGGY 1 cut(s) 1044
Cfr13I GGNCC 2 cut(s) 497, 1297
ClaI ATCGAT 1 cut(s) 1271
Csp6I GTAC 4 cut(s) 243, 392, 752, 1010
CviAII CATG 3 cut(s) 134, 523, 1237
CviQI GTAC 4 cut(s) 243, 392, 752, 1010
DdeI CTNAG 3 cut(s) 206, 971, 1119
DpnI GATC 4 cut(s) 177, 239, 909, 1193
DpnII GATC 4 cut(s) 175, 237, 907, 1191
DraI TTTAAA 1 cut(s) 333
DraIII CACNNNGTG 1 cut(s) 1342
EaeI YGGCCR 2 cut(s) 259, 1042
Eam1104I CTCTTC 4 cut(s) 166, 275, 768, 1228
EarI CTCTTC 4 cut(s) 166, 275, 768, 1228
EciI GGCGGA 1 cut(s) 1292
Eco24I GRGCYC 1 cut(s) 431
Eco47I GGWCC 2 cut(s) 497, 1297
Eco57I CTGAAG 1 cut(s) 474
Eco88I CYCGRG 1 cut(s) 688
EcoO109I RGGNCCY 2 cut(s) 497, 1297
EcoRI GAATTC 1 cut(s) 1023
EcoRII CCWGG 5 cut(s) 742, 1018, 1039, 1092, 1226
EcoT38I GRGCYC 1 cut(s) 431
FaeI CATG 3 cut(s) 137, 526, 1240
FaqI GGGAC 1 cut(s) 1310
FatI CATG 3 cut(s) 133, 522, 1236
Fnu4HI GCNGC 2 cut(s) 221, 828
FokI GGATG 4 cut(s) 566, 588, 835, 968
FriOI GRGCYC 1 cut(s) 431
Fsp4HI GCNGC 2 cut(s) 221, 828
FspBI CTAG 2 cut(s) 353, 831
GlaI GCGC 2 cut(s) 17, 40
GluI GCNGC 2 cut(s) 221, 828
GsaI CCCAGC 1 cut(s) 483
GsuI CTGGAG 1 cut(s) 148
HaeIII GGCC 3 cut(s) 261, 799, 1044
HapII CCGG 1 cut(s) 1045
HhaI GCGC 2 cut(s) 18, 41
Hin1II CATG 3 cut(s) 137, 526, 1240
Hin6I GCGC 2 cut(s) 16, 39
HinP1I GCGC 2 cut(s) 16, 39
HinfI GANTC 3 cut(s) 210, 254, 484
HpaII CCGG 1 cut(s) 1045
HphI GGTGA 2 cut(s) 363, 896
Hpy188III TCNNGA 5 cut(s) 194, 353, 690, 931, 1121
Hpy99I CGWCG 1 cut(s) 330
HpyAV CCTTC 6 cut(s) 194, 384, 498, 766, 1076, 1108
HpyCH4III ACNGT 3 cut(s) 76, 301, 807
HpyCH4IV ACGT 2 cut(s) 754, 888
HpyCH4V TGCA 6 cut(s) 10, 227, 1161, 1174, 1210, 1261
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 143, 796
HpyF3I CTNAG 3 cut(s) 206, 971, 1119
HpySE526I ACGT 2 cut(s) 754, 888
Hsp92II CATG 3 cut(s) 137, 526, 1240
HspAI GCGC 2 cut(s) 16, 39
Kzo9I GATC 4 cut(s) 175, 237, 907, 1191
LguI GCTCTTC 1 cut(s) 768
LmnI GCTCC 1 cut(s) 839
Lsp1109I GCAGC 2 cut(s) 207, 839
LweI GCATC 3 cut(s) 271, 426, 1219
MaeI CTAG 2 cut(s) 353, 831
MaeII ACGT 2 cut(s) 754, 888
MaeIII GTNAC 4 cut(s) 295, 525, 884, 1327
MalI GATC 4 cut(s) 177, 239, 909, 1193
MboI GATC 4 cut(s) 175, 237, 907, 1191
MfeI CAATTG 1 cut(s) 1071
MflI RGATCY 2 cut(s) 175, 237
MhlI GDGCHC 2 cut(s) 431, 1315
MlsI TGGCCA 1 cut(s) 261
MluNI TGGCCA 1 cut(s) 261
MlyI GAGTC 2 cut(s) 204, 248
MmeI TCCRAC 3 cut(s) 238, 546, 847
Mox20I TGGCCA 1 cut(s) 261
MroXI GAANNNNTTC 1 cut(s) 75
MscI TGGCCA 1 cut(s) 261
MseI TTAA 6 cut(s) 99, 332, 383, 635, 1275, 1284
Msp20I TGGCCA 1 cut(s) 261
MspA1I CMGCKG 1 cut(s) 220
MspI CCGG 1 cut(s) 1045
MspR9I CCNGG 5 cut(s) 744, 1020, 1041, 1094, 1228
MunI CAATTG 1 cut(s) 1071
MvaI CCWGG 5 cut(s) 744, 1020, 1041, 1094, 1228
MwoI GCNNNNNNNGC 3 cut(s) 32, 143, 796
NdeII GATC 4 cut(s) 175, 237, 907, 1191
NlaIII CATG 3 cut(s) 137, 526, 1240
NlaIV GGNNCC 4 cut(s) 498, 841, 1091, 1298
NmeAIII GCCGAG 1 cut(s) 1194
NmuCI GTSAC 2 cut(s) 884, 1327
NspI RCATGY 1 cut(s) 526
PciI ACATGT 1 cut(s) 522
PciSI GCTCTTC 1 cut(s) 768
PcsI WCGNNNNNNNCGW 1 cut(s) 894
PdmI GAANNNNTTC 1 cut(s) 75
PfeI GAWTC 1 cut(s) 484
PkrI GCNGC 2 cut(s) 222, 829
PleI GAGTC 2 cut(s) 204, 248
PpsI GAGTC 2 cut(s) 204, 248
Ppu21I YACGTR 1 cut(s) 755
PpuMI RGGWCCY 2 cut(s) 497, 1297
PscI ACATGT 1 cut(s) 522
PshBI ATTAAT 2 cut(s) 99, 1275
Psp5II RGGWCCY 2 cut(s) 497, 1297
Psp6I CCWGG 5 cut(s) 742, 1018, 1039, 1092, 1226
PspFI CCCAGC 1 cut(s) 479
PspGI CCWGG 5 cut(s) 742, 1018, 1039, 1092, 1226
PspN4I GGNNCC 4 cut(s) 498, 841, 1091, 1298
PspPI GGNCC 2 cut(s) 497, 1297
PspPPI RGGWCCY 2 cut(s) 497, 1297
PsuI RGATCY 2 cut(s) 175, 237
PvuII CAGCTG 1 cut(s) 220
RsaI GTAC 4 cut(s) 244, 393, 753, 1011
RsaNI GTAC 4 cut(s) 243, 392, 752, 1010
SapI GCTCTTC 1 cut(s) 768
SaqAI TTAA 6 cut(s) 99, 332, 383, 635, 1275, 1284
SatI GCNGC 2 cut(s) 221, 828
Sau3AI GATC 4 cut(s) 175, 237, 907, 1191
Sau96I GGNCC 2 cut(s) 497, 1297
SchI GAGTC 2 cut(s) 204, 248
ScrFI CCNGG 5 cut(s) 744, 1020, 1041, 1094, 1228
SduI GDGCHC 2 cut(s) 431, 1315
SfaNI GCATC 3 cut(s) 271, 426, 1219
SfcI CTRYAG 2 cut(s) 27, 501
SinI GGWCC 2 cut(s) 497, 1297
SmlI CTYRAG 2 cut(s) 929, 1250
SmoI CTYRAG 2 cut(s) 929, 1250
SsiI CCGC 1 cut(s) 1303
SspMI CTAG 2 cut(s) 353, 831
StyD4I CCNGG 5 cut(s) 742, 1018, 1039, 1092, 1226
TaaI ACNGT 3 cut(s) 76, 301, 807
TaiI ACGT 2 cut(s) 757, 891
TaqI TCGA 2 cut(s) 897, 1271
TatI WGTACW 2 cut(s) 391, 1009
TfiI GAWTC 1 cut(s) 484
Tru1I TTAA 6 cut(s) 99, 332, 383, 635, 1275, 1284
Tru9I TTAA 6 cut(s) 99, 332, 383, 635, 1275, 1284
TscAI CASTG 3 cut(s) 172, 438, 555
TseFI GTSAC 2 cut(s) 884, 1327
TseI GCWGC 2 cut(s) 220, 827
Tsp45I GTSAC 2 cut(s) 884, 1327
TspDTI ATGAA 3 cut(s) 918, 929, 972
TspGWI ACGGA 1 cut(s) 230
TspRI CASTG 3 cut(s) 172, 438, 555
VpaK11BI GGWCC 2 cut(s) 497, 1297
VspI ATTAAT 2 cut(s) 99, 1275
XapI RAATTY 3 cut(s) 631, 1023, 1034
XbaI TCTAGA 1 cut(s) 352
XceI RCATGY 1 cut(s) 526
XcmI CCANNNNNNNNNTGG 1 cut(s) 1234
XmnI GAANNNNTTC 1 cut(s) 75
XspI CTAG 2 cut(s) 353, 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.