Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000740

Physical Location & Seq

Genomic Coordinates Forward (+)

71410301 .. 71412291

Gene Structure 1991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0592200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGATCACAGTGAGACCCAAGCAGGAGGAAATGGAGGTCCGATTCGCAACGAAGCCGAAGGCGGCGGCGTTGGTGGCTTACGGCACAGACGACGACAGTGCCGGGTCGTCGGAGGAGATGGAGTCGCCGAGGTCGGTGCAGGGGAGATGGAGGAGGAGGAGGTCGTCGTCGGAGAATAAGAAGAAGGCGGCGTACGTGCACAGCCAGATCTTGAGGATCAGAGAGGAGGACTCGCAGCTCGGCGAGAGCTACTTTGGCGCGAAAGAGAAGGCCGCTCACGCCGTGGCTTCGCGCGTCGACGTTGTGATTTTGGCCCGGCCGGTCTTGCCTTCCTCGCCGCTCAAGAACACCGTCAACGCTTTGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010287 GO:0016101 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019432 GO:0033306 GO:0034308 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576 GO:1901615 GO:1903173

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 DAGAT Hydrolase_4

Protein Analysis

122

Amino Acids

13.56

Weight (kDa)

9.69

Isoelectric Point (pI)

84.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02030 AT3G02030 AT3G26820 AT3G26820 AT3G26840 AT5G41120 AT5G41120 AT5G41120 AT5G41130 AT5G41130 AT5G41130
fragaria_vesca	FvH4_3g35400 FvH4_3g39220 FvH4_3g39220 FvH4_3g39270 FvH4_3g39280 FvH4_3g39280 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060
malus_domestica	MD09G1005800.v1.1 MD17G1009900.v1.1
prunus_persica	Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1
pyrus_communis	pycom111g00420
rosa_chinensis	RchiOBHm_Chr2g0176241 RchiOBHm_Chr5g0070671 RchiOBHm_Chr5g0070681 RchiOBHm_Chr5g0070691
rosa_laevigata	RLG00000022394 RLG00000036149 RLG00000036150 RLG00000036152
rosa_multiflora	Rmu_co8466433.1_g000001 Rmu_sc0000249.1_g000001 Rmu_sc0000405.1_g000016 Rmu_sc0005197.1_g000009 Rmu_sc0005197.1_g000015 Rmu_sc0036323.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010480 Rroxscaffold_1G00010530 Rroxscaffold_1G00010550 Rroxscaffold_1G00010560 Rroxscaffold_2G00076650 Rroxscaffold_5G00357250
rosa_rugosa	Rorug02G0592200 Rorug02G0592300 Rorug05G0407500 Rorug05G0407800
rosa_samantha	Rh2AG670700 Rh2BG682200 Rh2CG645000 Rh2DG695800 Rh5AG463200 Rh5AG463300 Rh5AG463400 Rh5BG481200 Rh5CG505400 Rh5CG505500 Rh5DG493300 Rh5DG493600 Rh5DG493700
rosa_wichuraiana	Rw2G055020 Rw5G043110 Rw5G043120 Rw5G043130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	275, 340
AccI	GTMKAC	1 cut(s)	297
AccII	CGCG	3 cut(s)	260, 292, 294
AciI	CCGC	5 cut(s)	62, 65, 188, 273, 338
AclWI	GGATC	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	317
AdeI	CACNNNGTG	1 cut(s)	283
AfaI	GTAC	1 cut(s)	194
AluBI	AGCT	2 cut(s)	238, 249
AluI	AGCT	2 cut(s)	238, 249
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	1 cut(s)	7
Alw44I	GTGCAC	1 cut(s)	197
AlwI	GGATC	1 cut(s)	224
AoxI	GGCC	3 cut(s)	270, 312, 317
ApaLI	GTGCAC	1 cut(s)	197
ApeKI	GCWGC	1 cut(s)	235
AspLEI	GCGC	2 cut(s)	260, 294
AspS9I	GGNCC	2 cut(s)	37, 313
AsuC2I	CCSGG	2 cut(s)	103, 316
AvaII	GGWCC	1 cut(s)	37
BaeGI	GKGCMC	1 cut(s)	201
BarI	GAAGNNNNNNTAC	2 cut(s)	176, 208
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	2 cut(s)	112, 141
BceAI	ACGGC	2 cut(s)	97, 266
BcgI	CGANNNNNNTGC	4 cut(s)	80, 114, 118, 152
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	2 cut(s)	103, 316
BcoDI	GTCTC	1 cut(s)	7
BglII	AGATCT	1 cut(s)	207
BisI	GCNGC	6 cut(s)	63, 66, 189, 236, 273, 338
BlsI	GCNGC	6 cut(s)	64, 67, 190, 237, 274, 339
Bme1390I	CCNGG	2 cut(s)	103, 316
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	2 cut(s)	37, 313
BmrFI	CCNGG	2 cut(s)	103, 316
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
BpuEI	CTTGAG	2 cut(s)	232, 326
BpuMI	CCSGG	2 cut(s)	103, 316
BsaAI	YACGTR	1 cut(s)	196
BsaI	GGTCTC	1 cut(s)	7
BsaJI	CCNNGG	2 cut(s)	128, 282
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bse118I	RCCGGY	1 cut(s)	319
BseDI	CCNNGG	2 cut(s)	128, 282
BseRI	GAGGAG	5 cut(s)	128, 166, 169, 172, 239
BseSI	GKGCMC	1 cut(s)	201
BseX3I	CGGCCG	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	247
BsgI	GTGCAG	1 cut(s)	158
Bsh1236I	CGCG	3 cut(s)	260, 292, 294
Bsh1285I	CGRYCG	1 cut(s)	320
BshFI	GGCC	3 cut(s)	272, 314, 319
BsiEI	CGRYCG	1 cut(s)	320
BsiHKAI	GWGCWC	1 cut(s)	201
BsiSI	CCGG	3 cut(s)	102, 316, 320
BsiWI	CGTACG	1 cut(s)	192
BsmAI	GTCTC	1 cut(s)	7
BsnI	GGCC	3 cut(s)	272, 314, 319
Bso31I	GGTCTC	1 cut(s)	7
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	3, 207, 216
BspACI	CCGC	5 cut(s)	62, 65, 188, 273, 338
BspANI	GGCC	3 cut(s)	272, 314, 319
BspFNI	CGCG	3 cut(s)	260, 292, 294
BspPI	GGATC	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	7
BsrBI	CCGCTC	2 cut(s)	275, 340
BsrFI	RCCGGY	1 cut(s)	319
BssAI	RCCGGY	1 cut(s)	319
BssECI	CCNNGG	2 cut(s)	128, 282
BssMI	GATC	3 cut(s)	3, 207, 216
Bst4CI	ACNGT	3 cut(s)	10, 98, 352
BstBAI	YACGTR	1 cut(s)	196
BstDSI	CCRYGG	1 cut(s)	282
BstFNI	CGCG	3 cut(s)	260, 292, 294
BstHHI	GCGC	2 cut(s)	260, 294
BstKTI	GATC	3 cut(s)	6, 210, 219
BstMAI	GTCTC	1 cut(s)	7
BstMBI	GATC	3 cut(s)	3, 207, 216
BstMCI	CGRYCG	1 cut(s)	320
BstMWI	GCNNNNNNNGC	5 cut(s)	74, 255, 278, 325, 334
BstSCI	CCNGG	2 cut(s)	101, 314
BstSLI	GKGCMC	1 cut(s)	201
BstUI	CGCG	3 cut(s)	260, 292, 294
BstV1I	GCAGC	1 cut(s)	247
BstX2I	RGATCY	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	207
BstZI	CGGCCG	1 cut(s)	317
BsuRI	GGCC	3 cut(s)	272, 314, 319
BtgI	CCRYGG	1 cut(s)	282
BtsIMutI	CAGTG	3 cut(s)	15, 103, 364
CfoI	GCGC	2 cut(s)	260, 294
Cfr10I	RCCGGY	1 cut(s)	319
Cfr13I	GGNCC	2 cut(s)	37, 313
CseI	GACGC	1 cut(s)	283
Csp6I	GTAC	1 cut(s)	193
CviJI	RGCY	9 cut(s)	55, 77, 204, 238, 249, 272, 287, 314, 319
CviKI_1	RGCY	9 cut(s)	55, 77, 204, 238, 249, 272, 287, 314, 319
CviQI	GTAC	1 cut(s)	193
DpnI	GATC	3 cut(s)	5, 209, 218
DpnII	GATC	3 cut(s)	3, 207, 216
DraIII	CACNNNGTG	1 cut(s)	283
EaeI	YGGCCR	1 cut(s)	317
EagI	CGGCCG	1 cut(s)	317
EclXI	CGGCCG	1 cut(s)	317
Eco31I	GGTCTC	1 cut(s)	7
Eco47I	GGWCC	1 cut(s)	37
Eco52I	CGGCCG	1 cut(s)	317
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	6 cut(s)	63, 66, 189, 236, 273, 338
Fsp4HI	GCNGC	6 cut(s)	63, 66, 189, 236, 273, 338
GlaI	GCGC	2 cut(s)	259, 293
GluI	GCNGC	6 cut(s)	63, 66, 189, 236, 273, 338
HaeIII	GGCC	3 cut(s)	272, 314, 319
HapII	CCGG	3 cut(s)	102, 316, 320
HgaI	GACGC	1 cut(s)	283
HhaI	GCGC	2 cut(s)	260, 294
Hin6I	GCGC	2 cut(s)	258, 292
HinP1I	GCGC	2 cut(s)	258, 292
HincII	GTYRAC	2 cut(s)	298, 355
HindII	GTYRAC	2 cut(s)	298, 355
HinfI	GANTC	3 cut(s)	42, 122, 230
HpaII	CCGG	3 cut(s)	102, 316, 320
Hpy166II	GTNNAC	3 cut(s)	199, 298, 355
Hpy188I	TCNGA	4 cut(s)	41, 112, 172, 221
Hpy188III	TCNNGA	2 cut(s)	211, 343
Hpy8I	GTNNAC	3 cut(s)	199, 298, 355
Hpy99I	CGWCG	6 cut(s)	95, 112, 169, 172, 299, 302
HpyAV	CCTTC	4 cut(s)	52, 178, 262, 339
HpyCH4III	ACNGT	3 cut(s)	10, 98, 352
HpyCH4IV	ACGT	2 cut(s)	195, 300
HpyCH4V	TGCA	3 cut(s)	139, 199, 364
HpyF10VI	GCNNNNNNNGC	5 cut(s)	74, 255, 278, 325, 334
HpySE526I	ACGT	2 cut(s)	195, 300
HspAI	GCGC	2 cut(s)	258, 292
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 207, 216
LpnPI	CCDG	6 cut(s)	8, 115, 125, 218, 329, 333
Lsp1109I	GCAGC	1 cut(s)	247
MaeII	ACGT	2 cut(s)	195, 300
MalI	GATC	3 cut(s)	5, 209, 218
MbiI	CCGCTC	2 cut(s)	275, 340
MboI	GATC	3 cut(s)	3, 207, 216
MboII	GAAGA	1 cut(s)	193
MflI	RGATCY	1 cut(s)	207
MhlI	GDGCHC	1 cut(s)	201
MlyI	GAGTC	2 cut(s)	131, 224
MmeI	TCCRAC	2 cut(s)	90, 150
MspI	CCGG	3 cut(s)	102, 316, 320
MspR9I	CCNGG	2 cut(s)	103, 316
MvnI	CGCG	3 cut(s)	260, 292, 294
MwoI	GCNNNNNNNGC	5 cut(s)	74, 255, 278, 325, 334
NciI	CCSGG	2 cut(s)	103, 316
NdeII	GATC	3 cut(s)	3, 207, 216
NmeAIII	GCCGAG	2 cut(s)	153, 219
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	42
Pfl23II	CGTACG	1 cut(s)	192
PkrI	GCNGC	6 cut(s)	64, 67, 190, 237, 274, 339
PleI	GAGTC	2 cut(s)	130, 224
PpsI	GAGTC	2 cut(s)	130, 224
Ppu21I	YACGTR	1 cut(s)	196
PspLI	CGTACG	1 cut(s)	192
PspPI	GGNCC	2 cut(s)	37, 313
PsuI	RGATCY	1 cut(s)	207
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
SalI	GTCGAC	1 cut(s)	296
SatI	GCNGC	6 cut(s)	63, 66, 189, 236, 273, 338
Sau3AI	GATC	3 cut(s)	3, 207, 216
Sau96I	GGNCC	2 cut(s)	37, 313
SchI	GAGTC	2 cut(s)	131, 224
ScrFI	CCNGG	2 cut(s)	103, 316
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	7 cut(s)	39, 134, 164, 198, 240, 251, 303
SgrDI	CGTCGACG	1 cut(s)	296
SinI	GGWCC	1 cut(s)	37
SmlI	CTYRAG	2 cut(s)	211, 341
SmoI	CTYRAG	2 cut(s)	211, 341
SsiI	CCGC	5 cut(s)	62, 65, 188, 273, 338
StyD4I	CCNGG	2 cut(s)	101, 314
TaaI	ACNGT	3 cut(s)	10, 98, 352
TaiI	ACGT	2 cut(s)	198, 303
TaqI	TCGA	1 cut(s)	297
TauI	GCSGC	5 cut(s)	65, 68, 191, 275, 340
TfiI	GAWTC	1 cut(s)	42
TscAI	CASTG	2 cut(s)	15, 103
TseI	GCWGC	1 cut(s)	235
TspRI	CASTG	2 cut(s)	15, 103
VneI	GTGCAC	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.