Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000740

Physical Location & Seq

Genomic Coordinates Forward (+)

13283379 .. 13286370

Gene Structure 2992 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00010530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGAGCCCAGTGATGCTCTCAACTTTAGCAGATGGGACGATAGTGTGGGGCTTTGCTGGGATTCCATCAGAGGGTCCTGTAGTGTATGTCGGTTATCACATGTTACTGGGATTTGATATCGTTCCATTGGTAGCACAGTTGTGGGAACAAAAAGGCATCCATCTGCGAGGGATAGCAAATCCAATGATGTTTATGAAATTGAAACAAGGAAATTTAGTTGAGTTACCCTTTTCCGACTATTTCAGACTGATGGGTGCTGTTCCTGTCTCGGGAAAAAACTTTTCAAGCTACTCTCTACAAGTCTCATATCCCTACTATATCCTGGTGGAATTCGTGAGGCTCTTCACAGGAAGTTTTGCAAAAGTCAACTTTCACTTTCCCGGGGAAGCATACAAGTTATTCTGGCCAGAACGGTCAGAGTTTGTGAGGATGGCAGCTAGATTTGGAGCAAAAATCGTACCTGTTGGTACAGTTGGAGAAGATGATTTTTTTGACATATTACTCGATTATGAAGACCAGATGAAAATTCCTTTCCTCAAGAAATATATAGATGCATTATCGGATGAAGTTGGAAAGCTGAGGACTACCGTTGATGGGGAGGTAGGAAACCAAGATGTACACTTCCCAGGAATTCTACCAAAATATCCCGGCCGGTTTTATTATTATTTTGGGAAAACAATTGAAACAGACGGGAGGAAGCAGGAATTACGAGACAGGGAGAAAGCTCAAGAGTTGTATTTACAAGTGAAATCAGAGGTTGAGAACTGCATTGCTTATTTGCAGGAAAAAAGAGAGAGTGATCCTTACAGAAGCCTTGTGTCTCGGCTACTCTTCCAGGCCAGACATGGCTTTACATCTGAAGTTCCTGCATTTGACCTCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010287 GO:0016101 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019432 GO:0033306 GO:0034308 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576 GO:1901615 GO:1903173

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 DAGAT Hydrolase_4

Protein Analysis

294

Amino Acids

33.67

Weight (kDa)

5.66

Isoelectric Point (pI)

38.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02030 AT3G02030 AT3G26820 AT3G26820 AT3G26840 AT5G41120 AT5G41120 AT5G41120 AT5G41130 AT5G41130 AT5G41130
fragaria_vesca	FvH4_3g35400 FvH4_3g39220 FvH4_3g39220 FvH4_3g39270 FvH4_3g39280 FvH4_3g39280 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060
malus_domestica	MD09G1005800.v1.1 MD17G1009900.v1.1
prunus_persica	Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1
pyrus_communis	pycom111g00420
rosa_chinensis	RchiOBHm_Chr2g0176241 RchiOBHm_Chr5g0070671 RchiOBHm_Chr5g0070681 RchiOBHm_Chr5g0070691
rosa_laevigata	RLG00000022394 RLG00000036149 RLG00000036150 RLG00000036152
rosa_multiflora	Rmu_co8466433.1_g000001 Rmu_sc0000249.1_g000001 Rmu_sc0000405.1_g000016 Rmu_sc0005197.1_g000009 Rmu_sc0005197.1_g000015 Rmu_sc0036323.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010480 Rroxscaffold_1G00010530 Rroxscaffold_1G00010550 Rroxscaffold_1G00010560 Rroxscaffold_2G00076650 Rroxscaffold_5G00357250
rosa_rugosa	Rorug02G0592200 Rorug02G0592300 Rorug05G0407500 Rorug05G0407800
rosa_samantha	Rh2AG670700 Rh2BG682200 Rh2CG645000 Rh2DG695800 Rh5AG463200 Rh5AG463300 Rh5AG463400 Rh5BG481200 Rh5CG505400 Rh5CG505500 Rh5DG493300 Rh5DG493600 Rh5DG493700
rosa_wichuraiana	Rw2G055020 Rw5G043110 Rw5G043120 Rw5G043130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	794
AcoI	YGGCCR	2 cut(s)	404, 649
AcsI	RAATTY	4 cut(s)	211, 329, 525, 630
AcuI	CTGAAG	1 cut(s)	879
AfaI	GTAC	3 cut(s)	459, 469, 618
AfiI	CCNNNNNNNGG	3 cut(s)	71, 269, 594
AflIII	ACRYGT	1 cut(s)	99
AgsI	TTSAA	3 cut(s)	202, 285, 683
AjnI	CCWGG	3 cut(s)	321, 625, 834
AleI	CACNNNNGTG	1 cut(s)	139
AluBI	AGCT	4 cut(s)	288, 437, 577, 725
AluI	AGCT	4 cut(s)	288, 437, 577, 725
Alw26I	GTCTC	4 cut(s)	271, 307, 705, 825
AlwI	GGATC	1 cut(s)	794
Ama87I	CYCGRG	2 cut(s)	268, 380
AoxI	GGCC	3 cut(s)	404, 649, 837
ApeKI	GCWGC	1 cut(s)	434
ApoI	RAATTY	4 cut(s)	211, 329, 525, 630
AspS9I	GGNCC	1 cut(s)	74
AsuC2I	CCSGG	3 cut(s)	381, 382, 648
AvaI	CYCGRG	2 cut(s)	268, 380
AvaII	GGWCC	1 cut(s)	74
BalI	TGGCCA	1 cut(s)	406
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	519
BbvCI	CCTCAGC	1 cut(s)	578
BbvI	GCAGC	1 cut(s)	446
BccI	CCATC	6 cut(s)	26, 73, 168, 244, 424, 587
BciT130I	CCWGG	3 cut(s)	323, 627, 836
BcnI	CCSGG	3 cut(s)	381, 382, 648
BcoDI	GTCTC	4 cut(s)	271, 307, 705, 825
BfaI	CTAG	1 cut(s)	438
BfmI	CTRYAG	1 cut(s)	78
BisI	GCNGC	1 cut(s)	435
BlsI	GCNGC	1 cut(s)	436
Bme1390I	CCNGG	6 cut(s)	323, 381, 382, 627, 648, 836
Bme18I	GGWCC	1 cut(s)	74
BmeT110I	CYCGRG	2 cut(s)	268, 380
BmgT120I	GGNCC	1 cut(s)	74
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	6 cut(s)	323, 381, 382, 627, 648, 836
BmrI	ACTGGG	1 cut(s)	116
BmsI	GCATC	3 cut(s)	3, 165, 541
BmuI	ACTGGG	1 cut(s)	116
BpiI	GAAGAC	1 cut(s)	519
Bpu10I	CCTNAGC	1 cut(s)	578
BpuEI	CTTGAG	2 cut(s)	521, 711
BpuMI	CCSGG	3 cut(s)	381, 382, 648
BsaJI	CCNNGG	3 cut(s)	380, 381, 625
Bsc4I	CCNNNNNNNGG	3 cut(s)	71, 269, 594
Bse118I	RCCGGY	1 cut(s)	651
Bse1I	ACTGG	2 cut(s)	8, 111
Bse3DI	GCAATG	1 cut(s)	768
BseBI	CCWGG	3 cut(s)	323, 627, 836
BseDI	CCNNGG	3 cut(s)	380, 381, 625
BseGI	GGATG	3 cut(s)	156, 435, 568
BseLI	CCNNNNNNNGG	3 cut(s)	71, 269, 594
BseMI	GCAATG	1 cut(s)	768
BseMII	CTCAG	1 cut(s)	569
BseNI	ACTGG	2 cut(s)	8, 111
BseX3I	CGGCCG	1 cut(s)	649
BseXI	GCAGC	1 cut(s)	446
BseYI	CCCAGC	1 cut(s)	56
Bsh1285I	CGRYCG	1 cut(s)	652
BshFI	GGCC	3 cut(s)	406, 651, 839
BsiEI	CGRYCG	1 cut(s)	652
BsiHKCI	CYCGRG	2 cut(s)	268, 380
BsiSI	CCGG	3 cut(s)	381, 648, 652
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	3 cut(s)	71, 269, 594
BsmAI	GTCTC	4 cut(s)	271, 307, 705, 825
BsmFI	GGGAC	1 cut(s)	49
BsnI	GGCC	3 cut(s)	406, 651, 839
BsoBI	CYCGRG	2 cut(s)	268, 380
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp1407I	TGTACA	1 cut(s)	616
Bsp143I	GATC	1 cut(s)	799
BspANI	GGCC	3 cut(s)	406, 651, 839
BspCNI	CTCAG	1 cut(s)	570
BspLI	GGNNCC	1 cut(s)	75
BspPI	GGATC	1 cut(s)	794
BspQI	GCTCTTC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	768
BsrFI	RCCGGY	1 cut(s)	651
BsrGI	TGTACA	1 cut(s)	616
BsrI	ACTGG	2 cut(s)	8, 111
BssAI	RCCGGY	1 cut(s)	651
BssECI	CCNNGG	3 cut(s)	380, 381, 625
BssMI	GATC	1 cut(s)	799
Bst2UI	CCWGG	3 cut(s)	323, 627, 836
Bst4CI	ACNGT	4 cut(s)	138, 414, 472, 589
Bst6I	CTCTTC	2 cut(s)	347, 836
BstAUI	TGTACA	1 cut(s)	616
BstDEI	CTNAG	1 cut(s)	578
BstF5I	GGATG	3 cut(s)	156, 435, 568
BstKTI	GATC	1 cut(s)	802
BstMAI	GTCTC	4 cut(s)	271, 307, 705, 825
BstMBI	GATC	1 cut(s)	799
BstMCI	CGRYCG	1 cut(s)	652
BstNI	CCWGG	3 cut(s)	323, 627, 836
BstNSI	RCATGY	1 cut(s)	103
BstSCI	CCNGG	6 cut(s)	321, 379, 380, 625, 646, 834
BstSFI	CTRYAG	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	446
BstV2I	GAAGAC	1 cut(s)	519
BstZI	CGGCCG	1 cut(s)	649
BsuRI	GGCC	3 cut(s)	406, 651, 839
BtsCI	GGATG	3 cut(s)	156, 435, 568
BtsIMutI	CAGTG	1 cut(s)	15
Cfr10I	RCCGGY	1 cut(s)	651
Cfr13I	GGNCC	1 cut(s)	74
Cfr9I	CCCGGG	1 cut(s)	380
Csp6I	GTAC	3 cut(s)	458, 468, 617
CviAII	CATG	2 cut(s)	100, 845
CviQI	GTAC	3 cut(s)	458, 468, 617
DdeI	CTNAG	1 cut(s)	578
DpnI	GATC	1 cut(s)	801
DpnII	GATC	1 cut(s)	799
EaeI	YGGCCR	2 cut(s)	404, 649
EagI	CGGCCG	1 cut(s)	649
Eam1104I	CTCTTC	2 cut(s)	347, 836
EarI	CTCTTC	2 cut(s)	347, 836
EclXI	CGGCCG	1 cut(s)	649
Eco24I	GRGCYC	1 cut(s)	8
Eco32I	GATATC	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	74
Eco52I	CGGCCG	1 cut(s)	649
Eco57I	CTGAAG	1 cut(s)	879
Eco88I	CYCGRG	2 cut(s)	268, 380
EcoO109I	RGGNCCY	1 cut(s)	74
EcoRI	GAATTC	2 cut(s)	329, 630
EcoRII	CCWGG	3 cut(s)	321, 625, 834
EcoRV	GATATC	1 cut(s)	118
EcoT22I	ATGCAT	1 cut(s)	556
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	2 cut(s)	103, 848
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	2 cut(s)	99, 844
Fnu4HI	GCNGC	1 cut(s)	435
FokI	GGATG	3 cut(s)	143, 442, 575
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	435
FspBI	CTAG	1 cut(s)	438
GluI	GCNGC	1 cut(s)	435
GsaI	CCCAGC	1 cut(s)	60
HaeIII	GGCC	3 cut(s)	406, 651, 839
HapII	CCGG	3 cut(s)	381, 648, 652
Hin1II	CATG	2 cut(s)	103, 848
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HinfI	GANTC	1 cut(s)	61
HpaII	CCGG	3 cut(s)	381, 648, 652
Hpy166II	GTNNAC	2 cut(s)	367, 619
Hpy188I	TCNGA	7 cut(s)	70, 235, 245, 418, 562, 754, 859
Hpy188III	TCNNGA	4 cut(s)	270, 334, 538, 728
Hpy8I	GTNNAC	2 cut(s)	367, 619
HpyCH4III	ACNGT	4 cut(s)	138, 414, 472, 589
HpyCH4V	TGCA	5 cut(s)	359, 554, 768, 781, 869
HpyF3I	CTNAG	1 cut(s)	578
Hsp92II	CATG	2 cut(s)	103, 848
Kzo9I	GATC	1 cut(s)	799
LguI	GCTCTTC	1 cut(s)	347
LmnI	GCTCC	1 cut(s)	446
Lsp1109I	GCAGC	1 cut(s)	446
LweI	GCATC	3 cut(s)	3, 165, 541
MaeI	CTAG	1 cut(s)	438
MaeIII	GTNAC	2 cut(s)	102, 222
MalI	GATC	1 cut(s)	801
MboI	GATC	1 cut(s)	799
MboII	GAAGA	4 cut(s)	334, 491, 524, 823
MfeI	CAATTG	1 cut(s)	678
MhlI	GDGCHC	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	406
MluCI	AATT	7 cut(s)	197, 211, 329, 525, 630, 678, 704
MluNI	TGGCCA	1 cut(s)	406
MmeI	TCCRAC	3 cut(s)	258, 454, 550
MnlI	CCTC	9 cut(s)	64, 161, 330, 420, 545, 573, 592, 687, 748
Mox20I	TGGCCA	1 cut(s)	406
Mph1103I	ATGCAT	1 cut(s)	556
MscI	TGGCCA	1 cut(s)	406
MseI	TTAA	1 cut(s)	883
MslI	CAYNNNNRTG	1 cut(s)	139
Msp20I	TGGCCA	1 cut(s)	406
MspI	CCGG	3 cut(s)	381, 648, 652
MspR9I	CCNGG	6 cut(s)	323, 381, 382, 627, 648, 836
MunI	CAATTG	1 cut(s)	678
MvaI	CCWGG	3 cut(s)	323, 627, 836
NciI	CCSGG	3 cut(s)	381, 382, 648
NdeII	GATC	1 cut(s)	799
NlaIII	CATG	2 cut(s)	103, 848
NlaIV	GGNNCC	1 cut(s)	75
NmeAIII	GCCGAG	1 cut(s)	802
NsiI	ATGCAT	1 cut(s)	556
NspI	RCATGY	1 cut(s)	103
OliI	CACNNNNGTG	1 cut(s)	139
PciI	ACATGT	1 cut(s)	99
PciSI	GCTCTTC	1 cut(s)	347
PfeI	GAWTC	1 cut(s)	61
PkrI	GCNGC	1 cut(s)	436
PpuMI	RGGWCCY	1 cut(s)	74
PscI	ACATGT	1 cut(s)	99
Psp5II	RGGWCCY	1 cut(s)	74
Psp6I	CCWGG	3 cut(s)	321, 625, 834
PspFI	CCCAGC	1 cut(s)	56
PspGI	CCWGG	3 cut(s)	321, 625, 834
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	74
PspPPI	RGGWCCY	1 cut(s)	74
RsaI	GTAC	3 cut(s)	459, 469, 618
RsaNI	GTAC	3 cut(s)	458, 468, 617
RseI	CAYNNNNRTG	1 cut(s)	139
SapI	GCTCTTC	1 cut(s)	347
SaqAI	TTAA	1 cut(s)	883
SatI	GCNGC	1 cut(s)	435
Sau3AI	GATC	1 cut(s)	799
Sau96I	GGNCC	1 cut(s)	74
ScrFI	CCNGG	6 cut(s)	323, 381, 382, 627, 648, 836
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	8 cut(s)	290, 439, 463, 579, 603, 727, 759, 879
SfaNI	GCATC	3 cut(s)	3, 165, 541
SfcI	CTRYAG	1 cut(s)	78
SinI	GGWCC	1 cut(s)	74
SmaI	CCCGGG	1 cut(s)	382
SmiMI	CAYNNNNRTG	1 cut(s)	139
SmlI	CTYRAG	2 cut(s)	536, 726
SmoI	CTYRAG	2 cut(s)	536, 726
Sse9I	AATT	7 cut(s)	197, 211, 329, 525, 630, 678, 704
SspMI	CTAG	1 cut(s)	438
StyD4I	CCNGG	6 cut(s)	321, 379, 380, 625, 646, 834
TaaI	ACNGT	4 cut(s)	138, 414, 472, 589
TaqI	TCGA	2 cut(s)	504, 879
TasI	AATT	7 cut(s)	197, 211, 329, 525, 630, 678, 704
TatI	WGTACW	1 cut(s)	616
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	883
Tru9I	TTAA	1 cut(s)	883
TscAI	CASTG	1 cut(s)	15
TseI	GCWGC	1 cut(s)	434
TspDTI	ATGAA	4 cut(s)	209, 525, 536, 579
TspMI	CCCGGG	1 cut(s)	380
TspRI	CASTG	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	74
XapI	RAATTY	4 cut(s)	211, 329, 525, 630
XceI	RCATGY	1 cut(s)	103
XcmI	CCANNNNNNNNNTGG	1 cut(s)	842
XmaI	CCCGGG	1 cut(s)	380
XspI	CTAG	1 cut(s)	438
Zsp2I	ATGCAT	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.