Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000740

Physical Location & Seq

Genomic Coordinates Reverse (-)

77487052 .. 77488205

Gene Structure 1154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG493600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCCTCCAACGCCCTTCCTCTCTTCTCCTGCCGCTTTCCGTCCATTCTCCGACGTAATTTGACTTCGTGTTTCTCGATTATTCCATCTAGGATGACTAGAAGGTTAGCCGTCTCCACACGCCACACCATGTCTGGCATGACCGGAACCGGGGAGAACCAGAGCCAGCCTTTGGAGGAAGAGCGTGTGAGCTTAAAGAATTTTTTTCAGCAAGCCAAGGATCTCGTCTCATCGGACATCGGACCACCTCACTGGTTCTCGCCTTTAGACTCCGGTCACCCCTTACATGATTCCCCCCTGCTTCTCTTTTTGCCGGGAATTGATGGCACTGGACTTGGGCTTATAATGCATCATAAGAAACTTGGAAAGATTTTTGAGGTCTTGTGCTTGCATATTCCTCCCAAGGATCGAACACCATTTACAGACCTAGTGAAGCTGGTTGAGAGAAAAATTCGGTCAGAGCATCATTTCTCACCTAATAGACCAATATATCTTGTTGGAGAATCTGTTGGAGCATGCCTTGCACTATCTGTGGCATCCCTTAACCCTGATATCGACCTTGTTCTACTTTTAGCAAATCCTGGTAACATATATTTGTTCCTTCATATTAAGCCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010287 GO:0016101 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019432 GO:0033306 GO:0034308 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576 GO:1901615 GO:1903173

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 DAGAT Hydrolase_4

Protein Analysis

206

Amino Acids

22.94

Weight (kDa)

9.0

Isoelectric Point (pI)

58.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02030 AT3G02030 AT3G26820 AT3G26820 AT3G26840 AT5G41120 AT5G41120 AT5G41120 AT5G41130 AT5G41130 AT5G41130
fragaria_vesca	FvH4_3g35400 FvH4_3g39220 FvH4_3g39220 FvH4_3g39270 FvH4_3g39280 FvH4_3g39280 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060
malus_domestica	MD09G1005800.v1.1 MD17G1009900.v1.1
prunus_persica	Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1
pyrus_communis	pycom111g00420
rosa_chinensis	RchiOBHm_Chr2g0176241 RchiOBHm_Chr5g0070671 RchiOBHm_Chr5g0070681 RchiOBHm_Chr5g0070691
rosa_laevigata	RLG00000022394 RLG00000036149 RLG00000036150 RLG00000036152
rosa_multiflora	Rmu_co8466433.1_g000001 Rmu_sc0000249.1_g000001 Rmu_sc0000405.1_g000016 Rmu_sc0005197.1_g000009 Rmu_sc0005197.1_g000015 Rmu_sc0036323.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010480 Rroxscaffold_1G00010530 Rroxscaffold_1G00010550 Rroxscaffold_1G00010560 Rroxscaffold_2G00076650 Rroxscaffold_5G00357250
rosa_rugosa	Rorug02G0592200 Rorug02G0592300 Rorug05G0407500 Rorug05G0407800
rosa_samantha	Rh2AG670700 Rh2BG682200 Rh2CG645000 Rh2DG695800 Rh5AG463200 Rh5AG463300 Rh5AG463400 Rh5BG481200 Rh5CG505400 Rh5CG505500 Rh5DG493300 Rh5DG493600 Rh5DG493700
rosa_wichuraiana	Rw2G055020 Rw5G043110 Rw5G043120 Rw5G043130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	344
AccB7I	CCANNNNNTGG	1 cut(s)	172
AciI	CCGC	1 cut(s)	34
AclWI	GGATC	2 cut(s)	228, 414
AcsI	RAATTY	2 cut(s)	199, 450
AfiI	CCNNNNNNNGG	2 cut(s)	150, 172
AjnI	CCWGG	1 cut(s)	580
AluBI	AGCT	2 cut(s)	192, 436
AluI	AGCT	2 cut(s)	192, 436
Alw26I	GTCTC	2 cut(s)	118, 232
AlwI	GGATC	2 cut(s)	228, 414
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	2 cut(s)	199, 450
AspS9I	GGNCC	1 cut(s)	242
AsuC2I	CCSGG	2 cut(s)	151, 315
AsuHPI	GGTGA	2 cut(s)	269, 465
AvaII	GGWCC	1 cut(s)	242
BarI	GAAGNNNNNNTAC	2 cut(s)	49, 81
BccI	CCATC	2 cut(s)	94, 317
BceAI	ACGGC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	582
BcnI	CCSGG	2 cut(s)	151, 315
BcoDI	GTCTC	2 cut(s)	118, 232
BfaI	CTAG	3 cut(s)	90, 99, 428
BisI	GCNGC	1 cut(s)	34
BlsI	GCNGC	1 cut(s)	35
Bme1390I	CCNGG	3 cut(s)	151, 315, 582
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	148
BmrFI	CCNGG	3 cut(s)	151, 315, 582
BmsI	GCATC	3 cut(s)	358, 472, 545
BoxI	GACNNNNGTC	1 cut(s)	273
BpuMI	CCSGG	2 cut(s)	151, 315
BsaJI	CCNNGG	3 cut(s)	150, 216, 402
BsaWI	WCCGGW	2 cut(s)	143, 272
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 172
Bse1I	ACTGG	2 cut(s)	257, 334
BseBI	CCWGG	1 cut(s)	582
BseDI	CCNNGG	3 cut(s)	150, 216, 402
BseGI	GGATG	2 cut(s)	99, 536
BseLI	CCNNNNNNNGG	2 cut(s)	150, 172
BseNI	ACTGG	2 cut(s)	257, 334
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	4 cut(s)	144, 150, 273, 314
BslI	CCNNNNNNNGG	2 cut(s)	150, 172
BsmAI	GTCTC	2 cut(s)	118, 232
BsmBI	CGTCTC	2 cut(s)	118, 232
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	220, 406
BspACI	CCGC	1 cut(s)	34
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	148
BspPI	GGATC	2 cut(s)	228, 414
BspQI	GCTCTTC	1 cut(s)	174
BsrI	ACTGG	2 cut(s)	257, 334
BssECI	CCNNGG	3 cut(s)	150, 216, 402
BssMI	GATC	2 cut(s)	220, 406
BssT1I	CCWWGG	2 cut(s)	216, 402
Bst2UI	CCWGG	1 cut(s)	582
Bst6I	CTCTTC	2 cut(s)	29, 174
BstAPI	GCANNNNNTGC	1 cut(s)	521
BstC8I	GCNNGC	4 cut(s)	167, 213, 389, 517
BstEII	GGTNACC	1 cut(s)	275
BstF5I	GGATG	2 cut(s)	99, 536
BstKTI	GATC	2 cut(s)	223, 409
BstMAI	GTCTC	2 cut(s)	118, 232
BstMBI	GATC	2 cut(s)	220, 406
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 346, 521
BstNI	CCWGG	1 cut(s)	582
BstNSI	RCATGY	1 cut(s)	519
BstPAI	GACNNNNGTC	1 cut(s)	273
BstPI	GGTNACC	1 cut(s)	275
BstSCI	CCNGG	3 cut(s)	149, 313, 580
BstX2I	RGATCY	1 cut(s)	220
BstXI	CCANNNNNNTGG	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	99, 536
BtsIMutI	CAGTG	2 cut(s)	250, 327
Cac8I	GCNNGC	4 cut(s)	167, 213, 389, 517
Cfr13I	GGNCC	1 cut(s)	242
CviAII	CATG	4 cut(s)	130, 139, 287, 516
CviJI	RGCY	9 cut(s)	5, 110, 165, 169, 192, 215, 340, 436, 613
CviKI_1	RGCY	9 cut(s)	5, 110, 165, 169, 192, 215, 340, 436, 613
DpnI	GATC	2 cut(s)	222, 408
DpnII	GATC	2 cut(s)	220, 406
Eam1104I	CTCTTC	2 cut(s)	29, 174
EarI	CTCTTC	2 cut(s)	29, 174
Eco130I	CCWWGG	2 cut(s)	216, 402
Eco32I	GATATC	1 cut(s)	553
Eco47I	GGWCC	1 cut(s)	242
Eco91I	GGTNACC	1 cut(s)	275
EcoO65I	GGTNACC	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	580
EcoRV	GATATC	1 cut(s)	553
EcoT14I	CCWWGG	2 cut(s)	216, 402
EcoT22I	ATGCAT	1 cut(s)	351
ErhI	CCWWGG	2 cut(s)	216, 402
Esp3I	CGTCTC	2 cut(s)	118, 232
FaeI	CATG	4 cut(s)	133, 142, 290, 519
FatI	CATG	4 cut(s)	129, 138, 286, 515
Fnu4HI	GCNGC	1 cut(s)	34
FokI	GGATG	2 cut(s)	106, 523
Fsp4HI	GCNGC	1 cut(s)	34
FspBI	CTAG	3 cut(s)	90, 99, 428
GluI	GCNGC	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	4 cut(s)	144, 150, 273, 314
Hin1II	CATG	4 cut(s)	133, 142, 290, 519
HinfI	GANTC	3 cut(s)	269, 290, 503
HpaII	CCGG	4 cut(s)	144, 150, 273, 314
HphI	GGTGA	2 cut(s)	269, 465
Hpy188I	TCNGA	4 cut(s)	53, 235, 242, 460
Hpy188III	TCNNGA	1 cut(s)	76
Hpy99I	CGWCG	1 cut(s)	57
HpyAV	CCTTC	3 cut(s)	26, 96, 611
HpyCH4IV	ACGT	1 cut(s)	55
HpyCH4V	TGCA	3 cut(s)	349, 391, 524
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 346, 521
HpySE526I	ACGT	1 cut(s)	55
Hsp92II	CATG	4 cut(s)	133, 142, 290, 519
Kzo9I	GATC	2 cut(s)	220, 406
LguI	GCTCTTC	1 cut(s)	174
LmnI	GCTCC	1 cut(s)	512
LweI	GCATC	3 cut(s)	358, 472, 545
MaeI	CTAG	3 cut(s)	90, 99, 428
MaeII	ACGT	1 cut(s)	55
MaeIII	GTNAC	2 cut(s)	275, 584
MalI	GATC	2 cut(s)	222, 408
MboI	GATC	2 cut(s)	220, 406
MboII	GAAGA	2 cut(s)	16, 191
MflI	RGATCY	1 cut(s)	220
MluCI	AATT	4 cut(s)	58, 199, 318, 450
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	4 cut(s)	33, 76, 478, 490
MnlI	CCTC	6 cut(s)	16, 30, 169, 258, 370, 408
Mph1103I	ATGCAT	1 cut(s)	351
MseI	TTAA	4 cut(s)	194, 543, 609, 619
MspI	CCGG	4 cut(s)	144, 150, 273, 314
MspR9I	CCNGG	3 cut(s)	151, 315, 582
MvaI	CCWGG	1 cut(s)	582
MwoI	GCNNNNNNNGC	3 cut(s)	11, 346, 521
NciI	CCSGG	2 cut(s)	151, 315
NdeII	GATC	2 cut(s)	220, 406
NlaIII	CATG	4 cut(s)	133, 142, 290, 519
NlaIV	GGNNCC	1 cut(s)	148
NmuCI	GTSAC	1 cut(s)	275
NsiI	ATGCAT	1 cut(s)	351
NspI	RCATGY	1 cut(s)	519
PaeI	GCATGC	1 cut(s)	519
PciSI	GCTCTTC	1 cut(s)	174
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PfeI	GAWTC	2 cut(s)	290, 503
PflMI	CCANNNNNTGG	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	35
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
PshAI	GACNNNNGTC	1 cut(s)	273
PsiI	TTATAA	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	580
PspEI	GGTNACC	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	580
PspN4I	GGNNCC	1 cut(s)	148
PspPI	GGNCC	1 cut(s)	242
PsrI	GAACNNNNNNTAC	2 cut(s)	403, 435
PsuI	RGATCY	1 cut(s)	220
SapI	GCTCTTC	1 cut(s)	174
SaqAI	TTAA	4 cut(s)	194, 543, 609, 619
SatI	GCNGC	1 cut(s)	34
Sau3AI	GATC	2 cut(s)	220, 406
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	3 cut(s)	151, 315, 582
SetI	ASST	9 cut(s)	58, 107, 194, 250, 381, 429, 438, 478, 561
SfaNI	GCATC	3 cut(s)	358, 472, 545
SinI	GGWCC	1 cut(s)	242
SphI	GCATGC	1 cut(s)	519
Sse9I	AATT	4 cut(s)	58, 199, 318, 450
SsiI	CCGC	1 cut(s)	34
SspMI	CTAG	3 cut(s)	90, 99, 428
StyD4I	CCNGG	3 cut(s)	149, 313, 580
StyI	CCWWGG	2 cut(s)	216, 402
TaiI	ACGT	1 cut(s)	58
TaqI	TCGA	3 cut(s)	77, 409, 555
TaqII	GACCGA	1 cut(s)	444
TasI	AATT	4 cut(s)	58, 199, 318, 450
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	2 cut(s)	290, 503
Tru1I	TTAA	4 cut(s)	194, 543, 609, 619
Tru9I	TTAA	4 cut(s)	194, 543, 609, 619
TscAI	CASTG	2 cut(s)	257, 334
TseFI	GTSAC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	1 cut(s)	593
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	2 cut(s)	257, 334
Van91I	CCANNNNNTGG	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	2 cut(s)	199, 450
XceI	RCATGY	1 cut(s)	519
XcmI	CCANNNNNNNNNTGG	1 cut(s)	131
XspI	CTAG	3 cut(s)	90, 99, 428
Zsp2I	ATGCAT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.