Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000740

Physical Location & Seq

Genomic Coordinates Reverse (-)

79244380 .. 79248526

Gene Structure 4147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG463200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2007 bp

ATGGCCTCCAACGCCCTTCCTCTCTTCCCCTGCCGCTTTCCGACCATTCTCCGACGTAATTTGACTTCGTGTTTCTCCATTATTCCATCTAGGATGACTAGAAGGTTAGCCGTCTCCACACGCCACACCATGTCTGACATGACCGGAACCGGAGAGAACCAGAGCCAGCCTTTGGAGGAAGAGCGTGTGAGCTTAAAGCATTTTTTTCAGCAGGCCAAGGATCTCGTCTCATCGGACATCGGACCACCTCACTGGTTCTCGCCTTTAGACTGTGGTCACCCCTTACATGATTCCCCCCTGCTTCTCTTTTTGCCGGGAATTGATGGCACTGGACTTGGGCTTATAATGCATCATAAGAAACTTGGAAAGATTTTTGAGGTCTTGTGCTTGCATATTCCTCCCAAGGATCAAACACCAATTACAGACCTAGTGAAGCTGGTTGAGAGAAAAATTCGGTCAGAGCATCATTTCTCACCTAATAGACCAATATATCTTGTTGGAGAATCTGTTGGAGCATGCCTTGCACTATCTGTGGCATCCCTTAACCCTGATATCGACCTTGTTCTACTTTTAGCAAATCCTGCAACGTCCTTCGGCAGGTCACCACTTCAACCCATATTACCTTTACTGCAGTTCATGTCTGAGTTATTACCCAATCTTAGTCTTCCTCATGTACTGAGTTCAATGGCAGGTGCGATGATGGCTGATTTAGAGAAGGGCGTTGAAAGGCTAACGCGGGATCTTGTTGCACCATCAATAACTTACCTCTCTGTTCTTGCTGATATCTTACCCATAGAAACACTTCTGTGGAAGCTACAAATAATTAATTCAGCTTCTTCGTATGCCAATTCACGCCTCCATGCTGTAAAAGCTCAAACCCTGATACTTTCCAGTGGAAGAGATCCATTGCTACCTAATCAAGAAGAAGGTTTGAGACTCCAACGGCTGCTTGCAAATTGTGAGATCCGTACATTTGAAGAATCTGGCCATTTCCTCTTCTTGGAAGATGCTTTTGATTTGGTAACTGTTATCAAGCAGGTTGGTGTCTATCGCCGTTTAAAAGAACGAGATTTTGTTCTAGATTACATACCACCATCACCTTCTGAATTAAAAGATGTACCGGACAAATACAGATGGATTAGCATAATTATGAGCCCAGTGATGCTCTCAACTTTAGCAGATGGGAAGATAGTGAGGGGCTTTGCTGGGATTCCTTCAGAGGGTCCTGTAGTGTATGTCGGTTATCACATGTTACTGGGATTTGATATCTTACCATTGGTAGCACAGTTGTGGGAACAAAAAGGCATCCATCTGCGAGGGATAGCACATCCAATGATGTTTATGAAATTGAAACAAGGAAATTTAGTTGAGTTACCCTTTTCCGACTATTTCAGACTGATGGGTGCTGTTCCTGTCTCAGGAAAAAACTTTTTCAAGCTACTCTCTACAAAGTCTCATATCCTACTCTATCCTGGTGGAGTGCGTGAGGCTCTTCACAGGAAGGGGGAAGCATATAAGCTATTTTGGCCTGAACAGTCAGAGTTTGTGAGGATGGCAGCTAGATTTGGAGCCAAAATTATACCCTTTGGTGCTGTTGGAGAAGATGACTGGGGTGACGTATTATTCGATTATGAAGATCAGATGAAAGTTCCTTTCCTCAAGAAATATATAGAAGAAAAATCAGATGAAGCTGGAAAACTGAGGACTACCATTGATGGGGAAGTAGGAAACCAAGCTGTACACTACCCAGGAATTCTACCGAAATTTCCTGGCCGGTTTTATTATTGTTTTGGGAAACCAATTGAAACAGAAGGGAGGAACCAGGAATTACGAGACAAGGAGAAGGCTCAGGAATTGTATTTACAAGTGAAATCAGAGGTTGAGAACTGCATTGCTTATTTGCAGAAAAAAAGAGAGAGTGATCCTTACAGAAGTCTTGCATCTCGGCTACTCTTCCAGGCAAGACATGGCTTTACAGCTCAAGTTCCTGCATTTGACATCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010287 GO:0016101 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019432 GO:0033306 GO:0034308 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576 GO:1901615 GO:1903173

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 DAGAT Hydrolase_4

Protein Analysis

668

Amino Acids

75.23

Weight (kDa)

7.32

Isoelectric Point (pI)

50.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	140 - 335	1.9e-09	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	140 - 340	1.6e-07	Alpha/beta hydrolase family
Abhydrolase_1	PF00561	159 - 336	2.4e-06	alpha/beta hydrolase fold
DAGAT	PF03982	461 - 536	2.8e-07	Diacylglycerol acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02030 AT3G02030 AT3G26820 AT3G26820 AT3G26840 AT5G41120 AT5G41120 AT5G41120 AT5G41130 AT5G41130 AT5G41130
fragaria_vesca	FvH4_3g35400 FvH4_3g39220 FvH4_3g39220 FvH4_3g39270 FvH4_3g39280 FvH4_3g39280 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060
malus_domestica	MD09G1005800.v1.1 MD17G1009900.v1.1
prunus_persica	Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1
pyrus_communis	pycom111g00420
rosa_chinensis	RchiOBHm_Chr2g0176241 RchiOBHm_Chr5g0070671 RchiOBHm_Chr5g0070681 RchiOBHm_Chr5g0070691
rosa_laevigata	RLG00000022394 RLG00000036149 RLG00000036150 RLG00000036152
rosa_multiflora	Rmu_co8466433.1_g000001 Rmu_sc0000249.1_g000001 Rmu_sc0000405.1_g000016 Rmu_sc0005197.1_g000009 Rmu_sc0005197.1_g000015 Rmu_sc0036323.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010480 Rroxscaffold_1G00010530 Rroxscaffold_1G00010550 Rroxscaffold_1G00010560 Rroxscaffold_2G00076650 Rroxscaffold_5G00357250
rosa_rugosa	Rorug02G0592200 Rorug02G0592300 Rorug05G0407500 Rorug05G0407800
rosa_samantha	Rh2AG670700 Rh2BG682200 Rh2CG645000 Rh2DG695800 Rh5AG463200 Rh5AG463300 Rh5AG463400 Rh5BG481200 Rh5CG505400 Rh5CG505500 Rh5DG493300 Rh5DG493600 Rh5DG493700
rosa_wichuraiana	Rw2G055020 Rw5G043110 Rw5G043120 Rw5G043130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	344
AarI	CACCTGC	1 cut(s)	680
Acc36I	ACCTGC	3 cut(s)	588, 680, 1027
AccB7I	CCANNNNNTGG	1 cut(s)	172
AccII	CGCG	1 cut(s)	736
AciI	CCGC	2 cut(s)	34, 736
AclWI	GGATC	6 cut(s)	228, 414, 747, 896, 958, 1916
AcoI	YGGCCR	2 cut(s)	985, 1771
AcsI	RAATTY	4 cut(s)	450, 1360, 1752, 1763
AcuI	CTGAAG	1 cut(s)	1200
AfaI	GTAC	4 cut(s)	675, 970, 1119, 1740
AfiI	CCNNNNNNNGG	6 cut(s)	172, 597, 1000, 1220, 1418, 1716
AflIII	ACRYGT	1 cut(s)	1248
AgsI	TTSAA	7 cut(s)	611, 684, 725, 977, 1351, 1435, 1805
AjnI	CCWGG	5 cut(s)	1471, 1747, 1768, 1821, 1956
AleI	CACNNNNGTG	2 cut(s)	805, 1288
Alw26I	GTCTC	6 cut(s)	118, 232, 928, 1420, 1458, 1827
AlwI	GGATC	6 cut(s)	228, 414, 747, 896, 958, 1916
AoxI	GGCC	5 cut(s)	3, 213, 985, 1526, 1771
ApeKI	GCWGC	2 cut(s)	946, 1556
ApoI	RAATTY	4 cut(s)	450, 1360, 1752, 1763
ArsI	GACNNNNNNTTYG	2 cut(s)	1607, 1639
AseI	ATTAAT	1 cut(s)	825
Asp700I	GAANNNNTTC	1 cut(s)	801
AspS9I	GGNCC	2 cut(s)	242, 1223
AsuC2I	CCSGG	1 cut(s)	315
AsuHPI	GGTGA	5 cut(s)	269, 465, 594, 1089, 1625
AvaII	GGWCC	2 cut(s)	242, 1223
BalI	TGGCCA	1 cut(s)	987
BanII	GRGCYC	1 cut(s)	1157
BarI	GAAGNNNNNNTAC	2 cut(s)	49, 81
BbsI	GAAGAC	1 cut(s)	656
BbvI	GCAGC	2 cut(s)	933, 1568
BceAI	ACGGC	3 cut(s)	95, 959, 1038
BciT130I	CCWGG	5 cut(s)	1473, 1749, 1770, 1823, 1958
BcnI	CCSGG	1 cut(s)	315
BcoDI	GTCTC	6 cut(s)	118, 232, 928, 1420, 1458, 1827
BfaI	CTAG	5 cut(s)	90, 99, 428, 1079, 1560
BfmI	CTRYAG	2 cut(s)	629, 1227
BfuAI	ACCTGC	3 cut(s)	588, 680, 1027
BisI	GCNGC	3 cut(s)	34, 947, 1557
BlsI	GCNGC	3 cut(s)	35, 948, 1558
Bme1390I	CCNGG	6 cut(s)	315, 1473, 1749, 1770, 1823, 1958
Bme18I	GGWCC	2 cut(s)	242, 1223
BmgT120I	GGNCC	2 cut(s)	242, 1223
BmiI	GGNNCC	4 cut(s)	148, 1224, 1570, 1820
BmrFI	CCNGG	6 cut(s)	315, 1473, 1749, 1770, 1823, 1958
BmrI	ACTGGG	3 cut(s)	1151, 1265, 1618
BmsI	GCATC	7 cut(s)	358, 472, 545, 997, 1152, 1314, 1949
BmuI	ACTGGG	3 cut(s)	1151, 1265, 1618
BoxI	GACNNNNGTC	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	656
Bpu10I	CCTNAGC	1 cut(s)	1848
BpuEI	CTTGAG	2 cut(s)	1643, 1965
BpuMI	CCSGG	1 cut(s)	315
Bsa29I	ATCGAT	1 cut(s)	2001
BsaJI	CCNNGG	3 cut(s)	216, 402, 1747
BsaWI	WCCGGW	3 cut(s)	143, 149, 1120
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bsc4I	CCNNNNNNNGG	6 cut(s)	172, 597, 1000, 1220, 1418, 1716
Bse118I	RCCGGY	1 cut(s)	1773
Bse1I	ACTGG	6 cut(s)	257, 334, 891, 1157, 1260, 1613
Bse3DI	GCAATG	2 cut(s)	905, 1890
BseBI	CCWGG	5 cut(s)	1473, 1749, 1770, 1823, 1958
BseCI	ATCGAT	1 cut(s)	2001
BseDI	CCNNGG	3 cut(s)	216, 402, 1747
BseGI	GGATG	5 cut(s)	99, 536, 1305, 1327, 1557
BseLI	CCNNNNNNNGG	6 cut(s)	172, 597, 1000, 1220, 1418, 1716
BseMI	GCAATG	2 cut(s)	905, 1890
BseMII	CTCAG	5 cut(s)	633, 668, 1431, 1691, 1862
BseNI	ACTGG	6 cut(s)	257, 334, 891, 1157, 1260, 1613
BseXI	GCAGC	2 cut(s)	933, 1568
BseYI	CCCAGC	1 cut(s)	1205
Bsh1236I	CGCG	1 cut(s)	736
BshFI	GGCC	5 cut(s)	5, 215, 987, 1528, 1773
BshVI	ATCGAT	1 cut(s)	2001
BsiSI	CCGG	5 cut(s)	144, 150, 314, 1121, 1774
BslI	CCNNNNNNNGG	6 cut(s)	172, 597, 1000, 1220, 1418, 1716
BsmAI	GTCTC	6 cut(s)	118, 232, 928, 1420, 1458, 1827
BsmBI	CGTCTC	2 cut(s)	118, 232
BsnI	GGCC	5 cut(s)	5, 215, 987, 1528, 1773
Bsp1286I	GDGCHC	1 cut(s)	1157
Bsp1407I	TGTACA	1 cut(s)	1738
Bsp143I	GATC	7 cut(s)	220, 406, 739, 901, 963, 1636, 1921
BspACI	CCGC	2 cut(s)	34, 736
BspANI	GGCC	5 cut(s)	5, 215, 987, 1528, 1773
BspCNI	CTCAG	5 cut(s)	634, 669, 1430, 1692, 1861
BspDI	ATCGAT	1 cut(s)	2001
BspFNI	CGCG	1 cut(s)	736
BspLI	GGNNCC	4 cut(s)	148, 1224, 1570, 1820
BspMAI	CTGCAG	1 cut(s)	633
BspMI	ACCTGC	3 cut(s)	588, 680, 1027
BspPI	GGATC	6 cut(s)	228, 414, 747, 896, 958, 1916
BspQI	GCTCTTC	2 cut(s)	174, 1497
BsrDI	GCAATG	2 cut(s)	905, 1890
BsrFI	RCCGGY	1 cut(s)	1773
BsrGI	TGTACA	1 cut(s)	1738
BsrI	ACTGG	6 cut(s)	257, 334, 891, 1157, 1260, 1613
BssAI	RCCGGY	1 cut(s)	1773
BssECI	CCNNGG	3 cut(s)	216, 402, 1747
BssMI	GATC	7 cut(s)	220, 406, 739, 901, 963, 1636, 1921
BssT1I	CCWWGG	2 cut(s)	216, 402
Bst2UI	CCWGG	5 cut(s)	1473, 1749, 1770, 1823, 1958
Bst4CI	ACNGT	4 cut(s)	272, 1027, 1287, 1536
Bst6I	CTCTTC	6 cut(s)	29, 174, 892, 1001, 1497, 1958
BstAPI	GCANNNNNTGC	2 cut(s)	521, 581
BstAUI	TGTACA	1 cut(s)	1738
BstC8I	GCNNGC	5 cut(s)	167, 213, 389, 517, 951
BstDEI	CTNAG	6 cut(s)	642, 659, 677, 1417, 1700, 1848
BstEII	GGTNACC	2 cut(s)	275, 600
BstENI	CCTNNNNNAGG	2 cut(s)	595, 1416
BstF5I	GGATG	5 cut(s)	99, 536, 1305, 1327, 1557
BstFNI	CGCG	1 cut(s)	736
BstKTI	GATC	7 cut(s)	223, 409, 742, 904, 966, 1639, 1924
BstMAI	GTCTC	6 cut(s)	118, 232, 928, 1420, 1458, 1827
BstMBI	GATC	7 cut(s)	220, 406, 739, 901, 963, 1636, 1921
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 346, 521, 581, 701, 869, 1525
BstNI	CCWGG	5 cut(s)	1473, 1749, 1770, 1823, 1958
BstNSI	RCATGY	2 cut(s)	519, 1252
BstPAI	GACNNNNGTC	1 cut(s)	273
BstPI	GGTNACC	2 cut(s)	275, 600
BstSCI	CCNGG	6 cut(s)	313, 1471, 1747, 1768, 1821, 1956
BstSFI	CTRYAG	2 cut(s)	629, 1227
BstUI	CGCG	1 cut(s)	736
BstV1I	GCAGC	2 cut(s)	933, 1568
BstV2I	GAAGAC	1 cut(s)	656
BstX2I	RGATCY	4 cut(s)	220, 739, 901, 963
BstXI	CCANNNNNNTGG	1 cut(s)	252
BstYI	RGATCY	4 cut(s)	220, 739, 901, 963
Bsu15I	ATCGAT	1 cut(s)	2001
BsuRI	GGCC	5 cut(s)	5, 215, 987, 1528, 1773
BsuTUI	ATCGAT	1 cut(s)	2001
BtgZI	GCGATG	1 cut(s)	710
BtsCI	GGATG	5 cut(s)	99, 536, 1305, 1327, 1557
BtsIMutI	CAGTG	4 cut(s)	250, 327, 898, 1164
BveI	ACCTGC	3 cut(s)	588, 680, 1027
Cac8I	GCNNGC	5 cut(s)	167, 213, 389, 517, 951
Cfr10I	RCCGGY	1 cut(s)	1773
Cfr13I	GGNCC	2 cut(s)	242, 1223
ClaI	ATCGAT	1 cut(s)	2001
Csp6I	GTAC	4 cut(s)	674, 969, 1118, 1739
CviAII	CATG	9 cut(s)	130, 139, 287, 516, 637, 671, 860, 1249, 1967
CviQI	GTAC	4 cut(s)	674, 969, 1118, 1739
DdeI	CTNAG	6 cut(s)	642, 659, 677, 1417, 1700, 1848
DpnI	GATC	7 cut(s)	222, 408, 741, 903, 965, 1638, 1923
DpnII	GATC	7 cut(s)	220, 406, 739, 901, 963, 1636, 1921
DraI	TTTAAA	1 cut(s)	1059
EaeI	YGGCCR	2 cut(s)	985, 1771
Eam1104I	CTCTTC	6 cut(s)	29, 174, 892, 1001, 1497, 1958
EarI	CTCTTC	6 cut(s)	29, 174, 892, 1001, 1497, 1958
Eco130I	CCWWGG	2 cut(s)	216, 402
Eco24I	GRGCYC	1 cut(s)	1157
Eco32I	GATATC	3 cut(s)	553, 784, 1267
Eco47I	GGWCC	2 cut(s)	242, 1223
Eco57I	CTGAAG	1 cut(s)	1200
Eco91I	GGTNACC	2 cut(s)	275, 600
EcoNI	CCTNNNNNAGG	2 cut(s)	595, 1416
EcoO109I	RGGNCCY	1 cut(s)	1223
EcoO65I	GGTNACC	2 cut(s)	275, 600
EcoRI	GAATTC	1 cut(s)	1752
EcoRII	CCWGG	5 cut(s)	1471, 1747, 1768, 1821, 1956
EcoRV	GATATC	3 cut(s)	553, 784, 1267
EcoT14I	CCWWGG	2 cut(s)	216, 402
EcoT22I	ATGCAT	1 cut(s)	351
EcoT38I	GRGCYC	1 cut(s)	1157
ErhI	CCWWGG	2 cut(s)	216, 402
Esp3I	CGTCTC	2 cut(s)	118, 232
FaeI	CATG	9 cut(s)	133, 142, 290, 519, 640, 674, 863, 1252, 1970
FatI	CATG	9 cut(s)	129, 138, 286, 515, 636, 670, 859, 1248, 1966
FauI	CCCGC	1 cut(s)	729
Fnu4HI	GCNGC	3 cut(s)	34, 947, 1557
FokI	GGATG	5 cut(s)	106, 523, 1292, 1314, 1564
FriOI	GRGCYC	1 cut(s)	1157
Fsp4HI	GCNGC	3 cut(s)	34, 947, 1557
FspBI	CTAG	5 cut(s)	90, 99, 428, 1079, 1560
GluI	GCNGC	3 cut(s)	34, 947, 1557
GsaI	CCCAGC	1 cut(s)	1209
HaeIII	GGCC	5 cut(s)	5, 215, 987, 1528, 1773
HapII	CCGG	5 cut(s)	144, 150, 314, 1121, 1774
Hin1II	CATG	9 cut(s)	133, 142, 290, 519, 640, 674, 863, 1252, 1970
HinfI	GANTC	5 cut(s)	290, 503, 936, 980, 1210
HpaII	CCGG	5 cut(s)	144, 150, 314, 1121, 1774
HphI	GGTGA	5 cut(s)	269, 465, 594, 1089, 1625
Hpy166II	GTNNAC	1 cut(s)	1741
Hpy188III	TCNNGA	5 cut(s)	920, 1079, 1419, 1660, 1850
Hpy8I	GTNNAC	1 cut(s)	1741
Hpy99I	CGWCG	1 cut(s)	57
HpyCH4III	ACNGT	4 cut(s)	272, 1027, 1287, 1536
HpyCH4IV	ACGT	3 cut(s)	55, 587, 1617
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 346, 521, 581, 701, 869, 1525
HpyF3I	CTNAG	6 cut(s)	642, 659, 677, 1417, 1700, 1848
HpySE526I	ACGT	3 cut(s)	55, 587, 1617
Hsp92II	CATG	9 cut(s)	133, 142, 290, 519, 640, 674, 863, 1252, 1970
Kzo9I	GATC	7 cut(s)	220, 406, 739, 901, 963, 1636, 1921
LguI	GCTCTTC	2 cut(s)	174, 1497
LmnI	GCTCC	2 cut(s)	512, 1568
Lsp1109I	GCAGC	2 cut(s)	933, 1568
LweI	GCATC	7 cut(s)	358, 472, 545, 997, 1152, 1314, 1949
MaeI	CTAG	5 cut(s)	90, 99, 428, 1079, 1560
MaeII	ACGT	3 cut(s)	55, 587, 1617
MaeIII	GTNAC	6 cut(s)	275, 600, 1021, 1251, 1371, 1613
MalI	GATC	7 cut(s)	222, 408, 741, 903, 965, 1638, 1923
MboI	GATC	7 cut(s)	220, 406, 739, 901, 963, 1636, 1921
MfeI	CAATTG	1 cut(s)	1800
MflI	RGATCY	4 cut(s)	220, 739, 901, 963
MhlI	GDGCHC	1 cut(s)	1157
MlsI	TGGCCA	1 cut(s)	987
MluNI	TGGCCA	1 cut(s)	987
MlyI	GAGTC	1 cut(s)	930
MmeI	TCCRAC	8 cut(s)	33, 65, 76, 478, 490, 964, 1407, 1576
Mox20I	TGGCCA	1 cut(s)	987
Mph1103I	ATGCAT	1 cut(s)	351
MroXI	GAANNNNTTC	1 cut(s)	801
MscI	TGGCCA	1 cut(s)	987
MseI	TTAA	6 cut(s)	194, 543, 825, 1058, 1109, 2005
MslI	CAYNNNNRTG	3 cut(s)	805, 1148, 1288
Msp20I	TGGCCA	1 cut(s)	987
MspI	CCGG	5 cut(s)	144, 150, 314, 1121, 1774
MspR9I	CCNGG	6 cut(s)	315, 1473, 1749, 1770, 1823, 1958
MunI	CAATTG	1 cut(s)	1800
MvaI	CCWGG	5 cut(s)	1473, 1749, 1770, 1823, 1958
MvnI	CGCG	1 cut(s)	736
MwoI	GCNNNNNNNGC	7 cut(s)	11, 346, 521, 581, 701, 869, 1525
NciI	CCSGG	1 cut(s)	315
NdeII	GATC	7 cut(s)	220, 406, 739, 901, 963, 1636, 1921
NlaIII	CATG	9 cut(s)	133, 142, 290, 519, 640, 674, 863, 1252, 1970
NlaIV	GGNNCC	4 cut(s)	148, 1224, 1570, 1820
NmeAIII	GCCGAG	1 cut(s)	1924
NmuCI	GTSAC	3 cut(s)	275, 600, 1613
NsiI	ATGCAT	1 cut(s)	351
NspI	RCATGY	2 cut(s)	519, 1252
OliI	CACNNNNGTG	2 cut(s)	805, 1288
PaeI	GCATGC	1 cut(s)	519
PaqCI	CACCTGC	1 cut(s)	680
PciI	ACATGT	1 cut(s)	1248
PciSI	GCTCTTC	2 cut(s)	174, 1497
PcsI	WCGNNNNNNNCGW	1 cut(s)	1623
PdmI	GAANNNNTTC	1 cut(s)	801
PfeI	GAWTC	4 cut(s)	290, 503, 980, 1210
PflMI	CCANNNNNTGG	1 cut(s)	172
PkrI	GCNGC	3 cut(s)	35, 948, 1558
PleI	GAGTC	1 cut(s)	930
PpsI	GAGTC	1 cut(s)	930
PpuMI	RGGWCCY	1 cut(s)	1223
PscI	ACATGT	1 cut(s)	1248
PshAI	GACNNNNGTC	1 cut(s)	273
PshBI	ATTAAT	1 cut(s)	825
PsiI	TTATAA	1 cut(s)	344
Psp5II	RGGWCCY	1 cut(s)	1223
Psp6I	CCWGG	5 cut(s)	1471, 1747, 1768, 1821, 1956
PspEI	GGTNACC	2 cut(s)	275, 600
PspFI	CCCAGC	1 cut(s)	1205
PspGI	CCWGG	5 cut(s)	1471, 1747, 1768, 1821, 1956
PspN4I	GGNNCC	4 cut(s)	148, 1224, 1570, 1820
PspPI	GGNCC	2 cut(s)	242, 1223
PspPPI	RGGWCCY	1 cut(s)	1223
PstI	CTGCAG	1 cut(s)	633
PsuI	RGATCY	4 cut(s)	220, 739, 901, 963
RsaI	GTAC	4 cut(s)	675, 970, 1119, 1740
RsaNI	GTAC	4 cut(s)	674, 969, 1118, 1739
RseI	CAYNNNNRTG	3 cut(s)	805, 1148, 1288
SapI	GCTCTTC	2 cut(s)	174, 1497
SaqAI	TTAA	6 cut(s)	194, 543, 825, 1058, 1109, 2005
SatI	GCNGC	3 cut(s)	34, 947, 1557
Sau3AI	GATC	7 cut(s)	220, 406, 739, 901, 963, 1636, 1921
Sau96I	GGNCC	2 cut(s)	242, 1223
SchI	GAGTC	1 cut(s)	930
ScrFI	CCNGG	6 cut(s)	315, 1473, 1749, 1770, 1823, 1958
SduI	GDGCHC	1 cut(s)	1157
SfaNI	GCATC	7 cut(s)	358, 472, 545, 997, 1152, 1314, 1949
SfcI	CTRYAG	2 cut(s)	629, 1227
SinI	GGWCC	2 cut(s)	242, 1223
SmiMI	CAYNNNNRTG	3 cut(s)	805, 1148, 1288
SmlI	CTYRAG	2 cut(s)	1658, 1980
SmoI	CTYRAG	2 cut(s)	1658, 1980
SphI	GCATGC	1 cut(s)	519
SsiI	CCGC	2 cut(s)	34, 736
SspMI	CTAG	5 cut(s)	90, 99, 428, 1079, 1560
StyD4I	CCNGG	6 cut(s)	313, 1471, 1747, 1768, 1821, 1956
StyI	CCWWGG	2 cut(s)	216, 402
TaaI	ACNGT	4 cut(s)	272, 1027, 1287, 1536
TaiI	ACGT	3 cut(s)	58, 590, 1620
TaqI	TCGA	3 cut(s)	555, 1626, 2001
TaqII	GACCGA	1 cut(s)	444
TatI	WGTACW	2 cut(s)	673, 1738
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	4 cut(s)	290, 503, 980, 1210
Tru1I	TTAA	6 cut(s)	194, 543, 825, 1058, 1109, 2005
Tru9I	TTAA	6 cut(s)	194, 543, 825, 1058, 1109, 2005
TscAI	CASTG	4 cut(s)	257, 334, 898, 1164
TseFI	GTSAC	3 cut(s)	275, 600, 1613
TseI	GCWGC	2 cut(s)	946, 1556
Tsp45I	GTSAC	3 cut(s)	275, 600, 1613
TspDTI	ATGAA	5 cut(s)	625, 1358, 1647, 1658, 1701
TspGWI	ACGGA	1 cut(s)	956
TspRI	CASTG	4 cut(s)	257, 334, 898, 1164
Van91I	CCANNNNNTGG	1 cut(s)	172
VpaK11BI	GGWCC	2 cut(s)	242, 1223
VspI	ATTAAT	1 cut(s)	825
XagI	CCTNNNNNAGG	2 cut(s)	595, 1416
XapI	RAATTY	4 cut(s)	450, 1360, 1752, 1763
XbaI	TCTAGA	1 cut(s)	1078
XceI	RCATGY	2 cut(s)	519, 1252
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1964
XmnI	GAANNNNTTC	1 cut(s)	801
XspI	CTAG	5 cut(s)	90, 99, 428, 1079, 1560
Zsp2I	ATGCAT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.