Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000740

Physical Location & Seq

Genomic Coordinates Forward (+)

13311266 .. 13320628

Gene Structure 9363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00010550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCCTCCAACGCCCTTCCTCTCTTCCCCTGCAGCTTTCAGTCCATTCTCCGACGTAATTTGACTTCGTGTTTCTCCATTATTCCATCTAGGATGACTAGAAGGTTAGCCGTCTCCACACGCCACACCATGTCTGGCGTGACCGGAACCGGGGAGAACCAGAGCCAGCCTTTGGAGGAAGACCGTGTGAGCTTAAAGCATTTTTTTCAGCAAGCCAAGTATCTCGTCTCATCGGACATCGGACCACCTCACTGGTTCTCGCCTTTAGACTGCGGTCACCCCTTACATGATTCCCCCCTGCTTCTCTTTTTGCCGGACCTAGTGAAGCTGGTTGAGAGAAAAATTCGGTCAGAGCATCATTTCTCACCTAATAGACCAATATATCTTGTTGGAGAATCTGTTGGAGCATGCCTTGCACTATCTGTGGCATCCCTTAACCCTGATATCGACCTTGTTCTACTTTTAGCAAATCCTGATTCTCTTCTAAACAGCTTTCACATCGATTGGTGTATAGATCTCAAAATAACTCCGATAAGGCTGAAATTCGGAGGTCAAATGGAAGAGACAGAGATGAACAACTTTGATGAAGAAAGGATTTTAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010287 GO:0016101 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019432 GO:0033306 GO:0034308 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576 GO:1901615 GO:1903173

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 DAGAT Hydrolase_4

Protein Analysis

201

Amino Acids

22.65

Weight (kDa)

6.04

Isoelectric Point (pI)

53.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02030 AT3G02030 AT3G26820 AT3G26820 AT3G26840 AT5G41120 AT5G41120 AT5G41120 AT5G41130 AT5G41130 AT5G41130
fragaria_vesca	FvH4_3g35400 FvH4_3g39220 FvH4_3g39220 FvH4_3g39270 FvH4_3g39280 FvH4_3g39280 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060
malus_domestica	MD09G1005800.v1.1 MD17G1009900.v1.1
prunus_persica	Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1
pyrus_communis	pycom111g00420
rosa_chinensis	RchiOBHm_Chr2g0176241 RchiOBHm_Chr5g0070671 RchiOBHm_Chr5g0070681 RchiOBHm_Chr5g0070691
rosa_laevigata	RLG00000022394 RLG00000036149 RLG00000036150 RLG00000036152
rosa_multiflora	Rmu_co8466433.1_g000001 Rmu_sc0000249.1_g000001 Rmu_sc0000405.1_g000016 Rmu_sc0005197.1_g000009 Rmu_sc0005197.1_g000015 Rmu_sc0036323.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010480 Rroxscaffold_1G00010530 Rroxscaffold_1G00010550 Rroxscaffold_1G00010560 Rroxscaffold_2G00076650 Rroxscaffold_5G00357250
rosa_rugosa	Rorug02G0592200 Rorug02G0592300 Rorug05G0407500 Rorug05G0407800
rosa_samantha	Rh2AG670700 Rh2BG682200 Rh2CG645000 Rh2DG695800 Rh5AG463200 Rh5AG463300 Rh5AG463400 Rh5BG481200 Rh5CG505400 Rh5CG505500 Rh5DG493300 Rh5DG493600 Rh5DG493700
rosa_wichuraiana	Rw2G055020 Rw5G043110 Rw5G043120 Rw5G043130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	172
AciI	CCGC	1 cut(s)	273
AcsI	RAATTY	2 cut(s)	342, 542
AfiI	CCNNNNNNNGG	2 cut(s)	150, 172
AluBI	AGCT	4 cut(s)	36, 192, 328, 492
AluI	AGCT	4 cut(s)	36, 192, 328, 492
Alw26I	GTCTC	3 cut(s)	118, 232, 557
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	33
ApoI	RAATTY	2 cut(s)	342, 542
AspS9I	GGNCC	2 cut(s)	242, 316
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	2 cut(s)	269, 357
AvaII	GGWCC	2 cut(s)	242, 316
BarI	GAAGNNNNNNTAC	2 cut(s)	49, 81
BbsI	GAAGAC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	45
BccI	CCATC	1 cut(s)	94
BceAI	ACGGC	1 cut(s)	95
BcnI	CCSGG	1 cut(s)	151
BcoDI	GTCTC	3 cut(s)	118, 232, 557
BfaI	CTAG	3 cut(s)	90, 99, 320
BfmI	CTRYAG	1 cut(s)	31
BglII	AGATCT	1 cut(s)	514
BisI	GCNGC	1 cut(s)	34
BlsI	GCNGC	1 cut(s)	35
Bme1390I	CCNGG	1 cut(s)	151
Bme18I	GGWCC	2 cut(s)	242, 316
BmgT120I	GGNCC	2 cut(s)	242, 316
BmiI	GGNNCC	1 cut(s)	148
BmrFI	CCNGG	1 cut(s)	151
BmsI	GCATC	2 cut(s)	364, 437
BoxI	GACNNNNGTC	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	186
BpuMI	CCSGG	1 cut(s)	151
Bsa29I	ATCGAT	1 cut(s)	501
BsaBI	GATNNNNATC	1 cut(s)	599
BsaJI	CCNNGG	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	143
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 172
Bse1I	ACTGG	1 cut(s)	257
Bse8I	GATNNNNATC	1 cut(s)	599
BseCI	ATCGAT	1 cut(s)	501
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	2 cut(s)	99, 428
BseJI	GATNNNNATC	1 cut(s)	599
BseLI	CCNNNNNNNGG	2 cut(s)	150, 172
BseNI	ACTGG	1 cut(s)	257
BseXI	GCAGC	1 cut(s)	45
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	501
BsiSI	CCGG	3 cut(s)	144, 150, 314
BslI	CCNNNNNNNGG	2 cut(s)	150, 172
BsmAI	GTCTC	3 cut(s)	118, 232, 557
BsmBI	CGTCTC	2 cut(s)	118, 232
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	514
BspACI	CCGC	1 cut(s)	273
BspANI	GGCC	1 cut(s)	5
BspDI	ATCGAT	1 cut(s)	501
BspLI	GGNNCC	1 cut(s)	148
BspMAI	CTGCAG	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	257
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	1 cut(s)	514
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	3 cut(s)	29, 486, 555
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstC8I	GCNNGC	3 cut(s)	167, 213, 409
BstEII	GGTNACC	1 cut(s)	275
BstF5I	GGATG	2 cut(s)	99, 428
BstKTI	GATC	1 cut(s)	517
BstMAI	GTCTC	3 cut(s)	118, 232, 557
BstMBI	GATC	1 cut(s)	514
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 413
BstNSI	RCATGY	1 cut(s)	411
BstPAI	GACNNNNGTC	1 cut(s)	273
BstPI	GGTNACC	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	149
BstSFI	CTRYAG	1 cut(s)	31
BstV1I	GCAGC	1 cut(s)	45
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	514
BstXI	CCANNNNNNTGG	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	514
Bsu15I	ATCGAT	1 cut(s)	501
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	501
BtsCI	GGATG	2 cut(s)	99, 428
BtsIMutI	CAGTG	1 cut(s)	250
Cac8I	GCNNGC	3 cut(s)	167, 213, 409
Cfr13I	GGNCC	2 cut(s)	242, 316
ClaI	ATCGAT	1 cut(s)	501
CviAII	CATG	3 cut(s)	130, 287, 408
DpnI	GATC	1 cut(s)	516
DpnII	GATC	1 cut(s)	514
Eam1104I	CTCTTC	3 cut(s)	29, 486, 555
EarI	CTCTTC	3 cut(s)	29, 486, 555
Eco32I	GATATC	1 cut(s)	445
Eco47I	GGWCC	2 cut(s)	242, 316
Eco91I	GGTNACC	1 cut(s)	275
EcoO65I	GGTNACC	1 cut(s)	275
EcoRV	GATATC	1 cut(s)	445
Esp3I	CGTCTC	2 cut(s)	118, 232
FaeI	CATG	3 cut(s)	133, 290, 411
FaiI	YATR	5 cut(s)	131, 288, 382, 409, 512
FatI	CATG	3 cut(s)	129, 286, 407
Fnu4HI	GCNGC	1 cut(s)	34
FokI	GGATG	2 cut(s)	106, 415
Fsp4HI	GCNGC	1 cut(s)	34
FspBI	CTAG	3 cut(s)	90, 99, 320
GluI	GCNGC	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	144, 150, 314
Hin1II	CATG	3 cut(s)	133, 290, 411
HinfI	GANTC	3 cut(s)	290, 395, 476
HpaII	CCGG	3 cut(s)	144, 150, 314
HphI	GGTGA	2 cut(s)	269, 357
Hpy188I	TCNGA	7 cut(s)	53, 235, 242, 352, 531, 548, 605
Hpy188III	TCNNGA	1 cut(s)	473
Hpy99I	CGWCG	1 cut(s)	57
HpyAV	CCTTC	2 cut(s)	26, 96
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4IV	ACGT	1 cut(s)	55
HpyCH4V	TGCA	2 cut(s)	33, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 413
HpySE526I	ACGT	1 cut(s)	55
Hsp92II	CATG	3 cut(s)	133, 290, 411
Kzo9I	GATC	1 cut(s)	514
LmnI	GCTCC	1 cut(s)	404
Lsp1109I	GCAGC	1 cut(s)	45
LweI	GCATC	2 cut(s)	364, 437
MaeI	CTAG	3 cut(s)	90, 99, 320
MaeII	ACGT	1 cut(s)	55
MaeIII	GTNAC	2 cut(s)	139, 275
MalI	GATC	1 cut(s)	516
MboI	GATC	1 cut(s)	514
MboII	GAAGA	5 cut(s)	16, 191, 473, 572, 599
MflI	RGATCY	1 cut(s)	514
MluCI	AATT	3 cut(s)	58, 342, 542
MmeI	TCCRAC	4 cut(s)	33, 76, 370, 382
MnlI	CCTC	5 cut(s)	16, 30, 169, 258, 542
MseI	TTAA	3 cut(s)	194, 435, 599
MspI	CCGG	3 cut(s)	144, 150, 314
MspR9I	CCNGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	2 cut(s)	11, 413
NciI	CCSGG	1 cut(s)	151
NdeII	GATC	1 cut(s)	514
NlaIII	CATG	3 cut(s)	133, 290, 411
NlaIV	GGNNCC	1 cut(s)	148
NmuCI	GTSAC	2 cut(s)	139, 275
NspI	RCATGY	1 cut(s)	411
PaeI	GCATGC	1 cut(s)	411
PfeI	GAWTC	3 cut(s)	290, 395, 476
PflMI	CCANNNNNTGG	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	35
PshAI	GACNNNNGTC	1 cut(s)	273
PspEI	GGTNACC	1 cut(s)	275
PspN4I	GGNNCC	1 cut(s)	148
PspPI	GGNCC	2 cut(s)	242, 316
PstI	CTGCAG	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	514
SaqAI	TTAA	3 cut(s)	194, 435, 599
SatI	GCNGC	1 cut(s)	34
Sau3AI	GATC	1 cut(s)	514
Sau96I	GGNCC	2 cut(s)	242, 316
ScrFI	CCNGG	1 cut(s)	151
SfaNI	GCATC	2 cut(s)	364, 437
SfcI	CTRYAG	1 cut(s)	31
SinI	GGWCC	2 cut(s)	242, 316
SphI	GCATGC	1 cut(s)	411
Sse9I	AATT	3 cut(s)	58, 342, 542
SsiI	CCGC	1 cut(s)	273
SspMI	CTAG	3 cut(s)	90, 99, 320
StyD4I	CCNGG	1 cut(s)	149
TaaI	ACNGT	1 cut(s)	185
TaiI	ACGT	1 cut(s)	58
TaqI	TCGA	2 cut(s)	447, 501
TaqII	GACCGA	1 cut(s)	336
TasI	AATT	3 cut(s)	58, 342, 542
TfiI	GAWTC	3 cut(s)	290, 395, 476
Tru1I	TTAA	3 cut(s)	194, 435, 599
Tru9I	TTAA	3 cut(s)	194, 435, 599
TscAI	CASTG	1 cut(s)	257
TseFI	GTSAC	2 cut(s)	139, 275
TseI	GCWGC	1 cut(s)	33
Tsp45I	GTSAC	2 cut(s)	139, 275
TspDTI	ATGAA	2 cut(s)	587, 600
TspRI	CASTG	1 cut(s)	257
Van91I	CCANNNNNTGG	1 cut(s)	172
VpaK11BI	GGWCC	2 cut(s)	242, 316
XapI	RAATTY	2 cut(s)	342, 542
XceI	RCATGY	1 cut(s)	411
XcmI	CCANNNNNNNNNTGG	1 cut(s)	131
XspI	CTAG	3 cut(s)	90, 99, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.