Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036323.1

Orthogroup ID

OG0000740

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 804

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036323.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 418 bp

atgctctcaactttagcagatgggaagatagtgaggggctttgctgggattccatcagagggtcctgtagtgtatgtcggttatcacatgttactgggatttgatatctttccattggtagcgcagttgtgggaacaaaaaggcatccatctgcgagggatagcacatccaatgatgtttatgaaattgaaacaaggaaatttagttgagttacccttttccgacaatttcagactgatgggtgctgttcctgtctcaggaaaaaactttttcaagctactctctacaaagtctcatatcctactctatcctggtggaatgcgtgaggctcttcacaggaagtcagagtttgtgaggatggcagctagatttggagccaaaagcataccctttggtgctgttggagaagatgagtggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010287 GO:0016101 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019432 GO:0033306 GO:0034308 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576 GO:1901615 GO:1903173

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 DAGAT Hydrolase_4

Protein Analysis

139

Amino Acids

15.47

Weight (kDa)

9.69

Isoelectric Point (pI)

20.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02030 AT3G02030 AT3G26820 AT3G26820 AT3G26840 AT5G41120 AT5G41120 AT5G41120 AT5G41130 AT5G41130 AT5G41130
fragaria_vesca	FvH4_3g35400 FvH4_3g39220 FvH4_3g39220 FvH4_3g39270 FvH4_3g39280 FvH4_3g39280 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060
malus_domestica	MD09G1005800.v1.1 MD17G1009900.v1.1
prunus_persica	Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1
pyrus_communis	pycom111g00420
rosa_chinensis	RchiOBHm_Chr2g0176241 RchiOBHm_Chr5g0070671 RchiOBHm_Chr5g0070681 RchiOBHm_Chr5g0070691
rosa_laevigata	RLG00000022394 RLG00000036149 RLG00000036150 RLG00000036152
rosa_multiflora	Rmu_co8466433.1_g000001 Rmu_sc0000249.1_g000001 Rmu_sc0000405.1_g000016 Rmu_sc0005197.1_g000009 Rmu_sc0005197.1_g000015 Rmu_sc0036323.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010480 Rroxscaffold_1G00010530 Rroxscaffold_1G00010550 Rroxscaffold_1G00010560 Rroxscaffold_2G00076650 Rroxscaffold_5G00357250
rosa_rugosa	Rorug02G0592200 Rorug02G0592300 Rorug05G0407500 Rorug05G0407800
rosa_samantha	Rh2AG670700 Rh2BG682200 Rh2CG645000 Rh2DG695800 Rh5AG463200 Rh5AG463300 Rh5AG463400 Rh5BG481200 Rh5CG505400 Rh5CG505500 Rh5DG493300 Rh5DG493600 Rh5DG493700
rosa_wichuraiana	Rw2G055020 Rw5G043110 Rw5G043120 Rw5G043130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	199
AfiI	CCNNNNNNNGG	2 cut(s)	59, 257
AflIII	ACRYGT	1 cut(s)	87
AgsI	TTSAA	2 cut(s)	190, 274
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	2 cut(s)	277, 365
AluI	AGCT	2 cut(s)	277, 365
Alw26I	GTCTC	2 cut(s)	259, 297
ApeKI	GCWGC	1 cut(s)	362
ApoI	RAATTY	1 cut(s)	199
AspLEI	GCGC	1 cut(s)	124
AspS9I	GGNCC	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	62
BbvI	GCAGC	1 cut(s)	374
BccI	CCATC	5 cut(s)	14, 61, 156, 232, 352
BciT130I	CCWGG	1 cut(s)	312
BcoDI	GTCTC	2 cut(s)	259, 297
BfaI	CTAG	1 cut(s)	366
BfmI	CTRYAG	1 cut(s)	66
BisI	GCNGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	364
Bme1390I	CCNGG	1 cut(s)	312
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	2 cut(s)	63, 376
BmrFI	CCNGG	1 cut(s)	312
BmrI	ACTGGG	1 cut(s)	104
BmsI	GCATC	1 cut(s)	153
BmuI	ACTGGG	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 257
Bse1I	ACTGG	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	312
BseGI	GGATG	3 cut(s)	144, 166, 363
BseLI	CCNNNNNNNGG	2 cut(s)	59, 257
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	374
BseYI	CCCAGC	1 cut(s)	44
BslI	CCNNNNNNNGG	2 cut(s)	59, 257
BsmAI	GTCTC	2 cut(s)	259, 297
BsmI	GAATGC	1 cut(s)	324
BspCNI	CTCAG	1 cut(s)	269
BspLI	GGNNCC	2 cut(s)	63, 376
BspQI	GCTCTTC	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	312
Bst6I	CTCTTC	1 cut(s)	336
BstDEI	CTNAG	1 cut(s)	256
BstENI	CCTNNNNNAGG	1 cut(s)	255
BstF5I	GGATG	3 cut(s)	144, 166, 363
BstHHI	GCGC	1 cut(s)	124
BstMAI	GTCTC	2 cut(s)	259, 297
BstNI	CCWGG	1 cut(s)	312
BstNSI	RCATGY	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	310
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	374
BtsCI	GGATG	3 cut(s)	144, 166, 363
CfoI	GCGC	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	62
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	5 cut(s)	39, 277, 329, 365, 377
CviKI_1	RGCY	5 cut(s)	39, 277, 329, 365, 377
DdeI	CTNAG	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco32I	GATATC	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	62
EcoNI	CCTNNNNNAGG	1 cut(s)	255
EcoO109I	RGGNCCY	1 cut(s)	62
EcoRII	CCWGG	1 cut(s)	310
EcoRV	GATATC	1 cut(s)	106
FaeI	CATG	1 cut(s)	91
FaiI	YATR	5 cut(s)	75, 89, 182, 297, 386
FatI	CATG	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	363
FokI	GGATG	3 cut(s)	131, 153, 370
Fsp4HI	GCNGC	1 cut(s)	363
FspBI	CTAG	1 cut(s)	366
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	1 cut(s)	363
GsaI	CCCAGC	1 cut(s)	48
HhaI	GCGC	1 cut(s)	124
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HinfI	GANTC	1 cut(s)	49
Hpy188I	TCNGA	4 cut(s)	58, 223, 233, 346
Hpy188III	TCNNGA	1 cut(s)	258
HpyF3I	CTNAG	1 cut(s)	256
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	1 cut(s)	122
LguI	GCTCTTC	1 cut(s)	336
LmnI	GCTCC	1 cut(s)	374
LpnPI	CCDG	8 cut(s)	30, 78, 80, 243, 264, 297, 322, 324
Lsp1109I	GCAGC	1 cut(s)	374
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	1 cut(s)	366
MaeIII	GTNAC	2 cut(s)	90, 210
MboII	GAAGA	2 cut(s)	37, 323
MluCI	AATT	3 cut(s)	185, 199, 226
MmeI	TCCRAC	2 cut(s)	246, 382
MnlI	CCTC	5 cut(s)	27, 52, 149, 319, 348
MspR9I	CCNGG	1 cut(s)	312
Mva1269I	GAATGC	1 cut(s)	324
MvaI	CCWGG	1 cut(s)	312
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	2 cut(s)	63, 376
NspI	RCATGY	1 cut(s)	91
PciI	ACATGT	1 cut(s)	87
PciSI	GCTCTTC	1 cut(s)	336
PctI	GAATGC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	364
PpuMI	RGGWCCY	1 cut(s)	62
PscI	ACATGT	1 cut(s)	87
Psp5II	RGGWCCY	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	310
PspFI	CCCAGC	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	63, 376
PspPI	GGNCC	1 cut(s)	62
PspPPI	RGGWCCY	1 cut(s)	62
SapI	GCTCTTC	1 cut(s)	336
SatI	GCNGC	1 cut(s)	363
Sau96I	GGNCC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	312
SetI	ASST	2 cut(s)	279, 367
SfaNI	GCATC	1 cut(s)	153
SfcI	CTRYAG	1 cut(s)	66
SinI	GGWCC	1 cut(s)	62
Sse9I	AATT	3 cut(s)	185, 199, 226
SspMI	CTAG	1 cut(s)	366
StyD4I	CCNGG	1 cut(s)	310
TasI	AATT	3 cut(s)	185, 199, 226
TfiI	GAWTC	1 cut(s)	49
TseI	GCWGC	1 cut(s)	362
TspDTI	ATGAA	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	62
XagI	CCTNNNNNAGG	1 cut(s)	255
XapI	RAATTY	1 cut(s)	199
XceI	RCATGY	1 cut(s)	91
XspI	CTAG	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.