Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000249.1

Orthogroup ID

OG0000740

Physical Location & Seq

Genomic Coordinates Forward (+)

56 .. 1137

Gene Structure 1082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000249.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atggcagctagatttggagccaaaatcgtaccttttggtgctgttggagaagatgatattggtgatctacttctcgattatgaagaccagatgaaaattcctttccttaggaaatctatagaggacttaacggctgaagctgcaaaagtgaggtccaccgttgatggggagattggaaaccaagctatgcaccttccaggaattgtaccgaaatttcctggccggttttattataaatttgggaaaccaattgaaacagcagggaggaaggaggaattacgagacagggagaaagctcatgaactatatttggaagtaaaatcggaggttgagaagtcccttgcttatttgcagaaaaaaagagaaagtgatccttacagaaacctcgcggctcggttacaataccaggccatacacgggtttgcgtctgaagttccttcatttgaccttgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010287 GO:0016101 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019432 GO:0033306 GO:0034308 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576 GO:1901615 GO:1903173

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 DAGAT Hydrolase_4

Protein Analysis

151

Amino Acids

17.11

Weight (kDa)

5.71

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02030 AT3G02030 AT3G26820 AT3G26820 AT3G26840 AT5G41120 AT5G41120 AT5G41120 AT5G41130 AT5G41130 AT5G41130
fragaria_vesca	FvH4_3g35400 FvH4_3g39220 FvH4_3g39220 FvH4_3g39270 FvH4_3g39280 FvH4_3g39280 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060
malus_domestica	MD09G1005800.v1.1 MD17G1009900.v1.1
prunus_persica	Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1
pyrus_communis	pycom111g00420
rosa_chinensis	RchiOBHm_Chr2g0176241 RchiOBHm_Chr5g0070671 RchiOBHm_Chr5g0070681 RchiOBHm_Chr5g0070691
rosa_laevigata	RLG00000022394 RLG00000036149 RLG00000036150 RLG00000036152
rosa_multiflora	Rmu_co8466433.1_g000001 Rmu_sc0000249.1_g000001 Rmu_sc0000405.1_g000016 Rmu_sc0005197.1_g000009 Rmu_sc0005197.1_g000015 Rmu_sc0036323.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010480 Rroxscaffold_1G00010530 Rroxscaffold_1G00010550 Rroxscaffold_1G00010560 Rroxscaffold_2G00076650 Rroxscaffold_5G00357250
rosa_rugosa	Rorug02G0592200 Rorug02G0592300 Rorug05G0407500 Rorug05G0407800
rosa_samantha	Rh2AG670700 Rh2BG682200 Rh2CG645000 Rh2DG695800 Rh5AG463200 Rh5AG463300 Rh5AG463400 Rh5BG481200 Rh5CG505400 Rh5CG505500 Rh5DG493300 Rh5DG493600 Rh5DG493700
rosa_wichuraiana	Rw2G055020 Rw5G043110 Rw5G043120 Rw5G043130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	234
AccII	CGCG	1 cut(s)	389
AciI	CCGC	1 cut(s)	389
AclWI	GGATC	1 cut(s)	365
AcoI	YGGCCR	1 cut(s)	220
AcsI	RAATTY	3 cut(s)	96, 212, 236
AcuI	CTGAAG	2 cut(s)	156, 450
AfaI	GTAC	2 cut(s)	30, 207
AfiI	CCNNNNNNNGG	2 cut(s)	165, 417
AgsI	TTSAA	1 cut(s)	254
AjnI	CCWGG	3 cut(s)	196, 217, 405
AjuI	GAANNNNNNNTTGG	2 cut(s)	42, 74
AluBI	AGCT	4 cut(s)	8, 140, 185, 296
AluI	AGCT	4 cut(s)	8, 140, 185, 296
Alw26I	GTCTC	1 cut(s)	276
AlwI	GGATC	1 cut(s)	365
AoxI	GGCC	2 cut(s)	220, 408
ApeKI	GCWGC	2 cut(s)	5, 140
ApoI	RAATTY	3 cut(s)	96, 212, 236
ArsI	GACNNNNNNTTYG	2 cut(s)	137, 169
AspS9I	GGNCC	1 cut(s)	153
AsuHPI	GGTGA	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	153
AxyI	CCTNAGG	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	17, 127
BccI	CCATC	1 cut(s)	158
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	3 cut(s)	198, 219, 407
BcoDI	GTCTC	1 cut(s)	276
BfaI	CTAG	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	117
BisI	GCNGC	3 cut(s)	6, 141, 390
BlsI	GCNGC	3 cut(s)	7, 142, 391
Bme1390I	CCNGG	3 cut(s)	198, 219, 407
Bme18I	GGWCC	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	1 cut(s)	19
BmrFI	CCNGG	3 cut(s)	198, 219, 407
BpiI	GAAGAC	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 417
Bse118I	RCCGGY	1 cut(s)	222
Bse21I	CCTNAGG	1 cut(s)	107
BseBI	CCWGG	3 cut(s)	198, 219, 407
BseLI	CCNNNNNNNGG	2 cut(s)	165, 417
BseXI	GCAGC	2 cut(s)	17, 127
Bsh1236I	CGCG	1 cut(s)	389
BshFI	GGCC	2 cut(s)	222, 410
BsiSI	CCGG	1 cut(s)	223
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	2 cut(s)	165, 417
BsmAI	GTCTC	1 cut(s)	276
BsmFI	GGGAC	1 cut(s)	322
BsnI	GGCC	2 cut(s)	222, 410
Bsp143I	GATC	2 cut(s)	64, 370
BspACI	CCGC	1 cut(s)	389
BspANI	GGCC	2 cut(s)	222, 410
BspFNI	CGCG	1 cut(s)	389
BspHI	TCATGA	1 cut(s)	298
BspLI	GGNNCC	1 cut(s)	19
BspPI	GGATC	1 cut(s)	365
BsrFI	RCCGGY	1 cut(s)	222
BssAI	RCCGGY	1 cut(s)	222
BssMI	GATC	2 cut(s)	64, 370
Bst2UI	CCWGG	3 cut(s)	198, 219, 407
Bst4CI	ACNGT	1 cut(s)	160
BstDEI	CTNAG	1 cut(s)	107
BstFNI	CGCG	1 cut(s)	389
BstKTI	GATC	2 cut(s)	67, 373
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	2 cut(s)	64, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNI	CCWGG	3 cut(s)	198, 219, 407
BstSCI	CCNGG	3 cut(s)	196, 217, 405
BstSFI	CTRYAG	1 cut(s)	117
BstUI	CGCG	1 cut(s)	389
BstV1I	GCAGC	2 cut(s)	17, 127
BstV2I	GAAGAC	1 cut(s)	90
Bsu36I	CCTNAGG	1 cut(s)	107
BsuRI	GGCC	2 cut(s)	222, 410
CciI	TCATGA	1 cut(s)	298
Cfr10I	RCCGGY	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	153
CseI	GACGC	1 cut(s)	414
Csp6I	GTAC	2 cut(s)	29, 206
CviAII	CATG	1 cut(s)	299
CviJI	RGCY	9 cut(s)	8, 20, 134, 140, 185, 222, 296, 392, 410
CviKI_1	RGCY	9 cut(s)	8, 20, 134, 140, 185, 222, 296, 392, 410
CviQI	GTAC	2 cut(s)	29, 206
DdeI	CTNAG	1 cut(s)	107
DpnI	GATC	2 cut(s)	66, 372
DpnII	GATC	2 cut(s)	64, 370
EaeI	YGGCCR	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	153
Eco57I	CTGAAG	2 cut(s)	156, 450
Eco81I	CCTNAGG	1 cut(s)	107
EcoRII	CCWGG	3 cut(s)	196, 217, 405
FaeI	CATG	1 cut(s)	302
FaiI	YATR	7 cut(s)	81, 119, 188, 234, 300, 307, 413
FalI	AAGNNNNNCTT	2 cut(s)	358, 390
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	1 cut(s)	298
Fnu4HI	GCNGC	3 cut(s)	6, 141, 390
Fsp4HI	GCNGC	3 cut(s)	6, 141, 390
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	3 cut(s)	6, 141, 390
HaeIII	GGCC	2 cut(s)	222, 410
HapII	CCGG	1 cut(s)	223
HgaI	GACGC	1 cut(s)	414
Hin1II	CATG	1 cut(s)	302
HpaII	CCGG	1 cut(s)	223
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	156
Hpy188I	TCNGA	2 cut(s)	325, 430
Hpy188III	TCNNGA	2 cut(s)	74, 299
Hpy8I	GTNNAC	1 cut(s)	156
HpyAV	CCTTC	3 cut(s)	203, 262, 447
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4V	TGCA	3 cut(s)	143, 190, 352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	1 cut(s)	107
Hsp92II	CATG	1 cut(s)	302
Kzo9I	GATC	2 cut(s)	64, 370
LmnI	GCTCC	1 cut(s)	17
Lsp1109I	GCAGC	2 cut(s)	17, 127
MaeI	CTAG	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	396
MalI	GATC	2 cut(s)	66, 372
MboI	GATC	2 cut(s)	64, 370
MboII	GAAGA	2 cut(s)	62, 95
MfeI	CAATTG	1 cut(s)	249
MluCI	AATT	6 cut(s)	96, 201, 212, 236, 249, 275
MmeI	TCCRAC	1 cut(s)	25
MnlI	CCTC	6 cut(s)	115, 144, 258, 265, 319, 395
MseI	TTAA	2 cut(s)	128, 454
MspI	CCGG	1 cut(s)	223
MspR9I	CCNGG	3 cut(s)	198, 219, 407
MunI	CAATTG	1 cut(s)	249
MvaI	CCWGG	3 cut(s)	198, 219, 407
MvnI	CGCG	1 cut(s)	389
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	2 cut(s)	64, 370
NlaIII	CATG	1 cut(s)	302
NlaIV	GGNNCC	1 cut(s)	19
PagI	TCATGA	1 cut(s)	298
PfoI	TCCNGGA	1 cut(s)	196
PkrI	GCNGC	3 cut(s)	7, 142, 391
PsiI	TTATAA	1 cut(s)	234
Psp6I	CCWGG	3 cut(s)	196, 217, 405
PspGI	CCWGG	3 cut(s)	196, 217, 405
PspN4I	GGNNCC	1 cut(s)	19
PspPI	GGNCC	1 cut(s)	153
RsaI	GTAC	2 cut(s)	30, 207
RsaNI	GTAC	2 cut(s)	29, 206
SaqAI	TTAA	2 cut(s)	128, 454
SatI	GCNGC	3 cut(s)	6, 141, 390
Sau3AI	GATC	2 cut(s)	64, 370
Sau96I	GGNCC	1 cut(s)	153
ScrFI	CCNGG	3 cut(s)	198, 219, 407
SfcI	CTRYAG	1 cut(s)	117
SinI	GGWCC	1 cut(s)	153
Sse9I	AATT	6 cut(s)	96, 201, 212, 236, 249, 275
SsiI	CCGC	1 cut(s)	389
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	3 cut(s)	196, 217, 405
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	1 cut(s)	75
TasI	AATT	6 cut(s)	96, 201, 212, 236, 249, 275
TauI	GCSGC	1 cut(s)	392
Tru1I	TTAA	2 cut(s)	128, 454
Tru9I	TTAA	2 cut(s)	128, 454
TseI	GCWGC	2 cut(s)	5, 140
TspDTI	ATGAA	4 cut(s)	96, 107, 315, 429
VpaK11BI	GGWCC	1 cut(s)	153
XapI	RAATTY	3 cut(s)	96, 212, 236
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.