Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000740

Physical Location & Seq

Genomic Coordinates Reverse (-)

79259343 .. 79278671

Gene Structure 19329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG463300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCCAACTTACCCAATCATAGTCTTCCTCATGTATTCCAGGCTCTTGCTGATATCTTACCAACACTTCTGTGGAAGCTAGAAATGATTAATTCAGCTTCATCGTATGCCAATTCACGCCTCCATGCTGTGAAAGCTCAAATGCTGATACTTTCCAGTGGAAGGGATCCATTGCTACCTAGTCAAGAGGAAGGTCTAAGACTCCAACGGCTGCTAGCAAATTGCGAGATCTGTACGTTTCAAGACTGCAGCCATTTCCTCGTCTTGGAAGATGCTTTTGATTTGGTAACTGTCATCAAGCAGGTTGGTGTCTATCGTCGTTCAAAAGAACGAGATTTTGTTTCGGATTACATACCTCCATCCCCTTCCGAATTAAGAACTTTACGGGACAATAACAGATGGATTAACATCATGAGCCCAGTGATGCTCTCGACTTTAGCGGATGGGACGATAGTGAGGGGCTTTGCTGGGATTCCACCAGAGGGTCCGGTATTATATGTCGGTTATCACATGTTACTGGGATTTGATATCGTTCCATTGGCAGCACAGTTGTGGGAACAAAAAGGCATCCATCTGCGAGGGATAGCACATCCAATGATGTTTATGAAATTGAAACAAGGAAATTTAGTTGAGTTACCCTTTTCCGACTATTTCAGACTGATGGGTGCTGTTCCTGTCTCGGGAAAAAACTTTTTCAAGCTACTCTCTACAAAGTCTCATATCTTACTGTATCCTGGTGGAATTCGTGAGGCTCTTCACAGAAAGGGGGAAGCATACAAGTTATTCTGGCCAGAACGGTCAGAGTTTGTGAGGATGGCAGCTAGATTTGGAGCGAAAATCGTACCTTTTGGTACGGTTGGTGAAGATGATTTTTTTGACATATTACTCGATTATGAAGACCAGATGAAAATTCCTTTCCTCAAGAAATATATAGATGCATTATCGGATGAAGTTGGAAAGCTGAGGACTACCGTTGATGGGGAGGTAGGAAACCAAGATGTATACTTCCCAGGAATTCTACCAAAATCTCCCGGCCGGTTTTATTATTATTTTGGGAAAACAATTGAAACAGACGGGAGGAAGCAGGAATTACGAGACAGGCAGAAAGCTCAAGAGTTGTATTTACAAGTGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010287 GO:0016101 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019432 GO:0033306 GO:0034308 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576 GO:1901615 GO:1903173

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 DAGAT Hydrolase_4

Protein Analysis

378

Amino Acids

43.05

Weight (kDa)

8.25

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAGAT	PF03982	213 - 300	5.8e-10	Diacylglycerol acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02030 AT3G02030 AT3G26820 AT3G26820 AT3G26840 AT5G41120 AT5G41120 AT5G41120 AT5G41130 AT5G41130 AT5G41130
fragaria_vesca	FvH4_3g35400 FvH4_3g39220 FvH4_3g39220 FvH4_3g39270 FvH4_3g39280 FvH4_3g39280 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060
malus_domestica	MD09G1005800.v1.1 MD17G1009900.v1.1
prunus_persica	Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1
pyrus_communis	pycom111g00420
rosa_chinensis	RchiOBHm_Chr2g0176241 RchiOBHm_Chr5g0070671 RchiOBHm_Chr5g0070681 RchiOBHm_Chr5g0070691
rosa_laevigata	RLG00000022394 RLG00000036149 RLG00000036150 RLG00000036152
rosa_multiflora	Rmu_co8466433.1_g000001 Rmu_sc0000249.1_g000001 Rmu_sc0000405.1_g000016 Rmu_sc0005197.1_g000009 Rmu_sc0005197.1_g000015 Rmu_sc0036323.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010480 Rroxscaffold_1G00010530 Rroxscaffold_1G00010550 Rroxscaffold_1G00010560 Rroxscaffold_2G00076650 Rroxscaffold_5G00357250
rosa_rugosa	Rorug02G0592200 Rorug02G0592300 Rorug05G0407500 Rorug05G0407800
rosa_samantha	Rh2AG670700 Rh2BG682200 Rh2CG645000 Rh2DG695800 Rh5AG463200 Rh5AG463300 Rh5AG463400 Rh5BG481200 Rh5CG505400 Rh5CG505500 Rh5DG493300 Rh5DG493600 Rh5DG493700
rosa_wichuraiana	Rw2G055020 Rw5G043110 Rw5G043120 Rw5G043130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	292
AccI	GTMKAC	1 cut(s)	1002
AciI	CCGC	1 cut(s)	440
AclWI	GGATC	2 cut(s)	161, 174
AcoI	YGGCCR	3 cut(s)	3, 788, 1033
AcsI	RAATTY	4 cut(s)	622, 741, 909, 1014
AfaI	GTAC	3 cut(s)	235, 843, 853
AfiI	CCNNNNNNNGG	5 cut(s)	162, 265, 482, 680, 978
AflIII	ACRYGT	1 cut(s)	510
AgsI	TTSAA	5 cut(s)	242, 324, 613, 697, 1067
AjnI	CCWGG	3 cut(s)	39, 733, 1009
AleI	CACNNNNGTG	2 cut(s)	70, 550
AluBI	AGCT	7 cut(s)	79, 98, 137, 700, 821, 961, 1109
AluI	AGCT	7 cut(s)	79, 98, 137, 700, 821, 961, 1109
Alw26I	GTCTC	3 cut(s)	682, 720, 1089
AlwI	GGATC	2 cut(s)	161, 174
Ama87I	CYCGRG	1 cut(s)	679
AoxI	GGCC	3 cut(s)	3, 788, 1033
ApeKI	GCWGC	4 cut(s)	211, 249, 542, 818
ApoI	RAATTY	4 cut(s)	622, 741, 909, 1014
AseI	ATTAAT	1 cut(s)	90
AspS9I	GGNCC	1 cut(s)	485
AsuC2I	CCSGG	1 cut(s)	1032
AsuHPI	GGTGA	1 cut(s)	872
AsuNHI	GCTAGC	1 cut(s)	214
AvaI	CYCGRG	1 cut(s)	679
AvaII	GGWCC	1 cut(s)	485
BalI	TGGCCA	2 cut(s)	5, 790
BamHI	GGATCC	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	419
BbsI	GAAGAC	2 cut(s)	17, 903
BbvCI	CCTCAGC	1 cut(s)	962
BbvI	GCAGC	4 cut(s)	198, 261, 554, 830
BccI	CCATC	7 cut(s)	367, 393, 437, 579, 655, 808, 971
BceAI	ACGGC	1 cut(s)	224
BciT130I	CCWGG	3 cut(s)	41, 735, 1011
BciVI	GTATCC	1 cut(s)	741
BcnI	CCSGG	1 cut(s)	1032
BcoDI	GTCTC	3 cut(s)	682, 720, 1089
BfaI	CTAG	4 cut(s)	80, 180, 215, 822
BfmI	CTRYAG	1 cut(s)	247
BfuAI	ACCTGC	1 cut(s)	292
BfuI	GTATCC	1 cut(s)	741
BglII	AGATCT	1 cut(s)	228
BisI	GCNGC	4 cut(s)	212, 250, 543, 819
BlsI	GCNGC	4 cut(s)	213, 251, 544, 820
Bme1390I	CCNGG	4 cut(s)	41, 735, 1011, 1032
Bme18I	GGWCC	1 cut(s)	485
BmeT110I	CYCGRG	1 cut(s)	679
BmgT120I	GGNCC	1 cut(s)	485
BmiI	GGNNCC	2 cut(s)	168, 486
BmrFI	CCNGG	4 cut(s)	41, 735, 1011, 1032
BmrI	ACTGGG	2 cut(s)	413, 527
BmsI	GCATC	4 cut(s)	262, 414, 576, 925
BmtI	GCTAGC	1 cut(s)	218
BmuI	ACTGGG	2 cut(s)	413, 527
BpiI	GAAGAC	2 cut(s)	17, 903
Bpu10I	CCTNAGC	1 cut(s)	962
BpuEI	CTTGAG	2 cut(s)	905, 1095
BpuMI	CCSGG	1 cut(s)	1032
BsaBI	GATNNNNATC	1 cut(s)	407
BsaJI	CCNNGG	1 cut(s)	1009
BsaWI	WCCGGW	1 cut(s)	487
Bsc4I	CCNNNNNNNGG	5 cut(s)	162, 265, 482, 680, 978
Bse118I	RCCGGY	1 cut(s)	1035
Bse1I	ACTGG	3 cut(s)	156, 419, 522
Bse3DI	GCAATG	1 cut(s)	170
Bse8I	GATNNNNATC	1 cut(s)	407
BseBI	CCWGG	3 cut(s)	41, 735, 1011
BseDI	CCNNGG	1 cut(s)	1009
BseGI	GGATG	6 cut(s)	359, 448, 567, 589, 819, 952
BseJI	GATNNNNATC	1 cut(s)	407
BseLI	CCNNNNNNNGG	5 cut(s)	162, 265, 482, 680, 978
BseMI	GCAATG	1 cut(s)	170
BseMII	CTCAG	1 cut(s)	953
BseNI	ACTGG	3 cut(s)	156, 419, 522
BseX3I	CGGCCG	1 cut(s)	1033
BseXI	GCAGC	4 cut(s)	198, 261, 554, 830
BseYI	CCCAGC	1 cut(s)	467
Bsh1285I	CGRYCG	1 cut(s)	1036
BshFI	GGCC	3 cut(s)	5, 790, 1035
BsiEI	CGRYCG	1 cut(s)	1036
BsiHKCI	CYCGRG	1 cut(s)	679
BsiSI	CCGG	3 cut(s)	488, 1032, 1036
BslFI	GGGAC	2 cut(s)	401, 460
BslI	CCNNNNNNNGG	5 cut(s)	162, 265, 482, 680, 978
BsmAI	GTCTC	3 cut(s)	682, 720, 1089
BsmFI	GGGAC	2 cut(s)	401, 460
BsnI	GGCC	3 cut(s)	5, 790, 1035
BsoBI	CYCGRG	1 cut(s)	679
Bsp1286I	GDGCHC	1 cut(s)	419
Bsp143I	GATC	2 cut(s)	166, 228
BspACI	CCGC	1 cut(s)	440
BspANI	GGCC	3 cut(s)	5, 790, 1035
BspCNI	CTCAG	1 cut(s)	954
BspHI	TCATGA	1 cut(s)	411
BspLI	GGNNCC	2 cut(s)	168, 486
BspMAI	CTGCAG	1 cut(s)	251
BspMI	ACCTGC	1 cut(s)	292
BspOI	GCTAGC	1 cut(s)	218
BspPI	GGATC	2 cut(s)	161, 174
BspQI	GCTCTTC	1 cut(s)	759
BsrDI	GCAATG	1 cut(s)	170
BsrFI	RCCGGY	1 cut(s)	1035
BsrI	ACTGG	3 cut(s)	156, 419, 522
BssAI	RCCGGY	1 cut(s)	1035
BssECI	CCNNGG	1 cut(s)	1009
BssMI	GATC	2 cut(s)	166, 228
BssNAI	GTATAC	1 cut(s)	1003
Bst1107I	GTATAC	1 cut(s)	1003
Bst2UI	CCWGG	3 cut(s)	41, 735, 1011
Bst4CI	ACNGT	6 cut(s)	292, 549, 729, 798, 856, 973
Bst6I	CTCTTC	1 cut(s)	759
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	2 cut(s)	197, 962
BstF5I	GGATG	6 cut(s)	359, 448, 567, 589, 819, 952
BstKTI	GATC	2 cut(s)	169, 231
BstMAI	GTCTC	3 cut(s)	682, 720, 1089
BstMBI	GATC	2 cut(s)	166, 228
BstMCI	CGRYCG	1 cut(s)	1036
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNI	CCWGG	3 cut(s)	41, 735, 1011
BstNSI	RCATGY	1 cut(s)	514
BstSCI	CCNGG	4 cut(s)	39, 733, 1009, 1030
BstSFI	CTRYAG	1 cut(s)	247
BstV1I	GCAGC	4 cut(s)	198, 261, 554, 830
BstV2I	GAAGAC	2 cut(s)	17, 903
BstX2I	RGATCY	2 cut(s)	166, 228
BstYI	RGATCY	2 cut(s)	166, 228
BstZ17I	GTATAC	1 cut(s)	1003
BstZI	CGGCCG	1 cut(s)	1033
BsuI	GTATCC	1 cut(s)	741
BsuRI	GGCC	3 cut(s)	5, 790, 1035
BtsCI	GGATG	6 cut(s)	359, 448, 567, 589, 819, 952
BtsIMutI	CAGTG	2 cut(s)	163, 426
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	1 cut(s)	216
CciI	TCATGA	1 cut(s)	411
Cfr10I	RCCGGY	1 cut(s)	1035
Cfr13I	GGNCC	1 cut(s)	485
Csp6I	GTAC	3 cut(s)	234, 842, 852
CviAII	CATG	4 cut(s)	32, 125, 412, 511
CviQI	GTAC	3 cut(s)	234, 842, 852
DdeI	CTNAG	2 cut(s)	197, 962
DpnI	GATC	2 cut(s)	168, 230
DpnII	GATC	2 cut(s)	166, 228
EaeI	YGGCCR	3 cut(s)	3, 788, 1033
EagI	CGGCCG	1 cut(s)	1033
Eam1104I	CTCTTC	1 cut(s)	759
EarI	CTCTTC	1 cut(s)	759
EclXI	CGGCCG	1 cut(s)	1033
Eco24I	GRGCYC	1 cut(s)	419
Eco32I	GATATC	2 cut(s)	55, 529
Eco47I	GGWCC	1 cut(s)	485
Eco52I	CGGCCG	1 cut(s)	1033
Eco88I	CYCGRG	1 cut(s)	679
EcoRI	GAATTC	2 cut(s)	741, 1014
EcoRII	CCWGG	3 cut(s)	39, 733, 1009
EcoRV	GATATC	2 cut(s)	55, 529
EcoT22I	ATGCAT	1 cut(s)	940
EcoT38I	GRGCYC	1 cut(s)	419
FaeI	CATG	4 cut(s)	35, 128, 415, 514
FaqI	GGGAC	2 cut(s)	401, 460
FatI	CATG	4 cut(s)	31, 124, 411, 510
FblI	GTMKAC	1 cut(s)	1002
Fnu4HI	GCNGC	4 cut(s)	212, 250, 543, 819
FokI	GGATG	6 cut(s)	346, 455, 554, 576, 826, 959
FriOI	GRGCYC	1 cut(s)	419
Fsp4HI	GCNGC	4 cut(s)	212, 250, 543, 819
FspBI	CTAG	4 cut(s)	80, 180, 215, 822
GluI	GCNGC	4 cut(s)	212, 250, 543, 819
GsaI	CCCAGC	1 cut(s)	471
HaeIII	GGCC	3 cut(s)	5, 790, 1035
HapII	CCGG	3 cut(s)	488, 1032, 1036
Hin1II	CATG	4 cut(s)	35, 128, 415, 514
HinfI	GANTC	2 cut(s)	201, 472
HpaII	CCGG	3 cut(s)	488, 1032, 1036
HphI	GGTGA	1 cut(s)	872
Hpy166II	GTNNAC	1 cut(s)	1003
Hpy188I	TCNGA	6 cut(s)	346, 370, 646, 656, 802, 946
Hpy188III	TCNNGA	8 cut(s)	185, 242, 412, 430, 681, 746, 922, 1112
Hpy8I	GTNNAC	1 cut(s)	1003
Hpy99I	CGWCG	1 cut(s)	321
HpyAV	CCTTC	3 cut(s)	156, 185, 375
HpyCH4III	ACNGT	6 cut(s)	292, 549, 729, 798, 856, 973
HpyCH4IV	ACGT	1 cut(s)	236
HpyCH4V	TGCA	2 cut(s)	249, 938
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	2 cut(s)	197, 962
HpySE526I	ACGT	1 cut(s)	236
Hsp92II	CATG	4 cut(s)	35, 128, 415, 514
Kzo9I	GATC	2 cut(s)	166, 228
LguI	GCTCTTC	1 cut(s)	759
LmnI	GCTCC	1 cut(s)	830
Lsp1109I	GCAGC	4 cut(s)	198, 261, 554, 830
LweI	GCATC	4 cut(s)	262, 414, 576, 925
MaeI	CTAG	4 cut(s)	80, 180, 215, 822
MaeII	ACGT	1 cut(s)	236
MaeIII	GTNAC	3 cut(s)	286, 513, 633
MalI	GATC	2 cut(s)	168, 230
MboI	GATC	2 cut(s)	166, 228
MboII	GAAGA	5 cut(s)	17, 281, 746, 875, 908
MfeI	CAATTG	1 cut(s)	1062
MflI	RGATCY	2 cut(s)	166, 228
MhlI	GDGCHC	1 cut(s)	419
MlsI	TGGCCA	2 cut(s)	5, 790
MluNI	TGGCCA	2 cut(s)	5, 790
MlyI	GAGTC	1 cut(s)	195
MmeI	TCCRAC	3 cut(s)	229, 669, 934
Mox20I	TGGCCA	2 cut(s)	5, 790
Mph1103I	ATGCAT	1 cut(s)	940
MscI	TGGCCA	2 cut(s)	5, 790
MseI	TTAA	3 cut(s)	90, 374, 405
MslI	CAYNNNNRTG	2 cut(s)	70, 550
Msp20I	TGGCCA	2 cut(s)	5, 790
MspI	CCGG	3 cut(s)	488, 1032, 1036
MspR9I	CCNGG	4 cut(s)	41, 735, 1011, 1032
MunI	CAATTG	1 cut(s)	1062
MvaI	CCWGG	3 cut(s)	41, 735, 1011
MwoI	GCNNNNNNNGC	1 cut(s)	134
NciI	CCSGG	1 cut(s)	1032
NdeII	GATC	2 cut(s)	166, 228
NheI	GCTAGC	1 cut(s)	214
NlaIII	CATG	4 cut(s)	35, 128, 415, 514
NlaIV	GGNNCC	2 cut(s)	168, 486
NsiI	ATGCAT	1 cut(s)	940
NspI	RCATGY	1 cut(s)	514
OliI	CACNNNNGTG	2 cut(s)	70, 550
PagI	TCATGA	1 cut(s)	411
PciI	ACATGT	1 cut(s)	510
PciSI	GCTCTTC	1 cut(s)	759
PfeI	GAWTC	1 cut(s)	472
PkrI	GCNGC	4 cut(s)	213, 251, 544, 820
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
PscI	ACATGT	1 cut(s)	510
PshBI	ATTAAT	1 cut(s)	90
Psp6I	CCWGG	3 cut(s)	39, 733, 1009
PspFI	CCCAGC	1 cut(s)	467
PspGI	CCWGG	3 cut(s)	39, 733, 1009
PspN4I	GGNNCC	2 cut(s)	168, 486
PspPI	GGNCC	1 cut(s)	485
PstI	CTGCAG	1 cut(s)	251
PsuI	RGATCY	2 cut(s)	166, 228
RsaI	GTAC	3 cut(s)	235, 843, 853
RsaNI	GTAC	3 cut(s)	234, 842, 852
RseI	CAYNNNNRTG	2 cut(s)	70, 550
SapI	GCTCTTC	1 cut(s)	759
SaqAI	TTAA	3 cut(s)	90, 374, 405
SatI	GCNGC	4 cut(s)	212, 250, 543, 819
Sau3AI	GATC	2 cut(s)	166, 228
Sau96I	GGNCC	1 cut(s)	485
SchI	GAGTC	1 cut(s)	195
ScrFI	CCNGG	4 cut(s)	41, 735, 1011, 1032
SduI	GDGCHC	1 cut(s)	419
SfaNI	GCATC	4 cut(s)	262, 414, 576, 925
SfcI	CTRYAG	1 cut(s)	247
SinI	GGWCC	1 cut(s)	485
SmiMI	CAYNNNNRTG	2 cut(s)	70, 550
SmlI	CTYRAG	2 cut(s)	920, 1110
SmoI	CTYRAG	2 cut(s)	920, 1110
SsiI	CCGC	1 cut(s)	440
SspMI	CTAG	4 cut(s)	80, 180, 215, 822
StyD4I	CCNGG	4 cut(s)	39, 733, 1009, 1030
TaaI	ACNGT	6 cut(s)	292, 549, 729, 798, 856, 973
TaiI	ACGT	1 cut(s)	239
TaqI	TCGA	2 cut(s)	431, 888
TfiI	GAWTC	1 cut(s)	472
Tru1I	TTAA	3 cut(s)	90, 374, 405
Tru9I	TTAA	3 cut(s)	90, 374, 405
TscAI	CASTG	2 cut(s)	163, 426
TseI	GCWGC	4 cut(s)	211, 249, 542, 818
TspDTI	ATGAA	5 cut(s)	90, 620, 909, 920, 963
TspRI	CASTG	2 cut(s)	163, 426
VpaK11BI	GGWCC	1 cut(s)	485
VspI	ATTAAT	1 cut(s)	90
XapI	RAATTY	4 cut(s)	622, 741, 909, 1014
XceI	RCATGY	1 cut(s)	514
XcmI	CCANNNNNNNNNTGG	1 cut(s)	69
XmiI	GTMKAC	1 cut(s)	1002
XspI	CTAG	4 cut(s)	80, 180, 215, 822
Zsp2I	ATGCAT	1 cut(s)	940

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.