Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005197.1

Orthogroup ID

OG0000740

Physical Location & Seq

Genomic Coordinates Forward (+)

29173 .. 31031

Gene Structure 1859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005197.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atgctctcaactttagcagatgggaagatagtgaggggctttgctgggattgcatcagagggtcctgtagtgtatgtcggttatcacatgttactgggatttgatatctttccattggtagcgcagttgtgggaacaaaaaggcatccatctgcgagggatagcacatccaatgatgtttatgaaattgaaacaaggaaatttagttgagttacccttttccgacaatttcagactgatgggtgctgttcctgtctcaggaaaaaactttttcaagctactctctacaaagtctcatatcctactctatcctggtggaatgcgtgaggctcttcacaggaagcttctgatcgcccatgcacgggacgaggagggagacgcgacggtgagtgcagcgtcggctccgccgagtttttgcagtttccggccacctcctgggccactttcgcttggaagggcaattttcggcattttggaggtttcattaatctacaggaactctcgctacagtatttcggtggcttctggcttctggcttctggaagctgcattcttcagcttttgcttatctaaggaagccacagcagcttctgaaaaaagctgccaagaagctgagttaccaaacaccaatttgaacctggcttataagcacaggagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010287 GO:0016101 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019432 GO:0033306 GO:0034308 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576 GO:1901615 GO:1903173

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 DAGAT Hydrolase_4

Protein Analysis

219

Amino Acids

24.02

Weight (kDa)

9.17

Isoelectric Point (pI)

27.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02030 AT3G02030 AT3G26820 AT3G26820 AT3G26840 AT5G41120 AT5G41120 AT5G41120 AT5G41130 AT5G41130 AT5G41130
fragaria_vesca	FvH4_3g35400 FvH4_3g39220 FvH4_3g39220 FvH4_3g39270 FvH4_3g39280 FvH4_3g39280 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060
malus_domestica	MD09G1005800.v1.1 MD17G1009900.v1.1
prunus_persica	Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1
pyrus_communis	pycom111g00420
rosa_chinensis	RchiOBHm_Chr2g0176241 RchiOBHm_Chr5g0070671 RchiOBHm_Chr5g0070681 RchiOBHm_Chr5g0070691
rosa_laevigata	RLG00000022394 RLG00000036149 RLG00000036150 RLG00000036152
rosa_multiflora	Rmu_co8466433.1_g000001 Rmu_sc0000249.1_g000001 Rmu_sc0000405.1_g000016 Rmu_sc0005197.1_g000009 Rmu_sc0005197.1_g000015 Rmu_sc0036323.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010480 Rroxscaffold_1G00010530 Rroxscaffold_1G00010550 Rroxscaffold_1G00010560 Rroxscaffold_2G00076650 Rroxscaffold_5G00357250
rosa_rugosa	Rorug02G0592200 Rorug02G0592300 Rorug05G0407500 Rorug05G0407800
rosa_samantha	Rh2AG670700 Rh2BG682200 Rh2CG645000 Rh2DG695800 Rh5AG463200 Rh5AG463300 Rh5AG463400 Rh5BG481200 Rh5CG505400 Rh5CG505500 Rh5DG493300 Rh5DG493600 Rh5DG493700
rosa_wichuraiana	Rw2G055020 Rw5G043110 Rw5G043120 Rw5G043130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	645
AccB7I	CCANNNNNTGG	1 cut(s)	434
AccII	CGCG	1 cut(s)	380
AciI	CCGC	1 cut(s)	404
AcoI	YGGCCR	1 cut(s)	425
AcsI	RAATTY	1 cut(s)	199
AcuI	CTGAAG	1 cut(s)	538
AfiI	CCNNNNNNNGG	4 cut(s)	257, 360, 361, 434
AflIII	ACRYGT	1 cut(s)	87
AgsI	TTSAA	3 cut(s)	190, 274, 634
AjnI	CCWGG	3 cut(s)	310, 433, 636
AluBI	AGCT	8 cut(s)	277, 343, 545, 558, 587, 600, 611, 657
AluI	AGCT	8 cut(s)	277, 343, 545, 558, 587, 600, 611, 657
Alw26I	GTCTC	3 cut(s)	259, 297, 369
AlwNI	CAGNNNCTG	2 cut(s)	590, 657
AoxI	GGCC	2 cut(s)	425, 437
ApeKI	GCWGC	4 cut(s)	392, 545, 584, 600
ApoI	RAATTY	1 cut(s)	199
AseI	ATTAAT	1 cut(s)	485
AspLEI	GCGC	1 cut(s)	124
AspS9I	GGNCC	2 cut(s)	62, 437
AsuHPI	GGTGA	1 cut(s)	397
AvaII	GGWCC	1 cut(s)	62
BarI	GAAGNNNNNNTAC	2 cut(s)	600, 632
BbvI	GCAGC	4 cut(s)	404, 532, 587, 596
BccI	CCATC	3 cut(s)	14, 156, 232
BciT130I	CCWGG	3 cut(s)	312, 435, 638
BcoDI	GTCTC	3 cut(s)	259, 297, 369
BfmI	CTRYAG	3 cut(s)	66, 490, 505
BisI	GCNGC	4 cut(s)	393, 546, 585, 601
BlsI	GCNGC	4 cut(s)	394, 547, 586, 602
Bme1390I	CCNGG	3 cut(s)	312, 435, 638
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	2 cut(s)	62, 437
BmiI	GGNNCC	2 cut(s)	63, 402
BmrFI	CCNGG	3 cut(s)	312, 435, 638
BmrI	ACTGGG	1 cut(s)	104
BmsI	GCATC	2 cut(s)	62, 153
BmuI	ACTGGG	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	434
Bsc4I	CCNNNNNNNGG	4 cut(s)	257, 360, 361, 434
Bse1I	ACTGG	1 cut(s)	99
BseBI	CCWGG	3 cut(s)	312, 435, 638
BseDI	CCNNGG	1 cut(s)	434
BseGI	GGATG	2 cut(s)	144, 166
BseLI	CCNNNNNNNGG	4 cut(s)	257, 360, 361, 434
BseMII	CTCAG	2 cut(s)	270, 603
BseNI	ACTGG	1 cut(s)	99
BseRI	GAGGAG	1 cut(s)	383
BseXI	GCAGC	4 cut(s)	404, 532, 587, 596
BseYI	CCCAGC	1 cut(s)	44
BsgI	GTGCAG	1 cut(s)	411
Bsh1236I	CGCG	1 cut(s)	380
BshFI	GGCC	2 cut(s)	427, 439
BsiSI	CCGG	1 cut(s)	424
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	4 cut(s)	257, 360, 361, 434
BsmAI	GTCTC	3 cut(s)	259, 297, 369
BsmBI	CGTCTC	1 cut(s)	369
BsmFI	GGGAC	1 cut(s)	377
BsmI	GAATGC	2 cut(s)	324, 548
BsnI	GGCC	2 cut(s)	427, 439
Bsp143I	GATC	1 cut(s)	348
BspACI	CCGC	1 cut(s)	404
BspANI	GGCC	2 cut(s)	427, 439
BspCNI	CTCAG	2 cut(s)	269, 604
BspFNI	CGCG	1 cut(s)	380
BspLI	GGNNCC	2 cut(s)	63, 402
BspQI	GCTCTTC	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	434
BssMI	GATC	1 cut(s)	348
Bst2UI	CCWGG	3 cut(s)	312, 435, 638
Bst4CI	ACNGT	2 cut(s)	385, 509
Bst6I	CTCTTC	1 cut(s)	336
BstDEI	CTNAG	3 cut(s)	256, 570, 612
BstENI	CCTNNNNNAGG	1 cut(s)	255
BstF5I	GGATG	2 cut(s)	144, 166
BstFNI	CGCG	1 cut(s)	380
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	1 cut(s)	351
BstMAI	GTCTC	3 cut(s)	259, 297, 369
BstMBI	GATC	1 cut(s)	348
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 398, 445, 584
BstNI	CCWGG	3 cut(s)	312, 435, 638
BstNSI	RCATGY	1 cut(s)	91
BstSCI	CCNGG	3 cut(s)	310, 433, 636
BstSFI	CTRYAG	3 cut(s)	66, 490, 505
BstUI	CGCG	1 cut(s)	380
BstV1I	GCAGC	4 cut(s)	404, 532, 587, 596
BsuRI	GGCC	2 cut(s)	427, 439
BtsCI	GGATG	2 cut(s)	144, 166
CaiI	CAGNNNCTG	2 cut(s)	590, 657
CfoI	GCGC	1 cut(s)	124
Cfr13I	GGNCC	2 cut(s)	62, 437
CseI	GACGC	2 cut(s)	384, 386
CviAII	CATG	2 cut(s)	88, 356
DdeI	CTNAG	3 cut(s)	256, 570, 612
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
EaeI	YGGCCR	1 cut(s)	425
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
EciI	GGCGGA	1 cut(s)	393
Eco32I	GATATC	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	538
EcoNI	CCTNNNNNAGG	1 cut(s)	255
EcoO109I	RGGNCCY	1 cut(s)	62
EcoRII	CCWGG	3 cut(s)	310, 433, 636
EcoRV	GATATC	1 cut(s)	106
Esp3I	CGTCTC	1 cut(s)	369
FaeI	CATG	2 cut(s)	91, 359
FaiI	YATR	6 cut(s)	75, 89, 182, 297, 357, 645
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	2 cut(s)	87, 355
Fnu4HI	GCNGC	4 cut(s)	393, 546, 585, 601
FokI	GGATG	2 cut(s)	131, 153
Fsp4HI	GCNGC	4 cut(s)	393, 546, 585, 601
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	4 cut(s)	393, 546, 585, 601
GsaI	CCCAGC	1 cut(s)	48
HaeIII	GGCC	2 cut(s)	427, 439
HapII	CCGG	1 cut(s)	424
HgaI	GACGC	2 cut(s)	384, 386
HhaI	GCGC	1 cut(s)	124
Hin1II	CATG	2 cut(s)	91, 359
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HindIII	AAGCTT	1 cut(s)	341
HpaII	CCGG	1 cut(s)	424
HphI	GGTGA	1 cut(s)	397
Hpy188I	TCNGA	5 cut(s)	58, 223, 233, 348, 592
Hpy188III	TCNNGA	2 cut(s)	258, 539
Hpy99I	CGWCG	2 cut(s)	385, 400
HpyAV	CCTTC	1 cut(s)	447
HpyCH4III	ACNGT	2 cut(s)	385, 509
HpyCH4V	TGCA	5 cut(s)	53, 359, 392, 417, 548
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 398, 445, 584
HpyF3I	CTNAG	3 cut(s)	256, 570, 612
Hsp92II	CATG	2 cut(s)	91, 359
HspAI	GCGC	1 cut(s)	122
Kzo9I	GATC	1 cut(s)	348
LguI	GCTCTTC	1 cut(s)	336
LmnI	GCTCC	2 cut(s)	406, 654
Lsp1109I	GCAGC	4 cut(s)	404, 532, 587, 596
LweI	GCATC	2 cut(s)	62, 153
MaeIII	GTNAC	3 cut(s)	90, 210, 615
MalI	GATC	1 cut(s)	350
MboI	GATC	1 cut(s)	348
MboII	GAAGA	3 cut(s)	37, 323, 544
MluCI	AATT	5 cut(s)	185, 199, 226, 459, 628
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	8 cut(s)	27, 52, 149, 319, 361, 364, 441, 469
MseI	TTAA	1 cut(s)	485
MspI	CCGG	1 cut(s)	424
MspR9I	CCNGG	3 cut(s)	312, 435, 638
Mva1269I	GAATGC	2 cut(s)	324, 548
MvaI	CCWGG	3 cut(s)	312, 435, 638
MvnI	CGCG	1 cut(s)	380
MwoI	GCNNNNNNNGC	4 cut(s)	50, 398, 445, 584
NdeII	GATC	1 cut(s)	348
NlaIII	CATG	2 cut(s)	91, 359
NlaIV	GGNNCC	2 cut(s)	63, 402
NmeAIII	GCCGAG	1 cut(s)	432
NspI	RCATGY	1 cut(s)	91
PciI	ACATGT	1 cut(s)	87
PciSI	GCTCTTC	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	1 cut(s)	404
PctI	GAATGC	2 cut(s)	324, 548
PflMI	CCANNNNNTGG	1 cut(s)	434
PkrI	GCNGC	4 cut(s)	394, 547, 586, 602
PpuMI	RGGWCCY	1 cut(s)	62
PscI	ACATGT	1 cut(s)	87
PshBI	ATTAAT	1 cut(s)	485
PsiI	TTATAA	1 cut(s)	645
Psp5II	RGGWCCY	1 cut(s)	62
Psp6I	CCWGG	3 cut(s)	310, 433, 636
PspFI	CCCAGC	1 cut(s)	44
PspGI	CCWGG	3 cut(s)	310, 433, 636
PspN4I	GGNNCC	2 cut(s)	63, 402
PspPI	GGNCC	2 cut(s)	62, 437
PspPPI	RGGWCCY	1 cut(s)	62
PsrI	GAACNNNNNNTAC	2 cut(s)	488, 520
PstNI	CAGNNNCTG	2 cut(s)	590, 657
SapI	GCTCTTC	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	485
SatI	GCNGC	4 cut(s)	393, 546, 585, 601
Sau3AI	GATC	1 cut(s)	348
Sau96I	GGNCC	2 cut(s)	62, 437
ScrFI	CCNGG	3 cut(s)	312, 435, 638
SfaNI	GCATC	2 cut(s)	62, 153
SfcI	CTRYAG	3 cut(s)	66, 490, 505
SinI	GGWCC	1 cut(s)	62
Sse9I	AATT	5 cut(s)	185, 199, 226, 459, 628
SsiI	CCGC	1 cut(s)	404
StyD4I	CCNGG	3 cut(s)	310, 433, 636
TaaI	ACNGT	2 cut(s)	385, 509
TasI	AATT	5 cut(s)	185, 199, 226, 459, 628
Tru1I	TTAA	1 cut(s)	485
Tru9I	TTAA	1 cut(s)	485
TseI	GCWGC	4 cut(s)	392, 545, 584, 600
TspDTI	ATGAA	2 cut(s)	197, 471
Van91I	CCANNNNNTGG	1 cut(s)	434
VpaK11BI	GGWCC	1 cut(s)	62
VspI	ATTAAT	1 cut(s)	485
XagI	CCTNNNNNAGG	1 cut(s)	255
XapI	RAATTY	1 cut(s)	199
XceI	RCATGY	1 cut(s)	91
XcmI	CCANNNNNNNNNTGG	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.