Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000740

Physical Location & Seq

Genomic Coordinates Reverse (-)

77472791 .. 77474244

Gene Structure 1454 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG493300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAGCCCAGTGATGCTCTCAACTTTAGCAGATGGGAAGATAGTGAGGGGCTTTGCTGGGATTCCTTCAGAGGGTCCTGTAGTGTATGTCGGTTATCACATGTTACTGGGATTTGATACCTTTCCACTGGTAAAAGGGTTGTTGGAACTAAAAGACATCCATCTGCGAGGGATAGCACATCCAATGATGTTTATGAAATTGAAACAAGAAAATTTAATTGAGTTGCCATTTTCAGATGATTTCAGACTTATGGGTGCTGTTCCTGTCTCGGGAAAATGCTTTTTCAAGCTACTCTCTACAAAGTCTCATATCCTACTCTATCCTGGTGGAGTGCGTGAGGCTCTTCACAGGAAGGGGGAAGCATATAAGCTATTTTGGCCTGAACAGTCAGAGTTTGTGAGGATGGCAGCTACATTTGGAGCCAAAATCATACCCTTTGGTGCTGTTGGAGAAGATGACTGTGGTGACGTATTATTTGATTATGAAGATCAGATGAAAGTTCCTTTCCTCAAGAAATATATAGAAGAAATATCGGATGAAGATGGAAAACTGAGGGCTACCATTGATGGGGAAGTAGGAAACCAAGCTGTACACTACCCAGGAATTCTACCGAAATTTCCTGGCCGGTTTTATTATTGTTTTGGGAAACCAATTGAAACAGAAGGGAGGAACCAGGAATTACGAGACAGGGAGAAGGCTCAGGAATTGTATTTACAAGTGAAATCAGAGGTTGAGAACTGCATTGCTTATTTGCAGAAAAAAAGAGAGAGTGATCCTTACAGAAGCCTTGCATCTCGGCTACTCTTCCAGGCAAGACATGGCTTTACAGCTCAAGTTCCTGCATTTGACATCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010287 GO:0016101 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019432 GO:0033306 GO:0034308 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576 GO:1901615 GO:1903173

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 DAGAT Hydrolase_4

Protein Analysis

285

Amino Acids

32.3

Weight (kDa)

6.2

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAGAT	PF03982	77 - 154	5.3e-07	Diacylglycerol acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02030 AT3G02030 AT3G26820 AT3G26820 AT3G26840 AT5G41120 AT5G41120 AT5G41120 AT5G41130 AT5G41130 AT5G41130
fragaria_vesca	FvH4_3g35400 FvH4_3g39220 FvH4_3g39220 FvH4_3g39270 FvH4_3g39280 FvH4_3g39280 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060 FvH4_6g54060
malus_domestica	MD09G1005800.v1.1 MD17G1009900.v1.1
prunus_persica	Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1 Prupe.3G311200_v2.0.a1
pyrus_communis	pycom111g00420
rosa_chinensis	RchiOBHm_Chr2g0176241 RchiOBHm_Chr5g0070671 RchiOBHm_Chr5g0070681 RchiOBHm_Chr5g0070691
rosa_laevigata	RLG00000022394 RLG00000036149 RLG00000036150 RLG00000036152
rosa_multiflora	Rmu_co8466433.1_g000001 Rmu_sc0000249.1_g000001 Rmu_sc0000405.1_g000016 Rmu_sc0005197.1_g000009 Rmu_sc0005197.1_g000015 Rmu_sc0036323.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010480 Rroxscaffold_1G00010530 Rroxscaffold_1G00010550 Rroxscaffold_1G00010560 Rroxscaffold_2G00076650 Rroxscaffold_5G00357250
rosa_rugosa	Rorug02G0592200 Rorug02G0592300 Rorug05G0407500 Rorug05G0407800
rosa_samantha	Rh2AG670700 Rh2BG682200 Rh2CG645000 Rh2DG695800 Rh5AG463200 Rh5AG463300 Rh5AG463400 Rh5BG481200 Rh5CG505400 Rh5CG505500 Rh5DG493300 Rh5DG493600 Rh5DG493700
rosa_wichuraiana	Rw2G055020 Rw5G043110 Rw5G043120 Rw5G043130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	767
AcoI	YGGCCR	1 cut(s)	622
AcsI	RAATTY	3 cut(s)	211, 603, 614
AcuI	CTGAAG	1 cut(s)	51
AfaI	GTAC	1 cut(s)	591
AfiI	CCNNNNNNNGG	3 cut(s)	71, 269, 567
AflIII	ACRYGT	1 cut(s)	99
AgsI	TTSAA	3 cut(s)	202, 286, 656
AjnI	CCWGG	5 cut(s)	322, 598, 619, 672, 807
AluBI	AGCT	5 cut(s)	289, 370, 410, 587, 830
AluI	AGCT	5 cut(s)	289, 370, 410, 587, 830
Alw26I	GTCTC	3 cut(s)	271, 309, 678
AlwI	GGATC	1 cut(s)	767
Ama87I	CYCGRG	1 cut(s)	268
AoxI	GGCC	2 cut(s)	377, 622
ApeKI	GCWGC	1 cut(s)	407
ApoI	RAATTY	3 cut(s)	211, 603, 614
ArsI	GACNNNNNNTTYG	2 cut(s)	458, 490
AspS9I	GGNCC	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	476
AvaI	CYCGRG	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	419
BccI	CCATC	5 cut(s)	26, 168, 397, 536, 560
BciT130I	CCWGG	5 cut(s)	324, 600, 621, 674, 809
BcoDI	GTCTC	3 cut(s)	271, 309, 678
BfmI	CTRYAG	1 cut(s)	78
BisI	GCNGC	1 cut(s)	408
BlsI	GCNGC	1 cut(s)	409
Bme1390I	CCNGG	5 cut(s)	324, 600, 621, 674, 809
Bme18I	GGWCC	1 cut(s)	74
BmeT110I	CYCGRG	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	74
BmiI	GGNNCC	3 cut(s)	75, 421, 671
BmrFI	CCNGG	5 cut(s)	324, 600, 621, 674, 809
BmrI	ACTGGG	1 cut(s)	116
BmsI	GCATC	2 cut(s)	3, 800
BmuI	ACTGGG	1 cut(s)	116
Bpu10I	CCTNAGC	1 cut(s)	699
BpuEI	CTTGAG	2 cut(s)	494, 816
Bsa29I	ATCGAT	1 cut(s)	852
BsaJI	CCNNGG	1 cut(s)	598
Bsc4I	CCNNNNNNNGG	3 cut(s)	71, 269, 567
Bse118I	RCCGGY	1 cut(s)	624
Bse1I	ACTGG	3 cut(s)	8, 111, 132
Bse3DI	GCAATG	1 cut(s)	741
BseBI	CCWGG	5 cut(s)	324, 600, 621, 674, 809
BseCI	ATCGAT	1 cut(s)	852
BseDI	CCNNGG	1 cut(s)	598
BseGI	GGATG	4 cut(s)	156, 178, 408, 541
BseLI	CCNNNNNNNGG	3 cut(s)	71, 269, 567
BseMI	GCAATG	1 cut(s)	741
BseMII	CTCAG	2 cut(s)	542, 713
BseNI	ACTGG	3 cut(s)	8, 111, 132
BseXI	GCAGC	1 cut(s)	419
BseYI	CCCAGC	1 cut(s)	56
BshFI	GGCC	2 cut(s)	379, 624
BshVI	ATCGAT	1 cut(s)	852
BsiHKCI	CYCGRG	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	625
BslI	CCNNNNNNNGG	3 cut(s)	71, 269, 567
BsmAI	GTCTC	3 cut(s)	271, 309, 678
BsnI	GGCC	2 cut(s)	379, 624
BsoBI	CYCGRG	1 cut(s)	268
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp1407I	TGTACA	1 cut(s)	589
Bsp143I	GATC	2 cut(s)	487, 772
BspANI	GGCC	2 cut(s)	379, 624
BspCNI	CTCAG	2 cut(s)	543, 712
BspDI	ATCGAT	1 cut(s)	852
BspLI	GGNNCC	3 cut(s)	75, 421, 671
BspPI	GGATC	1 cut(s)	767
BspQI	GCTCTTC	1 cut(s)	348
BsrDI	GCAATG	1 cut(s)	741
BsrFI	RCCGGY	1 cut(s)	624
BsrGI	TGTACA	1 cut(s)	589
BsrI	ACTGG	3 cut(s)	8, 111, 132
BssAI	RCCGGY	1 cut(s)	624
BssECI	CCNNGG	1 cut(s)	598
BssMI	GATC	2 cut(s)	487, 772
Bst2UI	CCWGG	5 cut(s)	324, 600, 621, 674, 809
Bst4CI	ACNGT	2 cut(s)	387, 461
Bst6I	CTCTTC	2 cut(s)	348, 809
BstAUI	TGTACA	1 cut(s)	589
BstDEI	CTNAG	2 cut(s)	551, 699
BstF5I	GGATG	4 cut(s)	156, 178, 408, 541
BstKTI	GATC	2 cut(s)	490, 775
BstMAI	GTCTC	3 cut(s)	271, 309, 678
BstMBI	GATC	2 cut(s)	487, 772
BstMWI	GCNNNNNNNGC	1 cut(s)	376
BstNI	CCWGG	5 cut(s)	324, 600, 621, 674, 809
BstNSI	RCATGY	1 cut(s)	103
BstSCI	CCNGG	5 cut(s)	322, 598, 619, 672, 807
BstSFI	CTRYAG	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	419
Bsu15I	ATCGAT	1 cut(s)	852
BsuRI	GGCC	2 cut(s)	379, 624
BsuTUI	ATCGAT	1 cut(s)	852
BtsCI	GGATG	4 cut(s)	156, 178, 408, 541
BtsIMutI	CAGTG	2 cut(s)	15, 125
Cfr10I	RCCGGY	1 cut(s)	624
Cfr13I	GGNCC	1 cut(s)	74
ClaI	ATCGAT	1 cut(s)	852
Csp6I	GTAC	1 cut(s)	590
CviAII	CATG	2 cut(s)	100, 818
CviQI	GTAC	1 cut(s)	590
DdeI	CTNAG	2 cut(s)	551, 699
DpnI	GATC	2 cut(s)	489, 774
DpnII	GATC	2 cut(s)	487, 772
EaeI	YGGCCR	1 cut(s)	622
Eam1104I	CTCTTC	2 cut(s)	348, 809
EarI	CTCTTC	2 cut(s)	348, 809
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	74
Eco57I	CTGAAG	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	268
EcoO109I	RGGNCCY	1 cut(s)	74
EcoRI	GAATTC	1 cut(s)	603
EcoRII	CCWGG	5 cut(s)	322, 598, 619, 672, 807
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	2 cut(s)	103, 821
FatI	CATG	2 cut(s)	99, 817
Fnu4HI	GCNGC	1 cut(s)	408
FokI	GGATG	4 cut(s)	143, 165, 415, 548
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	408
GluI	GCNGC	1 cut(s)	408
GsaI	CCCAGC	1 cut(s)	60
HaeIII	GGCC	2 cut(s)	379, 624
HapII	CCGG	1 cut(s)	625
Hin1II	CATG	2 cut(s)	103, 821
HinfI	GANTC	1 cut(s)	61
HpaII	CCGG	1 cut(s)	625
HphI	GGTGA	1 cut(s)	476
Hpy166II	GTNNAC	1 cut(s)	592
Hpy188I	TCNGA	7 cut(s)	70, 235, 245, 391, 492, 535, 727
Hpy188III	TCNNGA	3 cut(s)	270, 511, 701
Hpy8I	GTNNAC	1 cut(s)	592
HpyAV	CCTTC	4 cut(s)	75, 346, 656, 688
HpyCH4III	ACNGT	2 cut(s)	387, 461
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	4 cut(s)	741, 754, 791, 842
HpyF10VI	GCNNNNNNNGC	1 cut(s)	376
HpyF3I	CTNAG	2 cut(s)	551, 699
HpySE526I	ACGT	1 cut(s)	468
Hsp92II	CATG	2 cut(s)	103, 821
Kzo9I	GATC	2 cut(s)	487, 772
LguI	GCTCTTC	1 cut(s)	348
LmnI	GCTCC	1 cut(s)	419
Lsp1109I	GCAGC	1 cut(s)	419
LweI	GCATC	2 cut(s)	3, 800
MaeII	ACGT	1 cut(s)	468
MaeIII	GTNAC	2 cut(s)	102, 464
MalI	GATC	2 cut(s)	489, 774
MboI	GATC	2 cut(s)	487, 772
MboII	GAAGA	7 cut(s)	49, 335, 464, 497, 536, 551, 796
MfeI	CAATTG	1 cut(s)	651
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	8 cut(s)	197, 211, 216, 603, 614, 651, 677, 704
MmeI	TCCRAC	2 cut(s)	123, 427
MnlI	CCTC	9 cut(s)	39, 64, 161, 331, 393, 518, 546, 660, 721
MseI	TTAA	2 cut(s)	215, 856
MspI	CCGG	1 cut(s)	625
MspR9I	CCNGG	5 cut(s)	324, 600, 621, 674, 809
MunI	CAATTG	1 cut(s)	651
MvaI	CCWGG	5 cut(s)	324, 600, 621, 674, 809
MwoI	GCNNNNNNNGC	1 cut(s)	376
NdeII	GATC	2 cut(s)	487, 772
NlaIII	CATG	2 cut(s)	103, 821
NlaIV	GGNNCC	3 cut(s)	75, 421, 671
NmeAIII	GCCGAG	1 cut(s)	775
NmuCI	GTSAC	1 cut(s)	464
NspI	RCATGY	1 cut(s)	103
PciI	ACATGT	1 cut(s)	99
PciSI	GCTCTTC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	61
PkrI	GCNGC	1 cut(s)	409
PpuMI	RGGWCCY	1 cut(s)	74
PscI	ACATGT	1 cut(s)	99
Psp5II	RGGWCCY	1 cut(s)	74
Psp6I	CCWGG	5 cut(s)	322, 598, 619, 672, 807
PspFI	CCCAGC	1 cut(s)	56
PspGI	CCWGG	5 cut(s)	322, 598, 619, 672, 807
PspN4I	GGNNCC	3 cut(s)	75, 421, 671
PspPI	GGNCC	1 cut(s)	74
PspPPI	RGGWCCY	1 cut(s)	74
RsaI	GTAC	1 cut(s)	591
RsaNI	GTAC	1 cut(s)	590
SapI	GCTCTTC	1 cut(s)	348
SaqAI	TTAA	2 cut(s)	215, 856
SatI	GCNGC	1 cut(s)	408
Sau3AI	GATC	2 cut(s)	487, 772
Sau96I	GGNCC	1 cut(s)	74
ScrFI	CCNGG	5 cut(s)	324, 600, 621, 674, 809
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	8 cut(s)	122, 291, 372, 412, 471, 589, 732, 832
SfaNI	GCATC	2 cut(s)	3, 800
SfcI	CTRYAG	1 cut(s)	78
SinI	GGWCC	1 cut(s)	74
SmlI	CTYRAG	2 cut(s)	509, 831
SmoI	CTYRAG	2 cut(s)	509, 831
Sse9I	AATT	8 cut(s)	197, 211, 216, 603, 614, 651, 677, 704
StyD4I	CCNGG	5 cut(s)	322, 598, 619, 672, 807
TaaI	ACNGT	2 cut(s)	387, 461
TaiI	ACGT	1 cut(s)	471
TaqI	TCGA	1 cut(s)	852
TasI	AATT	8 cut(s)	197, 211, 216, 603, 614, 651, 677, 704
TatI	WGTACW	1 cut(s)	589
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	2 cut(s)	215, 856
Tru9I	TTAA	2 cut(s)	215, 856
TscAI	CASTG	2 cut(s)	15, 132
TseFI	GTSAC	1 cut(s)	464
TseI	GCWGC	1 cut(s)	407
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	4 cut(s)	209, 498, 509, 552
TspRI	CASTG	2 cut(s)	15, 132
VpaK11BI	GGWCC	1 cut(s)	74
XapI	RAATTY	3 cut(s)	211, 603, 614
XceI	RCATGY	1 cut(s)	103
XcmI	CCANNNNNNNNNTGG	1 cut(s)	815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.