FvH4_3g43340

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001255
Physical Location & Seq
Reverse (-)
36162973 .. 36166041
3069 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g43340.t5

Sequence Viewer

Length: 1284 bp
ATGGACACCAGAGCTGTTGTTCCTCCACATCCCAGAGGGAATGGTAAAGTCCATGGAGAAGCACCAAGAAGGAACCAGCGAGTGGCTCTTGAAGACAGGACCAACTTAGGGGCAGGTCAGGTTGAAATTGAAGGGAAGCCCGCGGTTCAGATTACTCGCCGCATCACAAGGAGCTTTCATGCCCAGCTGTTGGCAAATGCACAGAAGAACAATGGGAACCCTGTACTAGTTCCAGGAGTTGTAGACAAGGAAGCTAAGAATAGAAATGGTTCCGCTGGAAAGAAGGTTACCAAGAAAGCAGCTGATGAAGATGTAGTTGTGATTAGTTCTGATGAAGAAAATGAGAAGCCAGTCAATAGAGGCAAGCCGGTACAAGGTCCAAGGAAAGAAGTGAAGACTCTCACTTCGATACTAACAGCTCGAAGCAAGGCTATGGCTTGTGGAGACGCTAACAAACCAAAAGAGCAGATTGTCGATTTTGATAAAGCTGATGTCAATGATGAACTAGCAGGTGTTGAATATGTAGATGAATTGTACAAGTTTTATAAGCTTGAAGAGGATGAATGCCGAGTTGGAGATTACATGGACAAACAGCCAGATATTAATTCAAAGATGAGGGCTATCCTTGTAGACTGGTTGATAGATGTTCACAGGAAATTTGAGCTAATGCCTGAAACATTCTACCTCACCGTGAATATAACTGACCGATTCCTTTCAAGGAGGATGGTAACTAGGAGGGAACTTCAGCTAGTTGGCATCAGTTCCATGGTGATAGCATCAAAGTATGAGGAAGTTTGGGCTCCGCAGGTCAATGATTTTGTTTGCTTGTCAGACTATGCATATAGTGACAATCAAATTCGTGCAATGGAGAAAGCAATCTTGCAGAAGTTGGAGTGGTATTTGACAGTTCCAACACCTTATGTCTTTCTTGCTAGATACATCAAAGCTTCCATTTCACCTGATGATGAGATGAAGAATATGGTTTTCTTTCTAGCCGAACTTGGAGTCTTGGATTATCAAACAACCATTAGGCACTCCCCATCCATGATAGCTGCTGCAGCAGTCTATGCTGCCCGTTGCACCCTAAACAAGATGCCTTTCTGGACTGAAACTCTGAAGCACCATACTGGTTACTGTGAAGAAGATCTAAGGGAATGTGCCAAGGTTTTGGTTGGCTTTCACTCCAAGGCTGGAGAAAGTGATGTTATTAAAGCTGTGTACAAGAAATACACAAAACCTGAATATGGCGCTGTTGCTCGTCGAACTCCAGCAAAAATTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

428

Amino Acids

48.25

Weight (kDa)

8.6

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 189 - 312 3e-47 Cyclin, N-terminal domain
Cyclin_C PF02984 314 - 432 9.8e-36 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 546
AarI CACCTGC 1 cut(s) 500
Acc36I ACCTGC 3 cut(s) 104, 500, 796
AccB7I CCANNNNNTGG 2 cut(s) 82, 190
AccI GTMKAC 2 cut(s) 243, 630
AccII CGCG 1 cut(s) 143
AciI CCGC 5 cut(s) 141, 143, 160, 273, 803
AcsI RAATTY 3 cut(s) 656, 855, 1275
AcuI CTGAAG 2 cut(s) 728, 1136
AfaI GTAC 4 cut(s) 225, 372, 536, 1220
AfiI CCNNNNNNNGG 5 cut(s) 82, 108, 190, 374, 1244
AgsI TTSAA 7 cut(s) 92, 125, 131, 518, 554, 609, 717
AhlI ACTAGT 1 cut(s) 226
AjnI CCWGG 1 cut(s) 232
AjuI GAANNNNNNNTTGG 2 cut(s) 555, 587
Alw26I GTCTC 1 cut(s) 438
ApeKI GCWGC 5 cut(s) 299, 1052, 1055, 1058, 1070
ApoI RAATTY 3 cut(s) 656, 855, 1275
ArsI GACNNNNNNTTYG 4 cut(s) 388, 420, 990, 1022
AseI ATTAAT 1 cut(s) 603
Asp700I GAANNNNTTC 1 cut(s) 268
AspLEI GCGC 1 cut(s) 1250
AspS9I GGNCC 2 cut(s) 99, 377
AsuHPI GGTGA 3 cut(s) 679, 781, 948
AvaII GGWCC 2 cut(s) 99, 377
BanII GRGCYC 1 cut(s) 802
BbsI GAAGAC 2 cut(s) 99, 401
BbvI GCAGC 5 cut(s) 311, 1039, 1042, 1057, 1070
BccI CCATC 2 cut(s) 718, 1048
BciT130I CCWGG 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 438
BcuI ACTAGT 1 cut(s) 226
BfaI CTAG 6 cut(s) 227, 506, 732, 749, 933, 992
BfmI CTRYAG 1 cut(s) 1056
BfoI RGCGCY 1 cut(s) 1251
BfuAI ACCTGC 3 cut(s) 104, 500, 796
BglII AGATCT 1 cut(s) 1144
BisI GCNGC 6 cut(s) 160, 300, 1053, 1056, 1059, 1071
BlsI GCNGC 6 cut(s) 161, 301, 1054, 1057, 1060, 1072
Bme1390I CCNGG 1 cut(s) 234
Bme18I GGWCC 2 cut(s) 99, 377
BmgT120I GGNCC 2 cut(s) 99, 377
BmiI GGNNCC 4 cut(s) 74, 218, 271, 801
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 4 cut(s) 171, 765, 785, 1083
BpiI GAAGAC 2 cut(s) 99, 401
BpmI CTGGAG 2 cut(s) 1212, 1251
BsaJI CCNNGG 6 cut(s) 52, 141, 380, 765, 1161, 1185
Bsc4I CCNNNNNNNGG 5 cut(s) 82, 108, 190, 374, 1244
Bse118I RCCGGY 1 cut(s) 367
Bse1I ACTGG 3 cut(s) 350, 638, 1132
Bse3DI GCAATG 1 cut(s) 870
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 6 cut(s) 52, 141, 380, 765, 1161, 1185
BseGI GGATG 4 cut(s) 28, 565, 729, 1040
BseLI CCNNNNNNNGG 5 cut(s) 82, 108, 190, 374, 1244
BseMI GCAATG 1 cut(s) 870
BseNI ACTGG 3 cut(s) 350, 638, 1132
BseXI GCAGC 5 cut(s) 311, 1039, 1042, 1057, 1070
BseYI CCCAGC 1 cut(s) 183
Bsh1236I CGCG 1 cut(s) 143
BsiSI CCGG 1 cut(s) 368
BslI CCNNNNNNNGG 5 cut(s) 82, 108, 190, 374, 1244
BsmAI GTCTC 1 cut(s) 438
BsmBI CGTCTC 1 cut(s) 438
BsmI GAATGC 1 cut(s) 569
Bsp1286I GDGCHC 1 cut(s) 802
Bsp1407I TGTACA 2 cut(s) 534, 1218
Bsp143I GATC 1 cut(s) 1144
Bsp19I CCATGG 2 cut(s) 52, 765
BspACI CCGC 5 cut(s) 141, 143, 160, 273, 803
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 4 cut(s) 74, 218, 271, 801
BspMAI CTGCAG 1 cut(s) 1060
BspMI ACCTGC 3 cut(s) 104, 500, 796
BsrDI GCAATG 1 cut(s) 870
BsrFI RCCGGY 1 cut(s) 367
BsrGI TGTACA 2 cut(s) 534, 1218
BsrI ACTGG 3 cut(s) 350, 638, 1132
BssAI RCCGGY 1 cut(s) 367
BssECI CCNNGG 6 cut(s) 52, 141, 380, 765, 1161, 1185
BssMI GATC 1 cut(s) 1144
BssT1I CCWWGG 5 cut(s) 52, 380, 765, 1161, 1185
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 3 cut(s) 691, 907, 1136
Bst6I CTCTTC 1 cut(s) 549
BstAPI GCANNNNNTGC 1 cut(s) 1067
BstAUI TGTACA 2 cut(s) 534, 1218
BstC8I GCNNGC 2 cut(s) 141, 365
BstDEI CTNAG 3 cut(s) 106, 255, 1148
BstDSI CCRYGG 3 cut(s) 52, 141, 765
BstEII GGTNACC 1 cut(s) 286
BstF5I GGATG 4 cut(s) 28, 565, 729, 1040
BstFNI CGCG 1 cut(s) 143
BstH2I RGCGCY 1 cut(s) 1251
BstHHI GCGC 1 cut(s) 1250
BstKTI GATC 1 cut(s) 1147
BstMAI GTCTC 1 cut(s) 438
BstMBI GATC 1 cut(s) 1144
BstMWI GCNNNNNNNGC 2 cut(s) 1058, 1067
BstNI CCWGG 1 cut(s) 234
BstPI GGTNACC 1 cut(s) 286
BstSCI CCNGG 1 cut(s) 232
BstSFI CTRYAG 1 cut(s) 1056
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 5 cut(s) 311, 1039, 1042, 1057, 1070
BstV2I GAAGAC 2 cut(s) 99, 401
BstX2I RGATCY 1 cut(s) 1144
BstXI CCANNNNNNTGG 1 cut(s) 1168
BstYI RGATCY 1 cut(s) 1144
BtgI CCRYGG 3 cut(s) 52, 141, 765
BtsCI GGATG 4 cut(s) 28, 565, 729, 1040
BveI ACCTGC 3 cut(s) 104, 500, 796
Cac8I GCNNGC 2 cut(s) 141, 365
CfoI GCGC 1 cut(s) 1250
Cfr10I RCCGGY 1 cut(s) 367
Cfr13I GGNCC 2 cut(s) 99, 377
Cfr42I CCGCGG 1 cut(s) 144
CseI GACGC 1 cut(s) 455
Csp6I GTAC 4 cut(s) 224, 371, 535, 1219
CviAII CATG 5 cut(s) 53, 179, 583, 766, 1045
CviQI GTAC 4 cut(s) 224, 371, 535, 1219
DdeI CTNAG 3 cut(s) 106, 255, 1148
DpnI GATC 1 cut(s) 1146
DpnII GATC 1 cut(s) 1144
Eam1104I CTCTTC 1 cut(s) 549
EarI CTCTTC 1 cut(s) 549
Eco130I CCWWGG 5 cut(s) 52, 380, 765, 1161, 1185
Eco24I GRGCYC 1 cut(s) 802
Eco47I GGWCC 2 cut(s) 99, 377
Eco57I CTGAAG 2 cut(s) 728, 1136
Eco91I GGTNACC 1 cut(s) 286
EcoO65I GGTNACC 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 5 cut(s) 52, 380, 765, 1161, 1185
EcoT22I ATGCAT 1 cut(s) 841
EcoT38I GRGCYC 1 cut(s) 802
ErhI CCWWGG 5 cut(s) 52, 380, 765, 1161, 1185
Esp3I CGTCTC 1 cut(s) 438
FaeI CATG 5 cut(s) 56, 182, 586, 769, 1048
FatI CATG 5 cut(s) 52, 178, 582, 765, 1044
FauI CCCGC 1 cut(s) 148
FblI GTMKAC 2 cut(s) 243, 630
Fnu4HI GCNGC 6 cut(s) 160, 300, 1053, 1056, 1059, 1071
FokI GGATG 4 cut(s) 15, 572, 736, 1027
FriOI GRGCYC 1 cut(s) 802
Fsp4HI GCNGC 6 cut(s) 160, 300, 1053, 1056, 1059, 1071
FspBI CTAG 6 cut(s) 227, 506, 732, 749, 933, 992
GlaI GCGC 1 cut(s) 1249
GluI GCNGC 6 cut(s) 160, 300, 1053, 1056, 1059, 1071
GsaI CCCAGC 1 cut(s) 187
GsuI CTGGAG 2 cut(s) 1212, 1251
HaeII RGCGCY 1 cut(s) 1251
HapII CCGG 1 cut(s) 368
HgaI GACGC 1 cut(s) 455
HhaI GCGC 1 cut(s) 1250
Hin1II CATG 5 cut(s) 56, 182, 586, 769, 1048
Hin6I GCGC 1 cut(s) 1248
HinP1I GCGC 1 cut(s) 1248
HindIII AAGCTT 2 cut(s) 548, 945
HinfI GANTC 3 cut(s) 397, 708, 1005
HpaII CCGG 1 cut(s) 368
HphI GGTGA 3 cut(s) 679, 781, 948
Hpy166II GTNNAC 4 cut(s) 244, 631, 649, 1219
Hpy188I TCNGA 4 cut(s) 150, 331, 832, 1116
Hpy188III TCNNGA 2 cut(s) 89, 1102
Hpy8I GTNNAC 4 cut(s) 244, 631, 649, 1219
Hpy99I CGWCG 1 cut(s) 1263
HpyAV CCTTC 3 cut(s) 63, 125, 277
HpyCH4III ACNGT 3 cut(s) 691, 907, 1136
HpyCH4V TGCA 6 cut(s) 200, 839, 863, 883, 1058, 1080
HpyF10VI GCNNNNNNNGC 2 cut(s) 1058, 1067
HpyF3I CTNAG 3 cut(s) 106, 255, 1148
Hsp92II CATG 5 cut(s) 56, 182, 586, 769, 1048
HspAI GCGC 1 cut(s) 1248
KspI CCGCGG 1 cut(s) 144
Kzo9I GATC 1 cut(s) 1144
LmnI GCTCC 2 cut(s) 171, 805
Lsp1109I GCAGC 5 cut(s) 311, 1039, 1042, 1057, 1070
LweI GCATC 4 cut(s) 171, 765, 785, 1083
MaeI CTAG 6 cut(s) 227, 506, 732, 749, 933, 992
MaeIII GTNAC 4 cut(s) 286, 727, 845, 1130
MalI GATC 1 cut(s) 1146
MboI GATC 1 cut(s) 1144
MboII GAAGA 9 cut(s) 104, 217, 320, 347, 406, 566, 985, 1151, 1154
MflI RGATCY 1 cut(s) 1144
MhlI GDGCHC 1 cut(s) 802
MluCI AATT 6 cut(s) 126, 530, 604, 656, 855, 1275
MlyI GAGTC 2 cut(s) 391, 1014
MmeI TCCRAC 3 cut(s) 553, 870, 935
MnlI CCTC 9 cut(s) 29, 33, 353, 550, 609, 695, 714, 729, 781
Mph1103I ATGCAT 1 cut(s) 841
MroXI GAANNNNTTC 1 cut(s) 268
MseI TTAA 2 cut(s) 603, 1209
MspA1I CMGCKG 4 cut(s) 143, 187, 275, 302
MspI CCGG 1 cut(s) 368
MspR9I CCNGG 1 cut(s) 234
Mva1269I GAATGC 1 cut(s) 569
MvaI CCWGG 1 cut(s) 234
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 2 cut(s) 1058, 1067
NcoI CCATGG 2 cut(s) 52, 765
NdeII GATC 1 cut(s) 1144
NlaIII CATG 5 cut(s) 56, 182, 586, 769, 1048
NlaIV GGNNCC 4 cut(s) 74, 218, 271, 801
NmeAIII GCCGAG 1 cut(s) 593
NmuCI GTSAC 1 cut(s) 845
NsiI ATGCAT 1 cut(s) 841
PaqCI CACCTGC 1 cut(s) 500
PctI GAATGC 1 cut(s) 569
PdmI GAANNNNTTC 1 cut(s) 268
PfeI GAWTC 1 cut(s) 708
PflMI CCANNNNNTGG 2 cut(s) 82, 190
PfoI TCCNGGA 1 cut(s) 232
PkrI GCNGC 6 cut(s) 161, 301, 1054, 1057, 1060, 1072
PleI GAGTC 2 cut(s) 391, 1013
PpsI GAGTC 2 cut(s) 391, 1013
PshBI ATTAAT 1 cut(s) 603
PsiI TTATAA 1 cut(s) 546
Psp6I CCWGG 1 cut(s) 232
PspEI GGTNACC 1 cut(s) 286
PspFI CCCAGC 1 cut(s) 183
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 4 cut(s) 74, 218, 271, 801
PspPI GGNCC 2 cut(s) 99, 377
PstI CTGCAG 1 cut(s) 1060
PsuI RGATCY 1 cut(s) 1144
PvuII CAGCTG 2 cut(s) 187, 302
RsaI GTAC 4 cut(s) 225, 372, 536, 1220
RsaNI GTAC 4 cut(s) 224, 371, 535, 1219
SacII CCGCGG 1 cut(s) 144
SaqAI TTAA 2 cut(s) 603, 1209
SatI GCNGC 6 cut(s) 160, 300, 1053, 1056, 1059, 1071
Sau3AI GATC 1 cut(s) 1144
Sau96I GGNCC 2 cut(s) 99, 377
SchI GAGTC 2 cut(s) 391, 1014
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 1 cut(s) 802
SfaNI GCATC 4 cut(s) 171, 765, 785, 1083
SfcI CTRYAG 1 cut(s) 1056
Sfr303I CCGCGG 1 cut(s) 144
SgrBI CCGCGG 1 cut(s) 144
SinI GGWCC 2 cut(s) 99, 377
SpeI ACTAGT 1 cut(s) 226
Sse9I AATT 6 cut(s) 126, 530, 604, 656, 855, 1275
SsiI CCGC 5 cut(s) 141, 143, 160, 273, 803
SspMI CTAG 6 cut(s) 227, 506, 732, 749, 933, 992
StyD4I CCNGG 1 cut(s) 232
StyI CCWWGG 5 cut(s) 52, 380, 765, 1161, 1185
TaaI ACNGT 3 cut(s) 691, 907, 1136
TaqI TCGA 4 cut(s) 407, 421, 474, 1261
TaqII GACCGA 1 cut(s) 720
TasI AATT 6 cut(s) 126, 530, 604, 656, 855, 1275
TatI WGTACW 3 cut(s) 223, 534, 1218
TauI GCSGC 1 cut(s) 162
TfiI GAWTC 1 cut(s) 708
Tru1I TTAA 2 cut(s) 603, 1209
Tru9I TTAA 2 cut(s) 603, 1209
TseFI GTSAC 1 cut(s) 845
TseI GCWGC 5 cut(s) 299, 1052, 1055, 1058, 1070
Tsp45I GTSAC 1 cut(s) 845
TspDTI ATGAA 7 cut(s) 167, 321, 348, 516, 543, 576, 986
Van91I CCANNNNNTGG 2 cut(s) 82, 190
VpaK11BI GGWCC 2 cut(s) 99, 377
VspI ATTAAT 1 cut(s) 603
XapI RAATTY 3 cut(s) 656, 855, 1275
XmiI GTMKAC 2 cut(s) 243, 630
XmnI GAANNNNTTC 1 cut(s) 268
XspI CTAG 6 cut(s) 227, 506, 732, 749, 933, 992
Zsp2I ATGCAT 1 cut(s) 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.