RchiOBHm_Chr5g0077551

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001255
Physical Location & Seq
Reverse (-)
83427398 .. 83430570
3173 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35212

Sequence Viewer

Length: 1269 bp
ATGGACACCCGCGCAGTTGTTCCTCCACAACCCAGAGGGAATGGTAAAGTCCACGGAGAAGCACCAAGAAGGAACCAGCGAGTAGCTCTTGAAGACAGGACCAACTTTGAGGCAGGTCAGGTCGAAATCGAAGGGAAGATTACTCGCCGCATTACAAGGAGTTTTCATGCCCAGCTGTTGGCAAATGCACAGAAGAACAATGGGAACCCAGTACTAGTGCCAGGTGTTGTAGACAAGGCAGCTAAGAATAGAAATGATGCCCCTGCAAAGAAGGTTACCAAGAAAGCAGCTGATGAAGATGTGATTGTGGTTAGTTCTGATGAAGAAAAGAAGAAGCCGGTCAATAGAGGCAAGCCGGTACAATGTTCAAGGAAGGAAGTCAAGACTCTCACTTCCATTCTAACAGCTCGAAGCAAGGCTATGGCTTGTGGAGACACTAACAAACTAAAAGAGCAGATTGTGGATTTTGACGCAGCTGATGTCAATGATGAACTAGCAGTTGTTGAATATGTCGATGAATTGTACAAGTTCTACAAACTTGAAGAGGATGACTGCCGAGTTGGAGATTACATGGATACACAGCCAGATATCAATTCAAAGATGAGGTCTATCCTCATAGACTGGTTGATAGATGTCCACAGGAAATTTGAACTGATGCCTGAAACATTCTACCTTACTGTGAATATAATTGACCGATTCCTTTCAAGGACGATGGTAACTAGGAGAGAACTTCAGCTAGTTGGCATCAGTTCCATGGTGATAGCATCAAAGTATGAGGAAGTTTGGGCTCCACAGGTCAATGATTTTGTGTGCTTATCAGACTATGCATATACGGGCAATCAAATTCGTGTAATGGAGAAAGCAATCCTGCAGAAGCTGGAGTGGTATTTGACAGTTCCAACACCTTACGTCTTTCTTGCTAGATACATCAAAGCTTCCATTTCACCTGATGATGAGATGAAGAATATGGTTTATTTTCTAGCCGAACTTGGAGTCTTGGATTATCAAACAACTATTCGGCACTCCCCATCCATGATAGCTGCTGCAGCTGTCTATGCTGCCCATTGTACTCTCAACAAGATGCCTTTCTGGACTGAAACTTTGAAGCACCATACTGGTTACTCTGAAGAACAGCTAAGGGAATGTGCCAAGGTTTTGGTTGGCTTTCACTCGAAGGCTGGAGAAAGTGATCTTAAAGCTCTTTTCAAGAAATACACAAAACCTGAATACAGTGCTGTTGCTCGTCGCACTCCAGCTAAAATTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

422

Amino Acids

47.91

Weight (kDa)

8.6

Isoelectric Point (pI)

40.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 175 - 298 1.1e-46 Cyclin, N-terminal domain
Cyclin_C PF02984 300 - 417 1.2e-36 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 104
AccB7I CCANNNNNTGG 1 cut(s) 178
AccI GTMKAC 1 cut(s) 231
AccII CGCG 1 cut(s) 12
AciI CCGC 2 cut(s) 10, 148
AcsI RAATTY 3 cut(s) 644, 843, 1260
AcuI CTGAAG 2 cut(s) 716, 1146
AfaI GTAC 4 cut(s) 213, 360, 524, 1069
AfiI CCNNNNNNNGG 1 cut(s) 178
AgsI TTSAA 9 cut(s) 92, 369, 506, 542, 597, 650, 705, 1105, 1207
AhlI ACTAGT 1 cut(s) 214
AjnI CCWGG 1 cut(s) 220
Alw26I GTCTC 1 cut(s) 426
AlwNI CAGNNNCTG 1 cut(s) 877
ApeKI GCWGC 7 cut(s) 239, 287, 473, 1040, 1043, 1046, 1058
ApoI RAATTY 3 cut(s) 644, 843, 1260
ArsI GACNNNNNNTTYG 6 cut(s) 590, 622, 978, 1010, 1084, 1116
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 99
AsuHPI GGTGA 2 cut(s) 769, 936
AvaII GGWCC 1 cut(s) 99
BanII GRGCYC 1 cut(s) 790
BbsI GAAGAC 1 cut(s) 99
BbvI GCAGC 7 cut(s) 251, 299, 485, 1027, 1030, 1045, 1058
BccI CCATC 2 cut(s) 706, 1036
BciT130I CCWGG 1 cut(s) 222
BciVI GTATCC 1 cut(s) 568
BcoDI GTCTC 1 cut(s) 426
BcuI ACTAGT 1 cut(s) 214
BfaI CTAG 6 cut(s) 215, 494, 720, 737, 921, 980
BfmI CTRYAG 2 cut(s) 869, 1044
BfuAI ACCTGC 1 cut(s) 104
BfuI GTATCC 1 cut(s) 568
BisI GCNGC 8 cut(s) 148, 240, 288, 474, 1041, 1044, 1047, 1059
BlsI GCNGC 8 cut(s) 149, 241, 289, 475, 1042, 1045, 1048, 1060
BmcAI AGTACT 1 cut(s) 213
Bme1390I CCNGG 1 cut(s) 222
Bme18I GGWCC 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 99
BmiI GGNNCC 3 cut(s) 74, 206, 789
BmrFI CCNGG 1 cut(s) 222
BmrI ACTGGG 1 cut(s) 203
BmsI GCATC 5 cut(s) 247, 645, 753, 773, 1071
BmuI ACTGGG 1 cut(s) 203
BpiI GAAGAC 1 cut(s) 99
BpmI CTGGAG 3 cut(s) 899, 1200, 1236
Bpu10I CCTNAGC 1 cut(s) 1136
BsaJI CCNNGG 3 cut(s) 52, 753, 1149
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse118I RCCGGY 2 cut(s) 337, 355
Bse1I ACTGG 3 cut(s) 209, 626, 1120
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 3 cut(s) 52, 753, 1149
BseGI GGATG 2 cut(s) 553, 1028
BseLI CCNNNNNNNGG 1 cut(s) 178
BseNI ACTGG 3 cut(s) 209, 626, 1120
BseXI GCAGC 7 cut(s) 251, 299, 485, 1027, 1030, 1045, 1058
BseYI CCCAGC 1 cut(s) 171
Bsh1236I CGCG 1 cut(s) 12
BsiSI CCGG 2 cut(s) 338, 356
BslI CCNNNNNNNGG 1 cut(s) 178
BsmAI GTCTC 1 cut(s) 426
Bsp1286I GDGCHC 1 cut(s) 790
Bsp1407I TGTACA 1 cut(s) 522
Bsp143I GATC 1 cut(s) 1189
Bsp19I CCATGG 1 cut(s) 753
BspACI CCGC 2 cut(s) 10, 148
BspFNI CGCG 1 cut(s) 12
BspLI GGNNCC 3 cut(s) 74, 206, 789
BspMAI CTGCAG 2 cut(s) 873, 1048
BspMI ACCTGC 1 cut(s) 104
BsrFI RCCGGY 2 cut(s) 337, 355
BsrGI TGTACA 1 cut(s) 522
BsrI ACTGG 3 cut(s) 209, 626, 1120
BssAI RCCGGY 2 cut(s) 337, 355
BssECI CCNNGG 3 cut(s) 52, 753, 1149
BssMI GATC 1 cut(s) 1189
BssT1I CCWWGG 2 cut(s) 753, 1149
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 3 cut(s) 679, 895, 1232
Bst6I CTCTTC 1 cut(s) 537
BstAUI TGTACA 1 cut(s) 522
BstC8I GCNNGC 1 cut(s) 353
BstDEI CTNAG 2 cut(s) 243, 1136
BstDSI CCRYGG 2 cut(s) 52, 753
BstEII GGTNACC 1 cut(s) 274
BstF5I GGATG 2 cut(s) 553, 1028
BstFNI CGCG 1 cut(s) 12
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 1 cut(s) 1192
BstMAI GTCTC 1 cut(s) 426
BstMBI GATC 1 cut(s) 1189
BstMWI GCNNNNNNNGC 2 cut(s) 1046, 1055
BstNI CCWGG 1 cut(s) 222
BstPI GGTNACC 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 220
BstSFI CTRYAG 2 cut(s) 869, 1044
BstUI CGCG 1 cut(s) 12
BstV1I GCAGC 7 cut(s) 251, 299, 485, 1027, 1030, 1045, 1058
BstV2I GAAGAC 1 cut(s) 99
BstXI CCANNNNNNTGG 1 cut(s) 1156
BsuI GTATCC 1 cut(s) 568
BtgI CCRYGG 2 cut(s) 52, 753
BtsCI GGATG 2 cut(s) 553, 1028
BtsIMutI CAGTG 1 cut(s) 1237
BveI ACCTGC 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 353
CaiI CAGNNNCTG 1 cut(s) 877
CfoI GCGC 1 cut(s) 14
Cfr10I RCCGGY 2 cut(s) 337, 355
Cfr13I GGNCC 1 cut(s) 99
CseI GACGC 1 cut(s) 479
Csp6I GTAC 4 cut(s) 212, 359, 523, 1068
CviAII CATG 4 cut(s) 167, 571, 754, 1033
CviQI GTAC 4 cut(s) 212, 359, 523, 1068
DdeI CTNAG 2 cut(s) 243, 1136
DpnI GATC 1 cut(s) 1191
DpnII GATC 1 cut(s) 1189
Eam1104I CTCTTC 1 cut(s) 537
EarI CTCTTC 1 cut(s) 537
Eco130I CCWWGG 2 cut(s) 753, 1149
Eco24I GRGCYC 1 cut(s) 790
Eco32I GATATC 1 cut(s) 589
Eco47I GGWCC 1 cut(s) 99
Eco57I CTGAAG 2 cut(s) 716, 1146
Eco91I GGTNACC 1 cut(s) 274
EcoO65I GGTNACC 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 220
EcoRV GATATC 1 cut(s) 589
EcoT14I CCWWGG 2 cut(s) 753, 1149
EcoT22I ATGCAT 1 cut(s) 829
EcoT38I GRGCYC 1 cut(s) 790
ErhI CCWWGG 2 cut(s) 753, 1149
FaeI CATG 4 cut(s) 170, 574, 757, 1036
FatI CATG 4 cut(s) 166, 570, 753, 1032
FauI CCCGC 1 cut(s) 17
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 8 cut(s) 148, 240, 288, 474, 1041, 1044, 1047, 1059
FokI GGATG 2 cut(s) 560, 1015
FriOI GRGCYC 1 cut(s) 790
Fsp4HI GCNGC 8 cut(s) 148, 240, 288, 474, 1041, 1044, 1047, 1059
FspBI CTAG 6 cut(s) 215, 494, 720, 737, 921, 980
GlaI GCGC 1 cut(s) 13
GluI GCNGC 8 cut(s) 148, 240, 288, 474, 1041, 1044, 1047, 1059
GsaI CCCAGC 1 cut(s) 175
GsuI CTGGAG 3 cut(s) 899, 1200, 1236
HapII CCGG 2 cut(s) 338, 356
HgaI GACGC 1 cut(s) 479
HhaI GCGC 1 cut(s) 14
Hin1II CATG 4 cut(s) 170, 574, 757, 1036
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HindIII AAGCTT 1 cut(s) 933
HinfI GANTC 3 cut(s) 385, 696, 993
HpaII CCGG 2 cut(s) 338, 356
HphI GGTGA 2 cut(s) 769, 936
Hpy166II GTNNAC 3 cut(s) 52, 232, 637
Hpy188I TCNGA 3 cut(s) 319, 820, 1126
Hpy188III TCNNGA 4 cut(s) 89, 382, 1090, 1207
Hpy8I GTNNAC 3 cut(s) 52, 232, 637
Hpy99I CGWCG 1 cut(s) 1248
HpyAV CCTTC 5 cut(s) 63, 125, 265, 367, 1168
HpyCH4III ACNGT 3 cut(s) 679, 895, 1232
HpyCH4IV ACGT 1 cut(s) 909
HpyCH4V TGCA 5 cut(s) 188, 266, 827, 871, 1046
HpyF10VI GCNNNNNNNGC 2 cut(s) 1046, 1055
HpyF3I CTNAG 2 cut(s) 243, 1136
HpySE526I ACGT 1 cut(s) 909
Hsp92II CATG 4 cut(s) 170, 574, 757, 1036
HspAI GCGC 1 cut(s) 12
Kzo9I GATC 1 cut(s) 1189
LmnI GCTCC 1 cut(s) 793
Lsp1109I GCAGC 7 cut(s) 251, 299, 485, 1027, 1030, 1045, 1058
LweI GCATC 5 cut(s) 247, 645, 753, 773, 1071
MaeI CTAG 6 cut(s) 215, 494, 720, 737, 921, 980
MaeII ACGT 1 cut(s) 909
MaeIII GTNAC 3 cut(s) 274, 715, 1118
MalI GATC 1 cut(s) 1191
MboI GATC 1 cut(s) 1189
MboII GAAGA 9 cut(s) 104, 148, 205, 308, 335, 343, 554, 973, 1139
MhlI GDGCHC 1 cut(s) 790
MluCI AATT 6 cut(s) 518, 592, 644, 687, 843, 1260
MlyI GAGTC 2 cut(s) 379, 1002
MmeI TCCRAC 2 cut(s) 541, 923
MnlI CCTC 8 cut(s) 29, 33, 103, 341, 538, 597, 623, 769
Mph1103I ATGCAT 1 cut(s) 829
MseI TTAA 1 cut(s) 1194
MspA1I CMGCKG 4 cut(s) 175, 290, 476, 1049
MspI CCGG 2 cut(s) 338, 356
MspR9I CCNGG 1 cut(s) 222
MvaI CCWGG 1 cut(s) 222
MvnI CGCG 1 cut(s) 12
MwoI GCNNNNNNNGC 2 cut(s) 1046, 1055
NcoI CCATGG 1 cut(s) 753
NdeII GATC 1 cut(s) 1189
NlaIII CATG 4 cut(s) 170, 574, 757, 1036
NlaIV GGNNCC 3 cut(s) 74, 206, 789
NmeAIII GCCGAG 1 cut(s) 581
NsiI ATGCAT 1 cut(s) 829
PfeI GAWTC 1 cut(s) 696
PflMI CCANNNNNTGG 1 cut(s) 178
PkrI GCNGC 8 cut(s) 149, 241, 289, 475, 1042, 1045, 1048, 1060
PleI GAGTC 2 cut(s) 379, 1001
PpsI GAGTC 2 cut(s) 379, 1001
Psp6I CCWGG 1 cut(s) 220
PspEI GGTNACC 1 cut(s) 274
PspFI CCCAGC 1 cut(s) 171
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 3 cut(s) 74, 206, 789
PspPI GGNCC 1 cut(s) 99
PstI CTGCAG 2 cut(s) 873, 1048
PstNI CAGNNNCTG 1 cut(s) 877
PvuII CAGCTG 4 cut(s) 175, 290, 476, 1049
RsaI GTAC 4 cut(s) 213, 360, 524, 1069
RsaNI GTAC 4 cut(s) 212, 359, 523, 1068
SaqAI TTAA 1 cut(s) 1194
SatI GCNGC 8 cut(s) 148, 240, 288, 474, 1041, 1044, 1047, 1059
Sau3AI GATC 1 cut(s) 1189
Sau96I GGNCC 1 cut(s) 99
ScaI AGTACT 1 cut(s) 213
SchI GAGTC 2 cut(s) 379, 1002
ScrFI CCNGG 1 cut(s) 222
SduI GDGCHC 1 cut(s) 790
SfaNI GCATC 5 cut(s) 247, 645, 753, 773, 1071
SfcI CTRYAG 2 cut(s) 869, 1044
SinI GGWCC 1 cut(s) 99
SpeI ACTAGT 1 cut(s) 214
Sse9I AATT 6 cut(s) 518, 592, 644, 687, 843, 1260
SsiI CCGC 2 cut(s) 10, 148
SspMI CTAG 6 cut(s) 215, 494, 720, 737, 921, 980
StyD4I CCNGG 1 cut(s) 220
StyI CCWWGG 2 cut(s) 753, 1149
TaaI ACNGT 3 cut(s) 679, 895, 1232
TaiI ACGT 1 cut(s) 912
TaqI TCGA 5 cut(s) 123, 129, 409, 513, 1172
TaqII GACCGA 1 cut(s) 708
TasI AATT 6 cut(s) 518, 592, 644, 687, 843, 1260
TatI WGTACW 3 cut(s) 211, 522, 1067
TauI GCSGC 1 cut(s) 150
TfiI GAWTC 1 cut(s) 696
Tru1I TTAA 1 cut(s) 1194
Tru9I TTAA 1 cut(s) 1194
TscAI CASTG 1 cut(s) 1237
TseI GCWGC 7 cut(s) 239, 287, 473, 1040, 1043, 1046, 1058
TspDTI ATGAA 6 cut(s) 155, 309, 336, 504, 531, 974
TspGWI ACGGA 1 cut(s) 69
TspRI CASTG 1 cut(s) 1237
Van91I CCANNNNNTGG 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 99
XapI RAATTY 3 cut(s) 644, 843, 1260
XmiI GTMKAC 1 cut(s) 231
XspI CTAG 6 cut(s) 215, 494, 720, 737, 921, 980
ZrmI AGTACT 1 cut(s) 213
Zsp2I ATGCAT 1 cut(s) 829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.