Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004277.1

Orthogroup ID

OG0001255

Physical Location & Seq

Genomic Coordinates Forward (+)

165385 .. 167867

Gene Structure 2483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004277.1_g000046.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

atggacacccaagcagttgttcctccacaacccagagggaatggtaaagtccatggagaagcaccgagaaggaaccagcgagtagctcttgaagacaggaccaactttgaggcaggtcaggtcgaaattgaagggaagattactcgccgcattacaaggagttttcatgcccagctgttggcaaatgcacagaagaacaatgggaacccagtactagtgccaggtgttgtagacaaggcagctaagaatagaaatgatgcccctgcaaagaaggttaccaagaaagcagctgatgaagatgtgaatgtggttagttctgatgaagaaaaagagaagccggtcaatagaggcaagccggtacaaggttcaaggaaggaagtcaagactctcacttcgattctaacagctcgaagcaaggctatggcttgtggagacactgacaaactaaaagagcagattgtggattttgacgcagctgatgtcaatgatgaactagcagttgttgaatatgtcgatgaattgtacaagttctacaaacttgaagaggatgactgccgagttggagattacatggatacacagccagatatcaattcaaagatgaggtctatcctcatagactggttgatagatgtccacaggaaatttgaactgatgcctgaaacattctaccttactgtgaatataattgatcgattcctttcaaggaggatggtaactaggagggaacttcagctagttggcatcagttccatggtgatagcatcaaagtatgaggaagtttgggctccacaggtcaatgattttgtgtgcttatcagactatgcatatacgggcaatcaaattcgtgtaatggagaaagcaatcctgcagaagttggagtggtatttgacagttccaacaccttatgtctttcttgctagatacatcaaagcttccatttcacctgatgatgagatgaagaatatggtttactttctagccgaacttggagtcttggattatcaaacaaccattcggcactccccatccatgatagctgctgcagctgtctatgctgcccattgtactctcaacaagatgcctttctggactgaaactttgaagcaccatactggttactctgaagaacagctaagggaatgtgccaaggttttggttggctttcactcgaaggctggcgaaagtgatcttaaagctcttttcaagaaatacacaaaacctgaatatggtgctgttgctcgtcgcactccagctaaaatttgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

422

Amino Acids

47.87

Weight (kDa)

8.04

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27185 AT5G01800
fragaria_vesca	FvH4_3g43340 FvH4_3g43340 FvH4_3g43340 FvH4_3g43340 FvH4_3g43340 FvH4_3g43460 FvH4_3g43460 FvH4_3g43460
malus_domestica	MD03G1022700.v1.1 MD03G1022800.v1.1 MD11G1027000.v1.1
prunus_persica	Prupe.6G021200_v2.0.a1 Prupe.6G021300_v2.0.a1
pyrus_communis	pycom03g01920 pycom11g02060
rosa_chinensis	RchiOBHm_Chr5g0077531 RchiOBHm_Chr5g0077551 RchiOBHm_Chr5g0077871 RchiOBHm_Chr7g0239321
rosa_laevigata	RLG00000000763 RLG00000006532 RLG00000013630 RLG00000017586 RLG00000022210 RLG00000028417 RLG00000036703 RLG00000036721
rosa_multiflora	Rmu_sc0001018.1_g000034 Rmu_sc0003058.1_g000003 Rmu_sc0004277.1_g000046 Rmu_sc0008456.1_g000002 Rmu_sc0031428.1_g000001 Rmu_ssc0000186.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004310 Rroxscaffold_1G00004440 Rroxscaffold_1G00004450 Rroxscaffold_3G00221010
rosa_rugosa	Rorug05G0455500 Rorug05G0455600 Rorug05G0456800.1 Rorug07G0327300 Rorug07G0327400
rosa_samantha	Rh5AG510200 Rh5AG511200 Rh5BG531900 Rh5BG533900 Rh5DG543900 Rh5DG544000 Rh5DG545300 Rh7AG480700
rosa_wichuraiana	Rw5G047290 Rw5G047440 Rw7G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	104
AccB7I	CCANNNNNTGG	1 cut(s)	178
AccI	GTMKAC	1 cut(s)	231
AciI	CCGC	1 cut(s)	148
AcsI	RAATTY	3 cut(s)	644, 843, 1260
AcuI	CTGAAG	2 cut(s)	716, 1146
AfaI	GTAC	4 cut(s)	213, 360, 524, 1069
AfiI	CCNNNNNNNGG	3 cut(s)	178, 362, 1229
AhlI	ACTAGT	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	220
AjuI	GAANNNNNNNTTGG	1 cut(s)	35
Alw26I	GTCTC	1 cut(s)	426
ApeKI	GCWGC	7 cut(s)	239, 287, 473, 1040, 1043, 1046, 1058
ApoI	RAATTY	3 cut(s)	644, 843, 1260
ArsI	GACNNNNNNTTYG	8 cut(s)	376, 408, 590, 622, 978, 1010, 1084, 1116
AspS9I	GGNCC	1 cut(s)	99
AsuHPI	GGTGA	2 cut(s)	769, 936
AvaII	GGWCC	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	790
BbsI	GAAGAC	1 cut(s)	99
BbvI	GCAGC	7 cut(s)	251, 299, 485, 1027, 1030, 1045, 1058
BccI	CCATC	2 cut(s)	706, 1036
BciT130I	CCWGG	1 cut(s)	222
BciVI	GTATCC	1 cut(s)	568
BcoDI	GTCTC	1 cut(s)	426
BcuI	ACTAGT	1 cut(s)	214
BfaI	CTAG	6 cut(s)	215, 494, 720, 737, 921, 980
BfmI	CTRYAG	2 cut(s)	869, 1044
BfuAI	ACCTGC	1 cut(s)	104
BfuI	GTATCC	1 cut(s)	568
BisI	GCNGC	8 cut(s)	148, 240, 288, 474, 1041, 1044, 1047, 1059
BlsI	GCNGC	8 cut(s)	149, 241, 289, 475, 1042, 1045, 1048, 1060
BmcAI	AGTACT	1 cut(s)	213
Bme1390I	CCNGG	1 cut(s)	222
Bme18I	GGWCC	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	99
BmiI	GGNNCC	3 cut(s)	74, 206, 789
BmrFI	CCNGG	1 cut(s)	222
BmrI	ACTGGG	1 cut(s)	203
BmsI	GCATC	5 cut(s)	247, 645, 753, 773, 1071
BmuI	ACTGGG	1 cut(s)	203
BpiI	GAAGAC	1 cut(s)	99
BpmI	CTGGAG	1 cut(s)	1236
Bpu10I	CCTNAGC	1 cut(s)	1136
Bsa29I	ATCGAT	1 cut(s)	694
BsaJI	CCNNGG	3 cut(s)	52, 753, 1149
Bsc4I	CCNNNNNNNGG	3 cut(s)	178, 362, 1229
Bse118I	RCCGGY	2 cut(s)	337, 355
Bse1I	ACTGG	3 cut(s)	209, 626, 1120
BseBI	CCWGG	1 cut(s)	222
BseCI	ATCGAT	1 cut(s)	694
BseDI	CCNNGG	3 cut(s)	52, 753, 1149
BseGI	GGATG	3 cut(s)	553, 717, 1028
BseLI	CCNNNNNNNGG	3 cut(s)	178, 362, 1229
BseNI	ACTGG	3 cut(s)	209, 626, 1120
BseXI	GCAGC	7 cut(s)	251, 299, 485, 1027, 1030, 1045, 1058
BseYI	CCCAGC	1 cut(s)	171
BshVI	ATCGAT	1 cut(s)	694
BsiSI	CCGG	2 cut(s)	338, 356
BslI	CCNNNNNNNGG	3 cut(s)	178, 362, 1229
BsmAI	GTCTC	1 cut(s)	426
Bsp1286I	GDGCHC	1 cut(s)	790
Bsp1407I	TGTACA	1 cut(s)	522
Bsp143I	GATC	2 cut(s)	691, 1189
Bsp19I	CCATGG	2 cut(s)	52, 753
BspACI	CCGC	1 cut(s)	148
BspDI	ATCGAT	1 cut(s)	694
BspLI	GGNNCC	3 cut(s)	74, 206, 789
BspMAI	CTGCAG	2 cut(s)	873, 1048
BspMI	ACCTGC	1 cut(s)	104
BsrFI	RCCGGY	2 cut(s)	337, 355
BsrGI	TGTACA	1 cut(s)	522
BsrI	ACTGG	3 cut(s)	209, 626, 1120
BssAI	RCCGGY	2 cut(s)	337, 355
BssECI	CCNNGG	3 cut(s)	52, 753, 1149
BssMI	GATC	2 cut(s)	691, 1189
BssT1I	CCWWGG	3 cut(s)	52, 753, 1149
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	2 cut(s)	679, 895
Bst6I	CTCTTC	1 cut(s)	537
BstAUI	TGTACA	1 cut(s)	522
BstC8I	GCNNGC	2 cut(s)	353, 1180
BstDEI	CTNAG	2 cut(s)	243, 1136
BstDSI	CCRYGG	2 cut(s)	52, 753
BstEII	GGTNACC	1 cut(s)	274
BstF5I	GGATG	3 cut(s)	553, 717, 1028
BstKTI	GATC	2 cut(s)	694, 1192
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	2 cut(s)	691, 1189
BstMWI	GCNNNNNNNGC	2 cut(s)	1046, 1055
BstNI	CCWGG	1 cut(s)	222
BstPI	GGTNACC	1 cut(s)	274
BstSCI	CCNGG	1 cut(s)	220
BstSFI	CTRYAG	2 cut(s)	869, 1044
BstV1I	GCAGC	7 cut(s)	251, 299, 485, 1027, 1030, 1045, 1058
BstV2I	GAAGAC	1 cut(s)	99
BstXI	CCANNNNNNTGG	1 cut(s)	1156
Bsu15I	ATCGAT	1 cut(s)	694
BsuI	GTATCC	1 cut(s)	568
BsuTUI	ATCGAT	1 cut(s)	694
BtgI	CCRYGG	2 cut(s)	52, 753
BtsCI	GGATG	3 cut(s)	553, 717, 1028
BtsIMutI	CAGTG	1 cut(s)	435
BveI	ACCTGC	1 cut(s)	104
Cac8I	GCNNGC	2 cut(s)	353, 1180
Cfr10I	RCCGGY	2 cut(s)	337, 355
Cfr13I	GGNCC	1 cut(s)	99
ClaI	ATCGAT	1 cut(s)	694
CseI	GACGC	1 cut(s)	479
Csp6I	GTAC	4 cut(s)	212, 359, 523, 1068
CviAII	CATG	5 cut(s)	53, 167, 571, 754, 1033
CviQI	GTAC	4 cut(s)	212, 359, 523, 1068
DdeI	CTNAG	2 cut(s)	243, 1136
DpnI	GATC	2 cut(s)	693, 1191
DpnII	GATC	2 cut(s)	691, 1189
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
Eco130I	CCWWGG	3 cut(s)	52, 753, 1149
Eco24I	GRGCYC	1 cut(s)	790
Eco32I	GATATC	1 cut(s)	589
Eco47I	GGWCC	1 cut(s)	99
Eco57I	CTGAAG	2 cut(s)	716, 1146
Eco91I	GGTNACC	1 cut(s)	274
EcoO65I	GGTNACC	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	220
EcoRV	GATATC	1 cut(s)	589
EcoT14I	CCWWGG	3 cut(s)	52, 753, 1149
EcoT22I	ATGCAT	1 cut(s)	829
EcoT38I	GRGCYC	1 cut(s)	790
ErhI	CCWWGG	3 cut(s)	52, 753, 1149
FaeI	CATG	5 cut(s)	56, 170, 574, 757, 1036
FatI	CATG	5 cut(s)	52, 166, 570, 753, 1032
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	8 cut(s)	148, 240, 288, 474, 1041, 1044, 1047, 1059
FokI	GGATG	3 cut(s)	560, 724, 1015
FriOI	GRGCYC	1 cut(s)	790
Fsp4HI	GCNGC	8 cut(s)	148, 240, 288, 474, 1041, 1044, 1047, 1059
FspBI	CTAG	6 cut(s)	215, 494, 720, 737, 921, 980
GluI	GCNGC	8 cut(s)	148, 240, 288, 474, 1041, 1044, 1047, 1059
GsaI	CCCAGC	1 cut(s)	175
GsuI	CTGGAG	1 cut(s)	1236
HapII	CCGG	2 cut(s)	338, 356
HgaI	GACGC	1 cut(s)	479
Hin1II	CATG	5 cut(s)	56, 170, 574, 757, 1036
HindIII	AAGCTT	1 cut(s)	933
HinfI	GANTC	4 cut(s)	385, 397, 696, 993
HpaII	CCGG	2 cut(s)	338, 356
HphI	GGTGA	2 cut(s)	769, 936
Hpy166II	GTNNAC	3 cut(s)	232, 637, 973
Hpy188I	TCNGA	3 cut(s)	319, 820, 1126
Hpy188III	TCNNGA	4 cut(s)	89, 382, 1090, 1207
Hpy8I	GTNNAC	3 cut(s)	232, 637, 973
Hpy99I	CGWCG	1 cut(s)	1248
HpyAV	CCTTC	5 cut(s)	63, 125, 265, 367, 1168
HpyCH4III	ACNGT	2 cut(s)	679, 895
HpyCH4V	TGCA	5 cut(s)	188, 266, 827, 871, 1046
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1046, 1055
HpyF3I	CTNAG	2 cut(s)	243, 1136
Hsp92II	CATG	5 cut(s)	56, 170, 574, 757, 1036
Kzo9I	GATC	2 cut(s)	691, 1189
LmnI	GCTCC	1 cut(s)	793
Lsp1109I	GCAGC	7 cut(s)	251, 299, 485, 1027, 1030, 1045, 1058
LweI	GCATC	5 cut(s)	247, 645, 753, 773, 1071
MaeI	CTAG	6 cut(s)	215, 494, 720, 737, 921, 980
MaeIII	GTNAC	3 cut(s)	274, 715, 1118
MalI	GATC	2 cut(s)	693, 1191
MboI	GATC	2 cut(s)	691, 1189
MboII	GAAGA	8 cut(s)	104, 148, 205, 308, 335, 554, 973, 1139
MhlI	GDGCHC	1 cut(s)	790
MluCI	AATT	7 cut(s)	126, 518, 592, 644, 687, 843, 1260
MlyI	GAGTC	2 cut(s)	379, 1002
MmeI	TCCRAC	3 cut(s)	541, 858, 923
Mph1103I	ATGCAT	1 cut(s)	829
MseI	TTAA	1 cut(s)	1194
MspA1I	CMGCKG	4 cut(s)	175, 290, 476, 1049
MspI	CCGG	2 cut(s)	338, 356
MspR9I	CCNGG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	1046, 1055
NcoI	CCATGG	2 cut(s)	52, 753
NdeII	GATC	2 cut(s)	691, 1189
NlaIII	CATG	5 cut(s)	56, 170, 574, 757, 1036
NlaIV	GGNNCC	3 cut(s)	74, 206, 789
NmeAIII	GCCGAG	1 cut(s)	581
NsiI	ATGCAT	1 cut(s)	829
PfeI	GAWTC	2 cut(s)	397, 696
PflMI	CCANNNNNTGG	1 cut(s)	178
PkrI	GCNGC	8 cut(s)	149, 241, 289, 475, 1042, 1045, 1048, 1060
PleI	GAGTC	2 cut(s)	379, 1001
PpsI	GAGTC	2 cut(s)	379, 1001
Psp6I	CCWGG	1 cut(s)	220
PspEI	GGTNACC	1 cut(s)	274
PspFI	CCCAGC	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	3 cut(s)	74, 206, 789
PspPI	GGNCC	1 cut(s)	99
PstI	CTGCAG	2 cut(s)	873, 1048
PvuII	CAGCTG	4 cut(s)	175, 290, 476, 1049
RsaI	GTAC	4 cut(s)	213, 360, 524, 1069
RsaNI	GTAC	4 cut(s)	212, 359, 523, 1068
SaqAI	TTAA	1 cut(s)	1194
SatI	GCNGC	8 cut(s)	148, 240, 288, 474, 1041, 1044, 1047, 1059
Sau3AI	GATC	2 cut(s)	691, 1189
Sau96I	GGNCC	1 cut(s)	99
ScaI	AGTACT	1 cut(s)	213
SchI	GAGTC	2 cut(s)	379, 1002
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	1 cut(s)	790
SfaNI	GCATC	5 cut(s)	247, 645, 753, 773, 1071
SfcI	CTRYAG	2 cut(s)	869, 1044
SinI	GGWCC	1 cut(s)	99
SpeI	ACTAGT	1 cut(s)	214
Sse9I	AATT	7 cut(s)	126, 518, 592, 644, 687, 843, 1260
SsiI	CCGC	1 cut(s)	148
SspMI	CTAG	6 cut(s)	215, 494, 720, 737, 921, 980
StyD4I	CCNGG	1 cut(s)	220
StyI	CCWWGG	3 cut(s)	52, 753, 1149
TaaI	ACNGT	2 cut(s)	679, 895
TaqI	TCGA	6 cut(s)	123, 395, 409, 513, 694, 1172
TasI	AATT	7 cut(s)	126, 518, 592, 644, 687, 843, 1260
TatI	WGTACW	3 cut(s)	211, 522, 1067
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	2 cut(s)	397, 696
Tru1I	TTAA	1 cut(s)	1194
Tru9I	TTAA	1 cut(s)	1194
TscAI	CASTG	1 cut(s)	442
TseI	GCWGC	7 cut(s)	239, 287, 473, 1040, 1043, 1046, 1058
TspDTI	ATGAA	6 cut(s)	155, 309, 336, 504, 531, 974
TspRI	CASTG	1 cut(s)	442
Van91I	CCANNNNNTGG	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	99
XapI	RAATTY	3 cut(s)	644, 843, 1260
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	6 cut(s)	215, 494, 720, 737, 921, 980
ZrmI	AGTACT	1 cut(s)	213
Zsp2I	ATGCAT	1 cut(s)	829

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.