pycom11g02060

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0001255
Physical Location & Seq
Forward (+)
1774494 .. 1775472
979 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g02060.3

Sequence Viewer

Length: 711 bp
ATGGATTCTCAACCAGACATAAATACAAAGATGAGATCAATCCTCATAGACTGGTTGATAGATGTTCACAGGAAATTTGAACTGATGCCTGAAACCTTCTACCTGACTGTGAACATAATCGATCGCTACCTTTCGAAGAAGATTATTTCAAGGAGGGAACTTCAGCTAATTGGTATTAGTTCTATGGTCATAGCATCCAAATATGAGGAAATATGGGCTCCACAGGTCAATGACTTTGTTTGCTTGTCAGACTACGCATACACCAGCGATCAGATACTACGCATGGAGAAAGCAATCCTGGGGAAGCTGGAGTGGTATTTGACAGTTCCCACCCCTTATGTCTTCCTGTCTCGATACATCAAAGCTTCTGTTTCGCCTGATGAGGAGACGAAGAACATGGTTTTCTTTCTAGCTGAGCTCGGAATCCTGCATTATCCGACTATCATTCTGTACTCCCCATCCATGATATCTGCTGCCGCCGTCTATGCTGCGCGTTATACTCTCAATAAGAATCCTTTCTGGACTGAAACTTTGAAGCACCACACTGGCTATTCTGAAGACCAATTGAGGGACTGTGCCAAGCTCTTGGTCGGCCTTCACTTGAATGCAGCGGAAAGTAAACTTCAAGCAGTTTACAGGAAATTCTCAAGGGCGGATTATGGTGCTGTTGCTCTTTCCGTTCCAGCCAAAAGTTTTCAGCCATCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

237

Amino Acids

27.11

Weight (kDa)

7.72

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 493
AciI CCGC 3 cut(s) 477, 611, 653
AcsI RAATTY 2 cut(s) 74, 641
AcuI CTGAAG 2 cut(s) 146, 576
AfaI GTAC 1 cut(s) 452
AfiI CCNNNNNNNGG 1 cut(s) 568
AgsI TTSAA 5 cut(s) 80, 150, 535, 604, 626
AjnI CCWGG 1 cut(s) 297
AluBI AGCT 6 cut(s) 166, 307, 365, 413, 418, 583
AluI AGCT 6 cut(s) 166, 307, 365, 413, 418, 583
Alw21I GWGCWC 1 cut(s) 420
Alw26I GTCTC 2 cut(s) 354, 380
AoxI GGCC 1 cut(s) 592
ApeKI GCWGC 3 cut(s) 473, 488, 608
ApoI RAATTY 2 cut(s) 74, 641
ArsI GACNNNNNNTTYG 2 cut(s) 514, 546
Asp700I GAANNNNTTC 1 cut(s) 515
AspLEI GCGC 1 cut(s) 493
AsuII TTCGAA 1 cut(s) 134
BanII GRGCYC 2 cut(s) 220, 420
BbsI GAAGAC 2 cut(s) 334, 564
Bbv12I GWGCWC 1 cut(s) 420
BbvI GCAGC 3 cut(s) 460, 475, 620
BccI CCATC 2 cut(s) 466, 709
BceAI ACGGC 1 cut(s) 464
BciT130I CCWGG 1 cut(s) 299
BcoDI GTCTC 2 cut(s) 354, 380
BfaI CTAG 1 cut(s) 410
BisI GCNGC 4 cut(s) 474, 477, 489, 609
BlpI GCTNAGC 1 cut(s) 414
BlsI GCNGC 4 cut(s) 475, 478, 490, 610
Bme1390I CCNGG 1 cut(s) 299
BmiI GGNNCC 1 cut(s) 219
BmrFI CCNGG 1 cut(s) 299
BmsI GCATC 2 cut(s) 75, 203
BpiI GAAGAC 2 cut(s) 334, 564
BpmI CTGGAG 1 cut(s) 329
Bpu1102I GCTNAGC 1 cut(s) 414
Bpu14I TTCGAA 1 cut(s) 134
BpuEI CTTGAG 1 cut(s) 631
Bsa29I ATCGAT 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 298
Bsc4I CCNNNNNNNGG 1 cut(s) 568
Bse1I ACTGG 2 cut(s) 56, 550
BseBI CCWGG 1 cut(s) 299
BseCI ATCGAT 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 298
BseGI GGATG 2 cut(s) 194, 458
BseLI CCNNNNNNNGG 1 cut(s) 568
BseMII CTCAG 1 cut(s) 405
BseNI ACTGG 2 cut(s) 56, 550
BseRI GAGGAG 1 cut(s) 398
BseXI GCAGC 3 cut(s) 460, 475, 620
Bsh1236I CGCG 1 cut(s) 493
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 1 cut(s) 594
BshVI ATCGAT 1 cut(s) 120
BsiEI CGRYCG 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 420
BslFI GGGAC 1 cut(s) 584
BslI CCNNNNNNNGG 1 cut(s) 568
BsmAI GTCTC 2 cut(s) 354, 380
BsmBI CGTCTC 1 cut(s) 380
BsmFI GGGAC 1 cut(s) 584
BsmI GAATGC 1 cut(s) 610
BsnI GGCC 1 cut(s) 594
Bsp119I TTCGAA 1 cut(s) 134
Bsp1286I GDGCHC 2 cut(s) 220, 420
Bsp143I GATC 3 cut(s) 35, 121, 268
Bsp1720I GCTNAGC 1 cut(s) 414
BspACI CCGC 3 cut(s) 477, 611, 653
BspANI GGCC 1 cut(s) 594
BspCNI CTCAG 1 cut(s) 406
BspDI ATCGAT 1 cut(s) 120
BspFNI CGCG 1 cut(s) 493
BspHI TCATGA 1 cut(s) 707
BspLI GGNNCC 1 cut(s) 219
BspT104I TTCGAA 1 cut(s) 134
BsrI ACTGG 2 cut(s) 56, 550
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 3 cut(s) 35, 121, 268
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 3 cut(s) 109, 325, 575
BstBI TTCGAA 1 cut(s) 134
BstDEI CTNAG 1 cut(s) 414
BstF5I GGATG 2 cut(s) 194, 458
BstFNI CGCG 1 cut(s) 493
BstHHI GCGC 1 cut(s) 493
BstKTI GATC 3 cut(s) 38, 124, 271
BstMAI GTCTC 2 cut(s) 354, 380
BstMBI GATC 3 cut(s) 35, 121, 268
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 1 cut(s) 485
BstNI CCWGG 1 cut(s) 299
BstSCI CCNGG 1 cut(s) 297
BstUI CGCG 1 cut(s) 493
BstV1I GCAGC 3 cut(s) 460, 475, 620
BstV2I GAAGAC 2 cut(s) 334, 564
BstXI CCANNNNNNTGG 1 cut(s) 586
Bsu15I ATCGAT 1 cut(s) 120
BsuRI GGCC 1 cut(s) 594
BsuTUI ATCGAT 1 cut(s) 120
BtsCI GGATG 2 cut(s) 194, 458
BtsIMutI CAGTG 1 cut(s) 543
CciI TCATGA 1 cut(s) 707
CfoI GCGC 1 cut(s) 493
ClaI ATCGAT 1 cut(s) 120
Csp6I GTAC 1 cut(s) 451
CviAII CATG 4 cut(s) 283, 397, 463, 708
CviQI GTAC 1 cut(s) 451
DdeI CTNAG 1 cut(s) 414
DpnI GATC 3 cut(s) 37, 123, 270
DpnII GATC 3 cut(s) 35, 121, 268
EciI GGCGGA 1 cut(s) 668
Ecl136II GAGCTC 1 cut(s) 418
Eco24I GRGCYC 2 cut(s) 220, 420
Eco32I GATATC 1 cut(s) 468
Eco53kI GAGCTC 1 cut(s) 418
Eco57I CTGAAG 2 cut(s) 146, 576
EcoICRI GAGCTC 1 cut(s) 418
EcoRII CCWGG 1 cut(s) 297
EcoRV GATATC 1 cut(s) 468
EcoT38I GRGCYC 2 cut(s) 220, 420
Esp3I CGTCTC 1 cut(s) 380
FaeI CATG 4 cut(s) 286, 400, 466, 711
FaqI GGGAC 1 cut(s) 584
FatI CATG 4 cut(s) 282, 396, 462, 707
Fnu4HI GCNGC 4 cut(s) 474, 477, 489, 609
FokI GGATG 2 cut(s) 181, 445
FriOI GRGCYC 2 cut(s) 220, 420
Fsp4HI GCNGC 4 cut(s) 474, 477, 489, 609
FspBI CTAG 1 cut(s) 410
GlaI GCGC 1 cut(s) 492
GluI GCNGC 4 cut(s) 474, 477, 489, 609
GsuI CTGGAG 1 cut(s) 329
HaeIII GGCC 1 cut(s) 594
HhaI GCGC 1 cut(s) 493
Hin1II CATG 4 cut(s) 286, 400, 466, 711
Hin6I GCGC 1 cut(s) 491
HinP1I GCGC 1 cut(s) 491
HindIII AAGCTT 1 cut(s) 363
HinfI GANTC 3 cut(s) 5, 423, 511
Hpy166II GTNNAC 4 cut(s) 67, 112, 620, 634
Hpy188I TCNGA 5 cut(s) 250, 273, 422, 438, 556
Hpy188III TCNNGA 3 cut(s) 351, 520, 708
Hpy8I GTNNAC 4 cut(s) 67, 112, 620, 634
HpyAV CCTTC 2 cut(s) 106, 605
HpyCH4III ACNGT 3 cut(s) 109, 325, 575
HpyCH4V TGCA 2 cut(s) 430, 608
HpyF10VI GCNNNNNNNGC 1 cut(s) 485
HpyF3I CTNAG 1 cut(s) 414
Hsp92II CATG 4 cut(s) 286, 400, 466, 711
HspAI GCGC 1 cut(s) 491
Kzo9I GATC 3 cut(s) 35, 121, 268
LmnI GCTCC 1 cut(s) 223
Lsp1109I GCAGC 3 cut(s) 460, 475, 620
LweI GCATC 2 cut(s) 75, 203
MaeI CTAG 1 cut(s) 410
MalI GATC 3 cut(s) 37, 123, 270
MboI GATC 3 cut(s) 35, 121, 268
MboII GAAGA 6 cut(s) 148, 151, 334, 403, 569, 696
MfeI CAATTG 1 cut(s) 563
MhlI GDGCHC 2 cut(s) 220, 420
MluCI AATT 4 cut(s) 74, 168, 563, 641
MmeI TCCRAC 1 cut(s) 461
MnlI CCTC 5 cut(s) 53, 147, 199, 376, 561
MroXI GAANNNNTTC 1 cut(s) 515
MslI CAYNNNNRTG 2 cut(s) 603, 706
MspA1I CMGCKG 1 cut(s) 611
MspR9I CCNGG 1 cut(s) 299
MunI CAATTG 1 cut(s) 563
Mva1269I GAATGC 1 cut(s) 610
MvaI CCWGG 1 cut(s) 299
MvnI CGCG 1 cut(s) 493
MwoI GCNNNNNNNGC 1 cut(s) 485
NdeII GATC 3 cut(s) 35, 121, 268
NlaIII CATG 4 cut(s) 286, 400, 466, 711
NlaIV GGNNCC 1 cut(s) 219
NspV TTCGAA 1 cut(s) 134
PagI TCATGA 1 cut(s) 707
PctI GAATGC 1 cut(s) 610
PdmI GAANNNNTTC 1 cut(s) 515
PfeI GAWTC 3 cut(s) 5, 423, 511
PkrI GCNGC 4 cut(s) 475, 478, 490, 610
Ple19I CGATCG 1 cut(s) 124
Psp124BI GAGCTC 1 cut(s) 420
Psp6I CCWGG 1 cut(s) 297
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 219
PvuI CGATCG 1 cut(s) 124
RsaI GTAC 1 cut(s) 452
RsaNI GTAC 1 cut(s) 451
RseI CAYNNNNRTG 2 cut(s) 603, 706
SacI GAGCTC 1 cut(s) 420
SatI GCNGC 4 cut(s) 474, 477, 489, 609
Sau3AI GATC 3 cut(s) 35, 121, 268
ScrFI CCNGG 1 cut(s) 299
SduI GDGCHC 2 cut(s) 220, 420
SfaNI GCATC 2 cut(s) 75, 203
SfuI TTCGAA 1 cut(s) 134
SmiMI CAYNNNNRTG 2 cut(s) 603, 706
SmlI CTYRAG 1 cut(s) 646
SmoI CTYRAG 1 cut(s) 646
Sse9I AATT 4 cut(s) 74, 168, 563, 641
SsiI CCGC 3 cut(s) 477, 611, 653
SspMI CTAG 1 cut(s) 410
SstI GAGCTC 1 cut(s) 420
StyD4I CCNGG 1 cut(s) 297
TaaI ACNGT 3 cut(s) 109, 325, 575
TaqI TCGA 3 cut(s) 120, 134, 352
TasI AATT 4 cut(s) 74, 168, 563, 641
TatI WGTACW 1 cut(s) 450
TauI GCSGC 1 cut(s) 479
TfiI GAWTC 3 cut(s) 5, 423, 511
TscAI CASTG 1 cut(s) 550
TseI GCWGC 3 cut(s) 473, 488, 608
TspDTI ATGAA 1 cut(s) 696
TspGWI ACGGA 1 cut(s) 667
TspRI CASTG 1 cut(s) 550
XapI RAATTY 2 cut(s) 74, 641
XmnI GAANNNNTTC 1 cut(s) 515
XspI CTAG 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.