RchiOBHm_Chr7g0239321

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001255
Physical Location & Seq
Reverse (-)
64796876 .. 64800013
3138 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21446

Sequence Viewer

Length: 1329 bp
ATGGACACCAGAGGTGATGGTGAAGTGAATGGAGAAGTACCAAGAAGGAACCAAAGAGTAGCTCTTCAAGATAGGACCAATGTCGAGGCAGCCCAGCTGTTAGCAAATGCACAGAAGAACAATGTGAACCCAGTGCTAGTGCCTAGTCTTCAAGACAAGGTAGCTGTTAATAGAAAATGTGCCCCTGCAAATAAGGGTACCAAGAAGAAACCCATAGATGAAGATGTGGTTGTTATAAGTTCTGATGAAGAAGAGGAGAAACCTGTGCTACTTCCTTGTCTTCAAGACAAGGTAGCTCTCAATAGAAAATATGCCCCTGAAAAGAAGGGTACCAAGAAGAAACCCATAGATGAAGATGTGGTTGGTGTAAGTTCTGATGAAGAAGAGGAGAAACCTGTCAGTAATAGAAGCAAGCCATCACAAGGTTCAAGGAAGGAAGTGAAGACTCTCACTTCGATTCTAACTGCTCGAAGCGAGGCTATGGCTGGTGGAGCCACCAACAAGCCAAAGGAACAAGTTGTGGACTTTGATTCAGCTGATTTTAATGATGAATTAGCAGTTGTTGAGTATGTTGATGATATGTACAAGTTCTACAAACTTGAAGAGGATGGGAACCGAGTCGGAGATTACTTGGACTCACAGCCAGAAGTCAATTCAAAGATGAGATCAATCCTCATAGACTGGATTATAGAAGTTCACAGGAAATTTGAACTGATGCCAGAAACATTCTACCTCACTGTGAATATAATTGACAGATATCTTTCAGTGAGGATTGTTCCTAGGAGGGAACTTCAGCTACTTGGGATTAGTTCTATGGTGATAGCATCAAAATATGAGGAAGTTTGGGCTCCACAGGTCAATGACTTTGTTTGCATATCAGACGATGCATATATGGAAGATGAGATTCGAAAAATGGAGAAAGAAATCTTGGGGAAGCTGGAGTGGTATTTGACAGTTCCAACACCTTATGTGTTTCTTGCTAGATACATCAAAGCTTCTGTTTCACCTGATGATGAGATGAAGAATATGGTTTTCTTCCTAGCCGAGCTTGGAGTCATGCATTATCAAACAATCATCTCGTACTCTCCATCCATGATAGCTGCTGCAGCCGTCTATGCTGCCCGTTGTACCCTCAACAAAACCCCTTTCTGGACTGCAACTCTGAAGCACCACACTGGCTACTTGGAAGAACAGTTAAGGGAATGTGCTAAGGTCTTGGTTGGCTTTCACTCGAATGCTGCAGAAAGTAATCTTAAAGCTGTCTACCGGAAATACTCAAAACCTGAATTTGGAGCTGTAGCTCATCTCAATCCGGCAAAAAGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

442

Amino Acids

49.98

Weight (kDa)

5.56

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 193 - 318 1.2e-47 Cyclin, N-terminal domain
Cyclin_C PF02984 320 - 438 1.8e-39 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 236
Acc65I GGTACC 2 cut(s) 197, 329
AccB1I GGYRCC 2 cut(s) 197, 329
AccI GTMKAC 1 cut(s) 1263
AcsI RAATTY 2 cut(s) 704, 1286
AcuI CTGAAG 2 cut(s) 776, 1184
AfaI GTAC 6 cut(s) 39, 199, 331, 584, 1082, 1129
AfiI CCNNNNNNNGG 3 cut(s) 422, 1149, 1289
AgsI TTSAA 7 cut(s) 68, 152, 284, 429, 602, 657, 710
AjuI GAANNNNNNNTTGG 4 cut(s) 345, 377, 911, 943
ApeKI GCWGC 6 cut(s) 89, 1100, 1103, 1106, 1118, 1238
ApoI RAATTY 2 cut(s) 704, 1286
ArsI GACNNNNNNTTYG 2 cut(s) 436, 468
Asp718I GGTACC 2 cut(s) 197, 329
AspA2I CCTAGG 1 cut(s) 779
AspS9I GGNCC 1 cut(s) 75
AsuHPI GGTGA 4 cut(s) 26, 32, 829, 996
AsuII TTCGAA 1 cut(s) 907
AvaII GGWCC 1 cut(s) 75
AvrII CCTAGG 1 cut(s) 779
BaeGI GKGCMC 1 cut(s) 184
BanI GGYRCC 2 cut(s) 197, 329
BanII GRGCYC 1 cut(s) 850
BbsI GAAGAC 3 cut(s) 140, 272, 449
BbvI GCAGC 6 cut(s) 101, 1087, 1090, 1105, 1118, 1225
BccI CCATC 4 cut(s) 11, 424, 602, 1096
BceAI ACGGC 1 cut(s) 1094
BfaI CTAG 5 cut(s) 137, 144, 780, 981, 1040
BfmI CTRYAG 3 cut(s) 1104, 1239, 1296
BisI GCNGC 6 cut(s) 90, 1101, 1104, 1107, 1119, 1239
BlnI CCTAGG 1 cut(s) 779
BlsI GCNGC 6 cut(s) 91, 1102, 1105, 1108, 1120, 1240
Bme18I GGWCC 1 cut(s) 75
BmgT120I GGNCC 1 cut(s) 75
BmiI GGNNCC 6 cut(s) 50, 199, 331, 493, 614, 849
BmrI ACTGGG 1 cut(s) 125
BmsI GCATC 3 cut(s) 705, 833, 874
BmuI ACTGGG 1 cut(s) 125
BoxI GACNNNNGTC 1 cut(s) 80
BpiI GAAGAC 3 cut(s) 140, 272, 449
BpmI CTGGAG 1 cut(s) 959
Bpu10I CCTNAGC 1 cut(s) 1209
Bpu14I TTCGAA 1 cut(s) 907
BsaJI CCNNGG 1 cut(s) 779
BsaWI WCCGGW 1 cut(s) 1266
Bsc4I CCNNNNNNNGG 3 cut(s) 422, 1149, 1289
Bse1I ACTGG 3 cut(s) 131, 686, 1180
BseDI CCNNGG 1 cut(s) 779
BseGI GGATG 2 cut(s) 613, 1088
BseLI CCNNNNNNNGG 3 cut(s) 422, 1149, 1289
BseNI ACTGG 3 cut(s) 131, 686, 1180
BseRI GAGGAG 2 cut(s) 269, 401
BseSI GKGCMC 1 cut(s) 184
BseXI GCAGC 6 cut(s) 101, 1087, 1090, 1105, 1118, 1225
BseYI CCCAGC 1 cut(s) 93
BshNI GGYRCC 2 cut(s) 197, 329
BsiSI CCGG 2 cut(s) 1267, 1313
BslI CCNNNNNNNGG 3 cut(s) 422, 1149, 1289
BsmI GAATGC 1 cut(s) 1240
Bsp119I TTCGAA 1 cut(s) 907
Bsp1286I GDGCHC 2 cut(s) 184, 850
Bsp1407I TGTACA 1 cut(s) 582
Bsp143I GATC 1 cut(s) 665
BspLI GGNNCC 6 cut(s) 50, 199, 331, 493, 614, 849
BspMAI CTGCAG 2 cut(s) 1108, 1243
BspQI GCTCTTC 1 cut(s) 69
BspT104I TTCGAA 1 cut(s) 907
BspT107I GGYRCC 2 cut(s) 197, 329
BsrGI TGTACA 1 cut(s) 582
BsrI ACTGG 3 cut(s) 131, 686, 1180
BssECI CCNNGG 1 cut(s) 779
BssMI GATC 1 cut(s) 665
BssT1I CCWWGG 1 cut(s) 779
Bst4CI ACNGT 3 cut(s) 739, 955, 1194
Bst6I CTCTTC 4 cut(s) 69, 246, 378, 597
BstAUI TGTACA 1 cut(s) 582
BstBI TTCGAA 1 cut(s) 907
BstC8I GCNNGC 1 cut(s) 413
BstDEI CTNAG 1 cut(s) 1209
BstF5I GGATG 2 cut(s) 613, 1088
BstKTI GATC 1 cut(s) 668
BstMBI GATC 1 cut(s) 665
BstMWI GCNNNNNNNGC 3 cut(s) 491, 1106, 1115
BstPAI GACNNNNGTC 1 cut(s) 80
BstSFI CTRYAG 3 cut(s) 1104, 1239, 1296
BstSLI GKGCMC 1 cut(s) 184
BstV1I GCAGC 6 cut(s) 101, 1087, 1090, 1105, 1118, 1225
BstV2I GAAGAC 3 cut(s) 140, 272, 449
BtsCI GGATG 2 cut(s) 613, 1088
BtsIMutI CAGTG 4 cut(s) 138, 735, 771, 1173
Cac8I GCNNGC 1 cut(s) 413
Cfr13I GGNCC 1 cut(s) 75
Csp6I GTAC 6 cut(s) 38, 198, 330, 583, 1081, 1128
CviAII CATG 2 cut(s) 1057, 1093
CviQI GTAC 6 cut(s) 38, 198, 330, 583, 1081, 1128
DdeI CTNAG 1 cut(s) 1209
DpnI GATC 1 cut(s) 667
DpnII GATC 1 cut(s) 665
Eam1104I CTCTTC 4 cut(s) 69, 246, 378, 597
EarI CTCTTC 4 cut(s) 69, 246, 378, 597
Eco130I CCWWGG 1 cut(s) 779
Eco24I GRGCYC 1 cut(s) 850
Eco32I GATATC 1 cut(s) 758
Eco47I GGWCC 1 cut(s) 75
Eco57I CTGAAG 2 cut(s) 776, 1184
EcoRV GATATC 1 cut(s) 758
EcoT14I CCWWGG 1 cut(s) 779
EcoT22I ATGCAT 2 cut(s) 889, 1062
EcoT38I GRGCYC 1 cut(s) 850
ErhI CCWWGG 1 cut(s) 779
FaeI CATG 2 cut(s) 1060, 1096
FatI CATG 2 cut(s) 1056, 1092
FblI GTMKAC 1 cut(s) 1263
Fnu4HI GCNGC 6 cut(s) 90, 1101, 1104, 1107, 1119, 1239
FokI GGATG 2 cut(s) 620, 1075
FriOI GRGCYC 1 cut(s) 850
Fsp4HI GCNGC 6 cut(s) 90, 1101, 1104, 1107, 1119, 1239
FspBI CTAG 5 cut(s) 137, 144, 780, 981, 1040
GluI GCNGC 6 cut(s) 90, 1101, 1104, 1107, 1119, 1239
GsaI CCCAGC 1 cut(s) 97
GsuI CTGGAG 1 cut(s) 959
HapII CCGG 2 cut(s) 1267, 1313
Hin1II CATG 2 cut(s) 1060, 1096
HindIII AAGCTT 2 cut(s) 993, 1321
HinfI GANTC 7 cut(s) 445, 457, 530, 618, 635, 904, 1053
HpaII CCGG 2 cut(s) 1267, 1313
HphI GGTGA 4 cut(s) 26, 32, 829, 996
Hpy166II GTNNAC 4 cut(s) 127, 523, 697, 1264
Hpy188I TCNGA 5 cut(s) 244, 376, 623, 880, 1164
Hpy188III TCNNGA 4 cut(s) 68, 152, 284, 1150
Hpy8I GTNNAC 4 cut(s) 127, 523, 697, 1264
HpyAV CCTTC 3 cut(s) 39, 319, 427
HpyCH4III ACNGT 3 cut(s) 739, 955, 1194
HpyCH4V TGCA 8 cut(s) 110, 188, 873, 887, 1060, 1106, 1157, 1241
HpyF10VI GCNNNNNNNGC 3 cut(s) 491, 1106, 1115
HpyF3I CTNAG 1 cut(s) 1209
Hsp92II CATG 2 cut(s) 1060, 1096
KpnI GGTACC 2 cut(s) 201, 333
Kzo9I GATC 1 cut(s) 665
LguI GCTCTTC 1 cut(s) 69
LmnI GCTCC 3 cut(s) 491, 853, 1292
Lsp1109I GCAGC 6 cut(s) 101, 1087, 1090, 1105, 1118, 1225
LweI GCATC 3 cut(s) 705, 833, 874
MaeI CTAG 5 cut(s) 137, 144, 780, 981, 1040
MalI GATC 1 cut(s) 667
MboI GATC 1 cut(s) 665
MhlI GDGCHC 2 cut(s) 184, 850
MluCI AATT 5 cut(s) 551, 652, 704, 747, 1286
MlyI GAGTC 4 cut(s) 439, 627, 629, 1062
MmeI TCCRAC 2 cut(s) 601, 983
Mph1103I ATGCAT 2 cut(s) 889, 1062
MseI TTAA 5 cut(s) 168, 543, 1196, 1254, 1327
MslI CAYNNNNRTG 1 cut(s) 1233
MspA1I CMGCKG 2 cut(s) 97, 536
MspI CCGG 2 cut(s) 1267, 1313
Mva1269I GAATGC 1 cut(s) 1240
MwoI GCNNNNNNNGC 3 cut(s) 491, 1106, 1115
NdeII GATC 1 cut(s) 665
NlaIII CATG 2 cut(s) 1060, 1096
NlaIV GGNNCC 6 cut(s) 50, 199, 331, 493, 614, 849
NmeAIII GCCGAG 1 cut(s) 1069
NsiI ATGCAT 2 cut(s) 889, 1062
NspV TTCGAA 1 cut(s) 907
PciSI GCTCTTC 1 cut(s) 69
PctI GAATGC 1 cut(s) 1240
PfeI GAWTC 3 cut(s) 457, 530, 904
PkrI GCNGC 6 cut(s) 91, 1102, 1105, 1108, 1120, 1240
PleI GAGTC 4 cut(s) 439, 626, 629, 1061
PpsI GAGTC 4 cut(s) 439, 626, 629, 1061
PshAI GACNNNNGTC 1 cut(s) 80
PsiI TTATAA 1 cut(s) 236
PspFI CCCAGC 1 cut(s) 93
PspN4I GGNNCC 6 cut(s) 50, 199, 331, 493, 614, 849
PspPI GGNCC 1 cut(s) 75
PsrI GAACNNNNNNTAC 2 cut(s) 780, 812
PstI CTGCAG 2 cut(s) 1108, 1243
PvuII CAGCTG 2 cut(s) 97, 536
RsaI GTAC 6 cut(s) 39, 199, 331, 584, 1082, 1129
RsaNI GTAC 6 cut(s) 38, 198, 330, 583, 1081, 1128
RseI CAYNNNNRTG 1 cut(s) 1233
SapI GCTCTTC 1 cut(s) 69
SaqAI TTAA 5 cut(s) 168, 543, 1196, 1254, 1327
SatI GCNGC 6 cut(s) 90, 1101, 1104, 1107, 1119, 1239
Sau3AI GATC 1 cut(s) 665
Sau96I GGNCC 1 cut(s) 75
SchI GAGTC 4 cut(s) 439, 627, 629, 1062
SduI GDGCHC 2 cut(s) 184, 850
SfaNI GCATC 3 cut(s) 705, 833, 874
SfcI CTRYAG 3 cut(s) 1104, 1239, 1296
SfuI TTCGAA 1 cut(s) 907
SinI GGWCC 1 cut(s) 75
SmiMI CAYNNNNRTG 1 cut(s) 1233
Sse9I AATT 5 cut(s) 551, 652, 704, 747, 1286
SspMI CTAG 5 cut(s) 137, 144, 780, 981, 1040
StyI CCWWGG 1 cut(s) 779
TaaI ACNGT 3 cut(s) 739, 955, 1194
TaqI TCGA 5 cut(s) 84, 455, 469, 907, 1232
TasI AATT 5 cut(s) 551, 652, 704, 747, 1286
TatI WGTACW 1 cut(s) 582
TfiI GAWTC 3 cut(s) 457, 530, 904
Tru1I TTAA 5 cut(s) 168, 543, 1196, 1254, 1327
Tru9I TTAA 5 cut(s) 168, 543, 1196, 1254, 1327
TscAI CASTG 4 cut(s) 138, 742, 771, 1180
TseI GCWGC 6 cut(s) 89, 1100, 1103, 1106, 1118, 1238
TspDTI ATGAA 6 cut(s) 234, 261, 366, 393, 564, 1034
TspRI CASTG 4 cut(s) 138, 742, 771, 1180
VpaK11BI GGWCC 1 cut(s) 75
XapI RAATTY 2 cut(s) 704, 1286
XmaJI CCTAGG 1 cut(s) 779
XmiI GTMKAC 1 cut(s) 1263
XspI CTAG 5 cut(s) 137, 144, 780, 981, 1040
Zsp2I ATGCAT 2 cut(s) 889, 1062
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.