RLG00000028417

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001255
Physical Location & Seq
Reverse (-)
22541802 .. 22544237
2436 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028417

Sequence Viewer

Length: 828 bp
ATGTATTTGCTCATGCTTGTTTTACTTGAAGGGAATGGCAAAGTCCAAGGAGAAGCACCAAGAAGGAACCAGCGAGTATCTCTTGAAGACAGGACCAACTTTGAGGCAGGTCAGGTCAAAATCGAAAGGAAGATTACTCGCCACATTACAAGGAGTTTTCATGCCCAGCTGTTGGCAAATGCACAGAAGAACAATGGGAACCCGGTACTAGTGCCAGGTGTTGTAGACAAGGCAGCTAAGAATAGAAATGATGCCCCTGCAAAGAAGGTTACCAAGTCAAGACTCACTTCGATTCTAACAGCTCGAAGCAAGGCTATGGCTTGTGGAGACACTAACAAACTAAAAGAGCAGATTGTGGATTTTGACACAGCTGATGTCAATGATGAACTAGCAGTTGTTGAATATGTCGATGAATTGTACAAGTTCTTCAAACTTGAAGAGGATGACTGCCGAGTTGGAGATTACATGGATACACAGCCAGATATCAATTCAAAGATGAGGTCTATCCTCATAGACTGGTTGATAGATGTCCACAGGAAATTTGAACTGATGCCTGAAACATTCTACCTTACTGTGAATATAATTGACCGATTCCTTTCAAGGAGGATGGTAACTAGGAGGGAACTTCAGCTAGTCGGCATCAGTTCCATGGTGATAGCATCAAAGTATGAGGAAGTTTGGGCTCCACAGGCAGGTGCCAAAGTAAATATGAGTGCTGGTGGAGCGACCCCTTTACACATCGCTGCTGACATTGAGAACTTGGAGATTATAAAATGTTTGTTAAAAGCTGGAGCTGATCCCAGTGTAACTGATGAGGTGAGGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

276

Amino Acids

30.96

Weight (kDa)

6.92

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 140 - 239 3.5e-35 Cyclin, N-terminal domain
Ank PF00023 241 - 271 1.7e-07 Ankyrin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 770
AarI CACCTGC 1 cut(s) 683
Acc36I ACCTGC 2 cut(s) 98, 683
AccB1I GGYRCC 1 cut(s) 695
AccB7I CCANNNNNTGG 1 cut(s) 172
AccI GTMKAC 1 cut(s) 225
AclWI GGATC 1 cut(s) 791
AcsI RAATTY 1 cut(s) 539
AcuI CTGAAG 1 cut(s) 611
AfaI GTAC 2 cut(s) 207, 419
AfiI CCNNNNNNNGG 2 cut(s) 172, 692
AgsI TTSAA 8 cut(s) 29, 86, 401, 430, 437, 492, 545, 600
AhlI ACTAGT 1 cut(s) 208
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 7 cut(s) 169, 236, 302, 371, 631, 788, 794
AluI AGCT 7 cut(s) 169, 236, 302, 371, 631, 788, 794
Alw26I GTCTC 1 cut(s) 321
AlwI GGATC 1 cut(s) 791
ApeKI GCWGC 2 cut(s) 233, 743
ApoI RAATTY 1 cut(s) 539
ArsI GACNNNNNNTTYG 2 cut(s) 485, 517
AspS9I GGNCC 1 cut(s) 93
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 664
AvaII GGWCC 1 cut(s) 93
BanI GGYRCC 1 cut(s) 695
BanII GRGCYC 1 cut(s) 685
BarI GAAGNNNNNNTAC 2 cut(s) 410, 442
BbsI GAAGAC 1 cut(s) 93
BbvI GCAGC 2 cut(s) 245, 730
BccI CCATC 1 cut(s) 601
BciT130I CCWGG 1 cut(s) 216
BciVI GTATCC 1 cut(s) 463
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 321
BcuI ACTAGT 1 cut(s) 208
BfaI CTAG 4 cut(s) 209, 389, 615, 632
BfuAI ACCTGC 2 cut(s) 98, 683
BfuI GTATCC 1 cut(s) 463
BisI GCNGC 2 cut(s) 234, 744
BlsI GCNGC 2 cut(s) 235, 745
Bme1390I CCNGG 2 cut(s) 203, 216
Bme18I GGWCC 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 93
BmiI GGNNCC 4 cut(s) 68, 200, 684, 697
BmrFI CCNGG 2 cut(s) 203, 216
BmrI ACTGGG 1 cut(s) 795
BmsI GCATC 4 cut(s) 241, 540, 648, 668
BmuI ACTGGG 1 cut(s) 795
BpiI GAAGAC 1 cut(s) 93
BpmI CTGGAG 1 cut(s) 810
BpuMI CCSGG 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 46, 648
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 692
Bse1I ACTGG 2 cut(s) 521, 801
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 2 cut(s) 46, 648
BseGI GGATG 2 cut(s) 448, 612
BseLI CCNNNNNNNGG 2 cut(s) 172, 692
BseNI ACTGG 2 cut(s) 521, 801
BseXI GCAGC 2 cut(s) 245, 730
BseYI CCCAGC 1 cut(s) 165
BshNI GGYRCC 1 cut(s) 695
BsiSI CCGG 1 cut(s) 203
BslI CCNNNNNNNGG 2 cut(s) 172, 692
BsmAI GTCTC 1 cut(s) 321
Bsp1286I GDGCHC 1 cut(s) 685
Bsp1407I TGTACA 1 cut(s) 417
Bsp143I GATC 1 cut(s) 796
Bsp19I CCATGG 1 cut(s) 648
BspLI GGNNCC 4 cut(s) 68, 200, 684, 697
BspMI ACCTGC 2 cut(s) 98, 683
BspPI GGATC 1 cut(s) 791
BspT107I GGYRCC 1 cut(s) 695
BsrGI TGTACA 1 cut(s) 417
BsrI ACTGG 2 cut(s) 521, 801
BssECI CCNNGG 2 cut(s) 46, 648
BssMI GATC 1 cut(s) 796
BssT1I CCWWGG 2 cut(s) 46, 648
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 574
Bst6I CTCTTC 1 cut(s) 432
BstAUI TGTACA 1 cut(s) 417
BstDEI CTNAG 1 cut(s) 237
BstDSI CCRYGG 1 cut(s) 648
BstEII GGTNACC 1 cut(s) 268
BstF5I GGATG 2 cut(s) 448, 612
BstKTI GATC 1 cut(s) 799
BstMAI GTCTC 1 cut(s) 321
BstMBI GATC 1 cut(s) 796
BstMWI GCNNNNNNNGC 2 cut(s) 689, 722
BstNI CCWGG 1 cut(s) 216
BstPI GGTNACC 1 cut(s) 268
BstSCI CCNGG 2 cut(s) 201, 214
BstV1I GCAGC 2 cut(s) 245, 730
BstV2I GAAGAC 1 cut(s) 93
BsuI GTATCC 1 cut(s) 463
BtgI CCRYGG 1 cut(s) 648
BtgZI GCGATG 1 cut(s) 724
BtsCI GGATG 2 cut(s) 448, 612
BtsIMutI CAGTG 1 cut(s) 808
BveI ACCTGC 2 cut(s) 98, 683
Cfr13I GGNCC 1 cut(s) 93
Csp6I GTAC 2 cut(s) 206, 418
CviAII CATG 4 cut(s) 13, 161, 466, 649
CviQI GTAC 2 cut(s) 206, 418
DdeI CTNAG 1 cut(s) 237
DpnI GATC 1 cut(s) 798
DpnII GATC 1 cut(s) 796
Eam1104I CTCTTC 1 cut(s) 432
EarI CTCTTC 1 cut(s) 432
Eco130I CCWWGG 2 cut(s) 46, 648
Eco24I GRGCYC 1 cut(s) 685
Eco32I GATATC 1 cut(s) 484
Eco47I GGWCC 1 cut(s) 93
Eco57I CTGAAG 1 cut(s) 611
Eco91I GGTNACC 1 cut(s) 268
EcoO65I GGTNACC 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 214
EcoRV GATATC 1 cut(s) 484
EcoT14I CCWWGG 2 cut(s) 46, 648
EcoT38I GRGCYC 1 cut(s) 685
ErhI CCWWGG 2 cut(s) 46, 648
FaeI CATG 4 cut(s) 16, 164, 469, 652
FalI AAGNNNNNCTT 2 cut(s) 271, 303
FatI CATG 4 cut(s) 12, 160, 465, 648
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 2 cut(s) 234, 744
FokI GGATG 2 cut(s) 455, 619
FriOI GRGCYC 1 cut(s) 685
Fsp4HI GCNGC 2 cut(s) 234, 744
FspBI CTAG 4 cut(s) 209, 389, 615, 632
GluI GCNGC 2 cut(s) 234, 744
GsaI CCCAGC 1 cut(s) 169
GsuI CTGGAG 1 cut(s) 810
HapII CCGG 1 cut(s) 203
Hin1II CATG 4 cut(s) 16, 164, 469, 652
HinfI GANTC 3 cut(s) 282, 292, 591
HpaII CCGG 1 cut(s) 203
HphI GGTGA 1 cut(s) 664
Hpy166II GTNNAC 2 cut(s) 226, 532
Hpy188III TCNNGA 2 cut(s) 83, 279
Hpy8I GTNNAC 2 cut(s) 226, 532
HpyAV CCTTC 3 cut(s) 23, 57, 259
HpyCH4III ACNGT 1 cut(s) 574
HpyCH4V TGCA 2 cut(s) 182, 260
HpyF10VI GCNNNNNNNGC 2 cut(s) 689, 722
HpyF3I CTNAG 1 cut(s) 237
Hsp92II CATG 4 cut(s) 16, 164, 469, 652
Kzo9I GATC 1 cut(s) 796
LmnI GCTCC 3 cut(s) 688, 722, 791
Lsp1109I GCAGC 2 cut(s) 245, 730
LweI GCATC 4 cut(s) 241, 540, 648, 668
MaeI CTAG 4 cut(s) 209, 389, 615, 632
MaeIII GTNAC 3 cut(s) 268, 610, 805
MalI GATC 1 cut(s) 798
MboI GATC 1 cut(s) 796
MboII GAAGA 5 cut(s) 98, 142, 199, 418, 449
MhlI GDGCHC 1 cut(s) 685
MluCI AATT 4 cut(s) 413, 487, 539, 582
MlyI GAGTC 1 cut(s) 276
MmeI TCCRAC 1 cut(s) 436
MnlI CCTC 9 cut(s) 97, 433, 492, 518, 597, 612, 664, 808, 813
MseI TTAA 1 cut(s) 782
MspA1I CMGCKG 2 cut(s) 169, 371
MspI CCGG 1 cut(s) 203
MspR9I CCNGG 2 cut(s) 203, 216
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 2 cut(s) 689, 722
NciI CCSGG 1 cut(s) 203
NcoI CCATGG 1 cut(s) 648
NdeII GATC 1 cut(s) 796
NlaIII CATG 4 cut(s) 16, 164, 469, 652
NlaIV GGNNCC 4 cut(s) 68, 200, 684, 697
NmeAIII GCCGAG 1 cut(s) 476
PaqCI CACCTGC 1 cut(s) 683
PfeI GAWTC 2 cut(s) 292, 591
PflMI CCANNNNNTGG 1 cut(s) 172
PkrI GCNGC 2 cut(s) 235, 745
PleI GAGTC 1 cut(s) 276
PpsI GAGTC 1 cut(s) 276
PsiI TTATAA 1 cut(s) 770
Psp6I CCWGG 1 cut(s) 214
PspEI GGTNACC 1 cut(s) 268
PspFI CCCAGC 1 cut(s) 165
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 4 cut(s) 68, 200, 684, 697
PspPI GGNCC 1 cut(s) 93
PvuII CAGCTG 2 cut(s) 169, 371
RsaI GTAC 2 cut(s) 207, 419
RsaNI GTAC 2 cut(s) 206, 418
SaqAI TTAA 1 cut(s) 782
SatI GCNGC 2 cut(s) 234, 744
Sau3AI GATC 1 cut(s) 796
Sau96I GGNCC 1 cut(s) 93
SchI GAGTC 1 cut(s) 276
ScrFI CCNGG 2 cut(s) 203, 216
SduI GDGCHC 1 cut(s) 685
SfaNI GCATC 4 cut(s) 241, 540, 648, 668
SinI GGWCC 1 cut(s) 93
SpeI ACTAGT 1 cut(s) 208
Sse9I AATT 4 cut(s) 413, 487, 539, 582
SspMI CTAG 4 cut(s) 209, 389, 615, 632
StyD4I CCNGG 2 cut(s) 201, 214
StyI CCWWGG 2 cut(s) 46, 648
TaaI ACNGT 1 cut(s) 574
TaqI TCGA 4 cut(s) 123, 290, 304, 408
TaqII GACCGA 1 cut(s) 603
TasI AATT 4 cut(s) 413, 487, 539, 582
TatI WGTACW 1 cut(s) 417
TfiI GAWTC 2 cut(s) 292, 591
Tru1I TTAA 1 cut(s) 782
Tru9I TTAA 1 cut(s) 782
TscAI CASTG 1 cut(s) 808
TseI GCWGC 2 cut(s) 233, 743
TspDTI ATGAA 3 cut(s) 149, 399, 426
TspRI CASTG 1 cut(s) 808
Van91I CCANNNNNTGG 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 93
XapI RAATTY 1 cut(s) 539
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 4 cut(s) 209, 389, 615, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.