Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001255

Physical Location & Seq

Genomic Coordinates Reverse (-)

83422190 .. 83423580

Gene Structure 1391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35210

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGCTTTTAATCAAGGCTTTAGATTGTCCAAGTCAGAAAGATGGAGCACGACTTCAGATGAGACTATCCTACAGTCCGGTTGTGAATTTATTTCTCTTTCTTGTTCAGTGGACGGATTGCCAGCTTGCTAGGGCCCTTGGCTTTCTTAGAATTCTTATACATGTGGGTATCACAGATTTGGAGGACAGGAAACAAATAGAGGTTTGTACTGTCAGATTGAGAAGAAAGGGTGAGGTGGAGAGTGGAAAGCTCTCCCCATCCATGATAGCTGCTGCAGCCGTCTATGCTGCCCATTGTACTCTCAACAAGATGCCTTTCTGGACTGACACTTTGAAGCACCATACTGGTTACTCTGAAGAACAGCTAAGGGAATGTGCCAAGGTTTTAGTTGGCTTTCACTTGAAGGCTGGAGAAAGTGATCTTAAAGCTCTTCTCAAGAAATACACAAAACCAGAATATGGTGCTGTTGCTCGTTGCAGTCCAGCTAAAATTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

165

Amino Acids

18.51

Weight (kDa)

9.21

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_C	PF02984	83 - 161	4.6e-24	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27185 AT5G01800
fragaria_vesca	FvH4_3g43340 FvH4_3g43340 FvH4_3g43340 FvH4_3g43340 FvH4_3g43340 FvH4_3g43460 FvH4_3g43460 FvH4_3g43460
malus_domestica	MD03G1022700.v1.1 MD03G1022800.v1.1 MD11G1027000.v1.1
prunus_persica	Prupe.6G021200_v2.0.a1 Prupe.6G021300_v2.0.a1
pyrus_communis	pycom03g01920 pycom11g02060
rosa_chinensis	RchiOBHm_Chr5g0077531 RchiOBHm_Chr5g0077551 RchiOBHm_Chr5g0077871 RchiOBHm_Chr7g0239321
rosa_laevigata	RLG00000000763 RLG00000006532 RLG00000013630 RLG00000017586 RLG00000022210 RLG00000028417 RLG00000036703 RLG00000036721
rosa_multiflora	Rmu_sc0001018.1_g000034 Rmu_sc0003058.1_g000003 Rmu_sc0004277.1_g000046 Rmu_sc0008456.1_g000002 Rmu_sc0031428.1_g000001 Rmu_ssc0000186.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004310 Rroxscaffold_1G00004440 Rroxscaffold_1G00004450 Rroxscaffold_3G00221010
rosa_rugosa	Rorug05G0455500 Rorug05G0455600 Rorug05G0456800.1 Rorug07G0327300 Rorug07G0327400
rosa_samantha	Rh5AG510200 Rh5AG511200 Rh5BG531900 Rh5BG533900 Rh5DG543900 Rh5DG544000 Rh5DG545300 Rh7AG480700
rosa_wichuraiana	Rw5G047290 Rw5G047440 Rw7G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	458
AcsI	RAATTY	3 cut(s)	85, 150, 489
AcuI	CTGAAG	2 cut(s)	38, 375
AfaI	GTAC	2 cut(s)	208, 298
AfiI	CCNNNNNNNGG	1 cut(s)	458
AflIII	ACRYGT	1 cut(s)	160
AgsI	TTSAA	2 cut(s)	334, 403
AluBI	AGCT	6 cut(s)	124, 250, 269, 364, 428, 485
AluI	AGCT	6 cut(s)	124, 250, 269, 364, 428, 485
Alw21I	GWGCWC	1 cut(s)	49
Alw26I	GTCTC	1 cut(s)	55
AoxI	GGCC	1 cut(s)	132
ApaI	GGGCCC	1 cut(s)	136
ApeKI	GCWGC	4 cut(s)	269, 272, 275, 287
ApoI	RAATTY	3 cut(s)	85, 150, 489
ArsI	GACNNNNNNTTYG	2 cut(s)	313, 345
AspS9I	GGNCC	2 cut(s)	132, 133
AsuHPI	GGTGA	1 cut(s)	242
BaeGI	GKGCMC	1 cut(s)	136
BanII	GRGCYC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	49
BbvI	GCAGC	4 cut(s)	256, 259, 274, 287
BccI	CCATC	2 cut(s)	35, 265
BceAI	ACGGC	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	1 cut(s)	129
BfmI	CTRYAG	2 cut(s)	70, 273
BisI	GCNGC	4 cut(s)	270, 273, 276, 288
BlsI	GCNGC	4 cut(s)	271, 274, 277, 289
BmgT120I	GGNCC	2 cut(s)	132, 133
BmiI	GGNNCC	1 cut(s)	134
BmsI	GCATC	1 cut(s)	300
BpmI	CTGGAG	1 cut(s)	429
Bpu10I	CCTNAGC	1 cut(s)	365
BpuEI	CTTGAG	1 cut(s)	419
BsaJI	CCNNGG	2 cut(s)	136, 378
BsaWI	WCCGGW	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	1 cut(s)	458
Bse1I	ACTGG	1 cut(s)	349
BseDI	CCNNGG	2 cut(s)	136, 378
BseGI	GGATG	1 cut(s)	257
BseLI	CCNNNNNNNGG	1 cut(s)	458
BseNI	ACTGG	1 cut(s)	349
BseSI	GKGCMC	1 cut(s)	136
BseXI	GCAGC	4 cut(s)	256, 259, 274, 287
BshFI	GGCC	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	458
BsmAI	GTCTC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	134
Bsp120I	GGGCCC	1 cut(s)	132
Bsp1286I	GDGCHC	2 cut(s)	49, 136
Bsp143I	GATC	1 cut(s)	418
BspANI	GGCC	1 cut(s)	134
BspLI	GGNNCC	1 cut(s)	134
BspMAI	CTGCAG	1 cut(s)	277
BspQI	GCTCTTC	1 cut(s)	435
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	2 cut(s)	136, 378
BssMI	GATC	1 cut(s)	418
BssT1I	CCWWGG	2 cut(s)	136, 378
Bst4CI	ACNGT	2 cut(s)	74, 211
Bst6I	CTCTTC	1 cut(s)	435
BstC8I	GCNNGC	2 cut(s)	122, 126
BstDEI	CTNAG	2 cut(s)	146, 365
BstF5I	GGATG	1 cut(s)	257
BstKTI	GATC	1 cut(s)	421
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	418
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 284
BstNSI	RCATGY	1 cut(s)	164
BstSFI	CTRYAG	2 cut(s)	70, 273
BstSLI	GKGCMC	1 cut(s)	136
BstV1I	GCAGC	4 cut(s)	256, 259, 274, 287
BsuRI	GGCC	1 cut(s)	134
BtsCI	GGATG	1 cut(s)	257
BtsIMutI	CAGTG	1 cut(s)	113
Cac8I	GCNNGC	2 cut(s)	122, 126
Cfr13I	GGNCC	2 cut(s)	132, 133
Csp6I	GTAC	2 cut(s)	207, 297
CviAII	CATG	2 cut(s)	161, 262
CviQI	GTAC	2 cut(s)	207, 297
DdeI	CTNAG	2 cut(s)	146, 365
DpnI	GATC	1 cut(s)	420
DpnII	GATC	1 cut(s)	418
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
Eco130I	CCWWGG	2 cut(s)	136, 378
Eco24I	GRGCYC	1 cut(s)	136
Eco57I	CTGAAG	2 cut(s)	38, 375
EcoO109I	RGGNCCY	2 cut(s)	132, 133
EcoRI	GAATTC	1 cut(s)	150
EcoT14I	CCWWGG	2 cut(s)	136, 378
EcoT38I	GRGCYC	1 cut(s)	136
ErhI	CCWWGG	2 cut(s)	136, 378
FaeI	CATG	2 cut(s)	164, 265
FaiI	YATR	6 cut(s)	158, 162, 263, 285, 342, 459
FatI	CATG	2 cut(s)	160, 261
Fnu4HI	GCNGC	4 cut(s)	270, 273, 276, 288
FokI	GGATG	1 cut(s)	244
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	4 cut(s)	270, 273, 276, 288
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	4 cut(s)	270, 273, 276, 288
GsuI	CTGGAG	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	134
HapII	CCGG	1 cut(s)	77
Hin1II	CATG	2 cut(s)	164, 265
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	4 cut(s)	36, 57, 215, 355
Hpy188III	TCNNGA	2 cut(s)	319, 436
Hpy8I	GTNNAC	1 cut(s)	111
HpyAV	CCTTC	1 cut(s)	397
HpyCH4III	ACNGT	2 cut(s)	74, 211
HpyCH4V	TGCA	2 cut(s)	275, 477
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 284
HpyF3I	CTNAG	2 cut(s)	146, 365
Hsp92II	CATG	2 cut(s)	164, 265
Kzo9I	GATC	1 cut(s)	418
LguI	GCTCTTC	1 cut(s)	435
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	7 cut(s)	90, 134, 172, 304, 330, 393, 465
Lsp1109I	GCAGC	4 cut(s)	256, 259, 274, 287
LweI	GCATC	1 cut(s)	300
MaeI	CTAG	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	347
MalI	GATC	1 cut(s)	420
MboI	GATC	1 cut(s)	418
MboII	GAAGA	3 cut(s)	234, 368, 422
MhlI	GDGCHC	2 cut(s)	49, 136
MluCI	AATT	3 cut(s)	85, 150, 489
MnlI	CCTC	3 cut(s)	175, 193, 226
MseI	TTAA	2 cut(s)	8, 423
MspI	CCGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	275, 284
NdeII	GATC	1 cut(s)	418
NlaIII	CATG	2 cut(s)	164, 265
NlaIV	GGNNCC	1 cut(s)	134
NspI	RCATGY	1 cut(s)	164
PciI	ACATGT	1 cut(s)	160
PciSI	GCTCTTC	1 cut(s)	435
PflMI	CCANNNNNTGG	1 cut(s)	458
PkrI	GCNGC	4 cut(s)	271, 274, 277, 289
PscI	ACATGT	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	134
PspOMI	GGGCCC	1 cut(s)	132
PspPI	GGNCC	2 cut(s)	132, 133
PstI	CTGCAG	1 cut(s)	277
RsaI	GTAC	2 cut(s)	208, 298
RsaNI	GTAC	2 cut(s)	207, 297
SapI	GCTCTTC	1 cut(s)	435
SaqAI	TTAA	2 cut(s)	8, 423
SatI	GCNGC	4 cut(s)	270, 273, 276, 288
Sau3AI	GATC	1 cut(s)	418
Sau96I	GGNCC	2 cut(s)	132, 133
SduI	GDGCHC	2 cut(s)	49, 136
SetI	ASST	9 cut(s)	126, 204, 237, 252, 271, 366, 384, 430, 487
SfaNI	GCATC	1 cut(s)	300
SfcI	CTRYAG	2 cut(s)	70, 273
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	3 cut(s)	85, 150, 489
SspMI	CTAG	1 cut(s)	129
StyI	CCWWGG	2 cut(s)	136, 378
TaaI	ACNGT	2 cut(s)	74, 211
TasI	AATT	3 cut(s)	85, 150, 489
TatI	WGTACW	2 cut(s)	206, 296
Tru1I	TTAA	2 cut(s)	8, 423
Tru9I	TTAA	2 cut(s)	8, 423
TscAI	CASTG	1 cut(s)	113
TseI	GCWGC	4 cut(s)	269, 272, 275, 287
TspGWI	ACGGA	1 cut(s)	128
TspRI	CASTG	1 cut(s)	113
Van91I	CCANNNNNTGG	1 cut(s)	458
XapI	RAATTY	3 cut(s)	85, 150, 489
XceI	RCATGY	1 cut(s)	164
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.