Rroxscaffold_1G00004310

cell division

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001255
Physical Location & Seq
Reverse (-)
6009725 .. 6012757
3033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00004310.1

Sequence Viewer

Length: 1158 bp
ATGTTGAGGCAGGTCAGGTCGAAATCAAAGGAAGCCCCTGTTCAGATCAGTCGCCCCATGACTAGGAGATTTCATGCCGAACTGTTAGCAAACAATGCACAGAAGAACAATGCGAACCAAGTGCTCGGTGTTGTAGACAAGGCAGCTCAGAATAGAAAATGCGCCCCTACAAAGAATGTTACTGAGAAGGTAACTGATGAAGAGAAGGAGAAGCCTGTCAATAGAAGCAAGCCAGTACAAGGTCCAAGGAAGGAAGTCAAGGCTTTCACTTCAACTCTAACAGCTCGAAGCAAGGCTATGGCTTGTGGAGTCACCAACAAGCCAAAAGAGCAGATTGTGGATTTTGACGCAGCTGATGTCAATGATGAACTGGCAGTTGTTGAGTACGTTGATGAATTGTACAAGTTCTACAAACTTGATGAGGATGGCAGCCGAGTTGGAGATTACTTGGACAAACAGCCAGATCTTAATTCGAAGATGAGGTCTATCCTTGTAGACTGGCTGATAGATGTTCACAGGAAATTTGAACTAACGCCCGAAACATTCTACCTCACTGTGAATATAATTGACCGATTCCTTTCAAGGAGGATGGTAACTAGGAGGGAACTTCAGCTAGTTGGCATTAGTTCCATGGTGATAGCATCCAAGTATGAGGAAGTTTGGGCTCCACAGGTTGAGGATTTTGTGTGCTTATCAGACTATACATATACCGGCAGTCAGATTTGTGCAATGGAGAAAGCAATCTTGGAGAAGCTGGGGTGGTATTTGACAGTTCCTACACCTTATGTCTTTCTTGCTAGATACATCAAAGCATCCATTTCGCCTGATGATGAGATGACGCATATGGTTTTCTTTCTAGCTGAACTTGGAGCCTTGGATTATCGAACAACCATACGGTACTCCCCATCCATGATAGCTGCTGCAGCCGTCTATGCTGCCCGCTGTACCCTCAACAAGAAGAGTTTCTGGACTGAAACTTTGAAGCACCACACTGGCTACTCTGAAGAACAGTTGAGGGAATGTGCCAAGGTCTTGGTTGGCTTTCACATGAATGCTGCTGAAAGTGATCTTAAAGCTGTTTATCGGAAATACTCAAAACCTGAATATGGTGCTGTTGCTGGTCTTACTCCTGCCAGAAGTTTTCAGTCCTCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko04110 ko04114 ko04115 ko04218 ko04914 ko05166 map04068 map04110 map04114 map04115 map04218 map04914 map05166
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

385

Amino Acids

43.76

Weight (kDa)

8.78

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 134 - 257 4.2e-46 Cyclin, N-terminal domain
Cyclin_C PF02984 259 - 377 2.3e-40 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 135, 495
AciI CCGC 1 cut(s) 940
AcsI RAATTY 1 cut(s) 521
AcuI CTGAAG 2 cut(s) 593, 1023
AfaI GTAC 5 cut(s) 237, 386, 401, 899, 946
AfiI CCNNNNNNNGG 3 cut(s) 63, 239, 1106
AgsI TTSAA 4 cut(s) 273, 527, 582, 982
AjuI GAANNNNNNNTTGG 2 cut(s) 728, 760
AluBI AGCT 8 cut(s) 146, 284, 353, 613, 754, 860, 917, 1076
AluI AGCT 8 cut(s) 146, 284, 353, 613, 754, 860, 917, 1076
Alw21I GWGCWC 1 cut(s) 126
ApeKI GCWGC 8 cut(s) 143, 350, 429, 917, 920, 923, 935, 1055
ApoI RAATTY 1 cut(s) 521
ArsI GACNNNNNNTTYG 4 cut(s) 467, 499, 961, 993
Asp700I GAANNNNTTC 1 cut(s) 962
AspLEI GCGC 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 2 cut(s) 304, 646
AsuII TTCGAA 1 cut(s) 473
AvaII GGWCC 1 cut(s) 242
BanII GRGCYC 1 cut(s) 667
Bbv12I GWGCWC 1 cut(s) 126
BbvI GCAGC 8 cut(s) 155, 362, 441, 904, 907, 922, 935, 1042
BccI CCATC 3 cut(s) 419, 583, 913
BceAI ACGGC 1 cut(s) 911
BcgI CGANNNNNNTGC 4 cut(s) 103, 137, 801, 835
BfaI CTAG 5 cut(s) 63, 597, 614, 798, 857
BfmI CTRYAG 1 cut(s) 921
BglII AGATCT 1 cut(s) 463
BisI GCNGC 8 cut(s) 144, 351, 430, 918, 921, 924, 936, 1056
BlsI GCNGC 8 cut(s) 145, 352, 431, 919, 922, 925, 937, 1057
Bme18I GGWCC 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 2 cut(s) 666, 871
BmsI GCATC 2 cut(s) 650, 821
Bpu14I TTCGAA 1 cut(s) 473
BsaJI CCNNGG 4 cut(s) 245, 630, 873, 1026
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 239, 1106
Bse118I RCCGGY 1 cut(s) 710
Bse1I ACTGG 4 cut(s) 233, 375, 503, 997
Bse3DI GCAATG 1 cut(s) 735
BseDI CCNNGG 4 cut(s) 245, 630, 873, 1026
BseGI GGATG 5 cut(s) 430, 594, 641, 812, 905
BseLI CCNNNNNNNGG 3 cut(s) 63, 239, 1106
BseMI GCAATG 1 cut(s) 735
BseMII CTCAG 2 cut(s) 161, 174
BseNI ACTGG 4 cut(s) 233, 375, 503, 997
BseXI GCAGC 8 cut(s) 155, 362, 441, 904, 907, 922, 935, 1042
BseYI CCCAGC 1 cut(s) 754
BsiHKAI GWGCWC 1 cut(s) 126
BsiSI CCGG 1 cut(s) 711
BslI CCNNNNNNNGG 3 cut(s) 63, 239, 1106
BsmI GAATGC 1 cut(s) 1057
Bsp119I TTCGAA 1 cut(s) 473
Bsp1286I GDGCHC 2 cut(s) 126, 667
Bsp1407I TGTACA 1 cut(s) 399
Bsp143I GATC 3 cut(s) 45, 463, 1066
Bsp19I CCATGG 1 cut(s) 630
BspACI CCGC 1 cut(s) 940
BspCNI CTCAG 2 cut(s) 160, 175
BspHI TCATGA 1 cut(s) 1154
BspLI GGNNCC 2 cut(s) 666, 871
BspMAI CTGCAG 1 cut(s) 925
BspT104I TTCGAA 1 cut(s) 473
BsrDI GCAATG 1 cut(s) 735
BsrFI RCCGGY 1 cut(s) 710
BsrGI TGTACA 1 cut(s) 399
BsrI ACTGG 4 cut(s) 233, 375, 503, 997
BssAI RCCGGY 1 cut(s) 710
BssECI CCNNGG 4 cut(s) 245, 630, 873, 1026
BssMI GATC 3 cut(s) 45, 463, 1066
BssT1I CCWWGG 4 cut(s) 245, 630, 873, 1026
Bst4CI ACNGT 5 cut(s) 84, 556, 772, 897, 1011
Bst6I CTCTTC 2 cut(s) 195, 953
BstAPI GCANNNNNTGC 1 cut(s) 95
BstAUI TGTACA 1 cut(s) 399
BstBI TTCGAA 1 cut(s) 473
BstC8I GCNNGC 2 cut(s) 230, 940
BstDEI CTNAG 2 cut(s) 147, 183
BstDSI CCRYGG 1 cut(s) 630
BstF5I GGATG 5 cut(s) 430, 594, 641, 812, 905
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 3 cut(s) 48, 466, 1069
BstMBI GATC 3 cut(s) 45, 463, 1066
BstMWI GCNNNNNNNGC 4 cut(s) 95, 328, 923, 932
BstSFI CTRYAG 1 cut(s) 921
BstV1I GCAGC 8 cut(s) 155, 362, 441, 904, 907, 922, 935, 1042
BstX2I RGATCY 1 cut(s) 463
BstXI CCANNNNNNTGG 1 cut(s) 1033
BstYI RGATCY 1 cut(s) 463
BtgI CCRYGG 1 cut(s) 630
BtsCI GGATG 5 cut(s) 430, 594, 641, 812, 905
BtsIMutI CAGTG 2 cut(s) 552, 990
Cac8I GCNNGC 2 cut(s) 230, 940
CciI TCATGA 1 cut(s) 1154
CfoI GCGC 1 cut(s) 164
Cfr10I RCCGGY 1 cut(s) 710
Cfr13I GGNCC 1 cut(s) 242
CseI GACGC 2 cut(s) 356, 847
Csp6I GTAC 5 cut(s) 236, 385, 400, 898, 945
CviAII CATG 6 cut(s) 58, 74, 631, 910, 1048, 1155
CviQI GTAC 5 cut(s) 236, 385, 400, 898, 945
DdeI CTNAG 2 cut(s) 147, 183
DpnI GATC 3 cut(s) 47, 465, 1068
DpnII GATC 3 cut(s) 45, 463, 1066
Eam1104I CTCTTC 2 cut(s) 195, 953
EarI CTCTTC 2 cut(s) 195, 953
Eco130I CCWWGG 4 cut(s) 245, 630, 873, 1026
Eco24I GRGCYC 1 cut(s) 667
Eco47I GGWCC 1 cut(s) 242
Eco57I CTGAAG 2 cut(s) 593, 1023
EcoT14I CCWWGG 4 cut(s) 245, 630, 873, 1026
EcoT38I GRGCYC 1 cut(s) 667
ErhI CCWWGG 4 cut(s) 245, 630, 873, 1026
FaeI CATG 6 cut(s) 61, 77, 634, 913, 1051, 1158
FatI CATG 6 cut(s) 57, 73, 630, 909, 1047, 1154
FauI CCCGC 1 cut(s) 947
FauNDI CATATG 1 cut(s) 843
FblI GTMKAC 2 cut(s) 135, 495
Fnu4HI GCNGC 8 cut(s) 144, 351, 430, 918, 921, 924, 936, 1056
FokI GGATG 5 cut(s) 437, 601, 628, 799, 892
FriOI GRGCYC 1 cut(s) 667
Fsp4HI GCNGC 8 cut(s) 144, 351, 430, 918, 921, 924, 936, 1056
FspBI CTAG 5 cut(s) 63, 597, 614, 798, 857
GlaI GCGC 1 cut(s) 163
GluI GCNGC 8 cut(s) 144, 351, 430, 918, 921, 924, 936, 1056
GsaI CCCAGC 1 cut(s) 758
HapII CCGG 1 cut(s) 711
HgaI GACGC 2 cut(s) 356, 847
HhaI GCGC 1 cut(s) 164
Hin1II CATG 6 cut(s) 61, 77, 634, 913, 1051, 1158
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HinfI GANTC 2 cut(s) 309, 573
HpaII CCGG 1 cut(s) 711
HphI GGTGA 2 cut(s) 304, 646
Hpy166II GTNNAC 3 cut(s) 136, 496, 514
Hpy188I TCNGA 6 cut(s) 45, 150, 697, 720, 1003, 1086
Hpy188III TCNNGA 2 cut(s) 967, 1155
Hpy8I GTNNAC 3 cut(s) 136, 496, 514
HpyAV CCTTC 3 cut(s) 181, 199, 244
HpyCH4III ACNGT 5 cut(s) 84, 556, 772, 897, 1011
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 3 cut(s) 98, 728, 923
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 328, 923, 932
HpyF3I CTNAG 2 cut(s) 147, 183
HpySE526I ACGT 1 cut(s) 387
Hsp92II CATG 6 cut(s) 61, 77, 634, 913, 1051, 1158
HspAI GCGC 1 cut(s) 162
Kzo9I GATC 3 cut(s) 45, 463, 1066
LmnI GCTCC 2 cut(s) 670, 869
Lsp1109I GCAGC 8 cut(s) 155, 362, 441, 904, 907, 922, 935, 1042
LweI GCATC 2 cut(s) 650, 821
MaeI CTAG 5 cut(s) 63, 597, 614, 798, 857
MaeII ACGT 1 cut(s) 387
MaeIII GTNAC 4 cut(s) 178, 190, 310, 592
MalI GATC 3 cut(s) 47, 465, 1068
MboI GATC 3 cut(s) 45, 463, 1066
MboII GAAGA 6 cut(s) 115, 212, 487, 970, 1016, 1143
MflI RGATCY 1 cut(s) 463
MhlI GDGCHC 2 cut(s) 126, 667
MluCI AATT 4 cut(s) 395, 469, 521, 564
MlyI GAGTC 1 cut(s) 318
MmeI TCCRAC 1 cut(s) 418
MnlI CCTC 9 cut(s) 415, 474, 560, 579, 594, 646, 670, 959, 1008
MroXI GAANNNNTTC 1 cut(s) 962
MseI TTAA 2 cut(s) 468, 1071
MslI CAYNNNNRTG 1 cut(s) 1050
MspA1I CMGCKG 2 cut(s) 353, 942
MspI CCGG 1 cut(s) 711
Mva1269I GAATGC 1 cut(s) 1057
MwoI GCNNNNNNNGC 4 cut(s) 95, 328, 923, 932
NcoI CCATGG 1 cut(s) 630
NdeI CATATG 1 cut(s) 843
NdeII GATC 3 cut(s) 45, 463, 1066
NlaIII CATG 6 cut(s) 61, 77, 634, 913, 1051, 1158
NlaIV GGNNCC 2 cut(s) 666, 871
NmeAIII GCCGAG 1 cut(s) 458
NmuCI GTSAC 1 cut(s) 310
NspV TTCGAA 1 cut(s) 473
PagI TCATGA 1 cut(s) 1154
PctI GAATGC 1 cut(s) 1057
PdmI GAANNNNTTC 1 cut(s) 962
PfeI GAWTC 1 cut(s) 573
PkrI GCNGC 8 cut(s) 145, 352, 431, 919, 922, 925, 937, 1057
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
PspFI CCCAGC 1 cut(s) 754
PspN4I GGNNCC 2 cut(s) 666, 871
PspPI GGNCC 1 cut(s) 242
PstI CTGCAG 1 cut(s) 925
PsuI RGATCY 1 cut(s) 463
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 5 cut(s) 237, 386, 401, 899, 946
RsaNI GTAC 5 cut(s) 236, 385, 400, 898, 945
RseI CAYNNNNRTG 1 cut(s) 1050
SaqAI TTAA 2 cut(s) 468, 1071
SatI GCNGC 8 cut(s) 144, 351, 430, 918, 921, 924, 936, 1056
Sau3AI GATC 3 cut(s) 45, 463, 1066
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 1 cut(s) 318
SduI GDGCHC 2 cut(s) 126, 667
SfaNI GCATC 2 cut(s) 650, 821
SfcI CTRYAG 1 cut(s) 921
SfuI TTCGAA 1 cut(s) 473
SinI GGWCC 1 cut(s) 242
SmiMI CAYNNNNRTG 1 cut(s) 1050
Sse9I AATT 4 cut(s) 395, 469, 521, 564
SsiI CCGC 1 cut(s) 940
SspMI CTAG 5 cut(s) 63, 597, 614, 798, 857
StyI CCWWGG 4 cut(s) 245, 630, 873, 1026
TaaI ACNGT 5 cut(s) 84, 556, 772, 897, 1011
TaiI ACGT 1 cut(s) 390
TaqI TCGA 4 cut(s) 20, 286, 473, 883
TaqII GACCGA 1 cut(s) 585
TasI AATT 4 cut(s) 395, 469, 521, 564
TatI WGTACW 2 cut(s) 235, 399
TfiI GAWTC 1 cut(s) 573
Tru1I TTAA 2 cut(s) 468, 1071
Tru9I TTAA 2 cut(s) 468, 1071
TscAI CASTG 2 cut(s) 559, 997
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 8 cut(s) 143, 350, 429, 917, 920, 923, 935, 1055
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 6 cut(s) 62, 213, 381, 408, 1064, 1143
TspRI CASTG 2 cut(s) 559, 997
VpaK11BI GGWCC 1 cut(s) 242
XapI RAATTY 1 cut(s) 521
XmiI GTMKAC 2 cut(s) 135, 495
XmnI GAANNNNTTC 1 cut(s) 962
XspI CTAG 5 cut(s) 63, 597, 614, 798, 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.