Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001018.1

Orthogroup ID

OG0001255

Physical Location & Seq

Genomic Coordinates Reverse (-)

156317 .. 158171

Gene Structure 1855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001018.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

atgcttgttttacttgaagggaatggtaaagtccatggagaagcaccgagaaggaaccagcgagtagctcttgaagacaggaccaactttgaggcaggtcaggtcgaaattgaagggaagattactcgccgcattacaaggagttttcatgcccagctgttggcaaatgcacagaagaacaatgggaacccagtactagtgccaggtgttgtagacaaggcagctaagaatagaaatgatgcccctgcaaagaaggttaccaagaaagcagctgatgaagatgtgaatgtggttagttctgatgaagaaaaagagaagccggtcaatagaggcaagccggtacaaggttcaaggaaggaagtcaagactctcacttcgattctaacagctcgaagcaaggctatggcttgtggagacactgacaaactaaaagagcagattgtggattttgacgcagctgatgtcaatgatgaactagcagttgttgaatatgtcgatgaattgtacaagttctacaaacttgaagaggatgactgccgagttggagattacatggatacacagccagatatcaattcaaagatgaggtctatcctcatagactggttgatagatgtccacaggaaatttgaactgatgcctgaaacattctaccttactgtgaatataattgatcgattcctttcaaggaggatggtaactaggagggaacttcagctagttggcatcagttccatggtgatagcatcaaagtatgaggaagtttgggctccacaggtcaatgattttgtgtgcttatcagactatgcatatacgggcaatcaaattcgtgtaatggagaaagcaatcctgcagaagttggagtggtatttgacagttccaacaccttatgtctttcttgctagatacatcaaagcttccatttcacctgatgatgagatgaagaatatggtttactttctagccgaacttggagtcttggattatcaaacaaccattcggcactccccatccatgatagctgctgcagctgtctatgctgcccattgtactctcaacaagatgcctttctggactgaaactttgaagcaccatactggttactctgaagaacagctaagggaatgtgccaaggttttggttggctttcactcgaaggctggcgaaagtgatcttaaagctcttttcaagaaatacacaaaacctgaatatggtgctgttgctcgtcgcactccagctaaaatttgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

416

Amino Acids

47.24

Weight (kDa)

7.59

Isoelectric Point (pI)

40.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27185 AT5G01800
fragaria_vesca	FvH4_3g43340 FvH4_3g43340 FvH4_3g43340 FvH4_3g43340 FvH4_3g43340 FvH4_3g43460 FvH4_3g43460 FvH4_3g43460
malus_domestica	MD03G1022700.v1.1 MD03G1022800.v1.1 MD11G1027000.v1.1
prunus_persica	Prupe.6G021200_v2.0.a1 Prupe.6G021300_v2.0.a1
pyrus_communis	pycom03g01920 pycom11g02060
rosa_chinensis	RchiOBHm_Chr5g0077531 RchiOBHm_Chr5g0077551 RchiOBHm_Chr5g0077871 RchiOBHm_Chr7g0239321
rosa_laevigata	RLG00000000763 RLG00000006532 RLG00000013630 RLG00000017586 RLG00000022210 RLG00000028417 RLG00000036703 RLG00000036721
rosa_multiflora	Rmu_sc0001018.1_g000034 Rmu_sc0003058.1_g000003 Rmu_sc0004277.1_g000046 Rmu_sc0008456.1_g000002 Rmu_sc0031428.1_g000001 Rmu_ssc0000186.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004310 Rroxscaffold_1G00004440 Rroxscaffold_1G00004450 Rroxscaffold_3G00221010
rosa_rugosa	Rorug05G0455500 Rorug05G0455600 Rorug05G0456800.1 Rorug07G0327300 Rorug07G0327400
rosa_samantha	Rh5AG510200 Rh5AG511200 Rh5BG531900 Rh5BG533900 Rh5DG543900 Rh5DG544000 Rh5DG545300 Rh7AG480700
rosa_wichuraiana	Rw5G047290 Rw5G047440 Rw7G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	86
AccB7I	CCANNNNNTGG	1 cut(s)	160
AccI	GTMKAC	1 cut(s)	213
AciI	CCGC	1 cut(s)	130
AcsI	RAATTY	3 cut(s)	626, 825, 1242
AcuI	CTGAAG	2 cut(s)	698, 1128
AfaI	GTAC	4 cut(s)	195, 342, 506, 1051
AfiI	CCNNNNNNNGG	3 cut(s)	160, 344, 1211
AhlI	ACTAGT	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	202
Alw26I	GTCTC	1 cut(s)	408
ApeKI	GCWGC	7 cut(s)	221, 269, 455, 1022, 1025, 1028, 1040
ApoI	RAATTY	3 cut(s)	626, 825, 1242
ArsI	GACNNNNNNTTYG	8 cut(s)	358, 390, 572, 604, 960, 992, 1066, 1098
AspS9I	GGNCC	1 cut(s)	81
AsuHPI	GGTGA	2 cut(s)	751, 918
AvaII	GGWCC	1 cut(s)	81
BanII	GRGCYC	1 cut(s)	772
BbsI	GAAGAC	1 cut(s)	81
BbvI	GCAGC	7 cut(s)	233, 281, 467, 1009, 1012, 1027, 1040
BccI	CCATC	2 cut(s)	688, 1018
BciT130I	CCWGG	1 cut(s)	204
BciVI	GTATCC	1 cut(s)	550
BcoDI	GTCTC	1 cut(s)	408
BcuI	ACTAGT	1 cut(s)	196
BfaI	CTAG	6 cut(s)	197, 476, 702, 719, 903, 962
BfmI	CTRYAG	2 cut(s)	851, 1026
BfuAI	ACCTGC	1 cut(s)	86
BfuI	GTATCC	1 cut(s)	550
BisI	GCNGC	8 cut(s)	130, 222, 270, 456, 1023, 1026, 1029, 1041
BlsI	GCNGC	8 cut(s)	131, 223, 271, 457, 1024, 1027, 1030, 1042
BmcAI	AGTACT	1 cut(s)	195
Bme1390I	CCNGG	1 cut(s)	204
Bme18I	GGWCC	1 cut(s)	81
BmgT120I	GGNCC	1 cut(s)	81
BmiI	GGNNCC	3 cut(s)	56, 188, 771
BmrFI	CCNGG	1 cut(s)	204
BmrI	ACTGGG	1 cut(s)	185
BmsI	GCATC	5 cut(s)	229, 627, 735, 755, 1053
BmuI	ACTGGG	1 cut(s)	185
BpiI	GAAGAC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	1218
Bpu10I	CCTNAGC	1 cut(s)	1118
Bsa29I	ATCGAT	1 cut(s)	676
BsaJI	CCNNGG	3 cut(s)	34, 735, 1131
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 344, 1211
Bse118I	RCCGGY	2 cut(s)	319, 337
Bse1I	ACTGG	3 cut(s)	191, 608, 1102
BseBI	CCWGG	1 cut(s)	204
BseCI	ATCGAT	1 cut(s)	676
BseDI	CCNNGG	3 cut(s)	34, 735, 1131
BseGI	GGATG	3 cut(s)	535, 699, 1010
BseLI	CCNNNNNNNGG	3 cut(s)	160, 344, 1211
BseNI	ACTGG	3 cut(s)	191, 608, 1102
BseXI	GCAGC	7 cut(s)	233, 281, 467, 1009, 1012, 1027, 1040
BseYI	CCCAGC	1 cut(s)	153
BshVI	ATCGAT	1 cut(s)	676
BsiSI	CCGG	2 cut(s)	320, 338
BslI	CCNNNNNNNGG	3 cut(s)	160, 344, 1211
BsmAI	GTCTC	1 cut(s)	408
Bsp1286I	GDGCHC	1 cut(s)	772
Bsp1407I	TGTACA	1 cut(s)	504
Bsp143I	GATC	2 cut(s)	673, 1171
Bsp19I	CCATGG	2 cut(s)	34, 735
BspACI	CCGC	1 cut(s)	130
BspDI	ATCGAT	1 cut(s)	676
BspLI	GGNNCC	3 cut(s)	56, 188, 771
BspMAI	CTGCAG	2 cut(s)	855, 1030
BspMI	ACCTGC	1 cut(s)	86
BsrFI	RCCGGY	2 cut(s)	319, 337
BsrGI	TGTACA	1 cut(s)	504
BsrI	ACTGG	3 cut(s)	191, 608, 1102
BssAI	RCCGGY	2 cut(s)	319, 337
BssECI	CCNNGG	3 cut(s)	34, 735, 1131
BssMI	GATC	2 cut(s)	673, 1171
BssT1I	CCWWGG	3 cut(s)	34, 735, 1131
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	2 cut(s)	661, 877
Bst6I	CTCTTC	1 cut(s)	519
BstAUI	TGTACA	1 cut(s)	504
BstC8I	GCNNGC	2 cut(s)	335, 1162
BstDEI	CTNAG	2 cut(s)	225, 1118
BstDSI	CCRYGG	2 cut(s)	34, 735
BstEII	GGTNACC	1 cut(s)	256
BstF5I	GGATG	3 cut(s)	535, 699, 1010
BstKTI	GATC	2 cut(s)	676, 1174
BstMAI	GTCTC	1 cut(s)	408
BstMBI	GATC	2 cut(s)	673, 1171
BstMWI	GCNNNNNNNGC	2 cut(s)	1028, 1037
BstNI	CCWGG	1 cut(s)	204
BstPI	GGTNACC	1 cut(s)	256
BstSCI	CCNGG	1 cut(s)	202
BstSFI	CTRYAG	2 cut(s)	851, 1026
BstV1I	GCAGC	7 cut(s)	233, 281, 467, 1009, 1012, 1027, 1040
BstV2I	GAAGAC	1 cut(s)	81
BstXI	CCANNNNNNTGG	1 cut(s)	1138
Bsu15I	ATCGAT	1 cut(s)	676
BsuI	GTATCC	1 cut(s)	550
BsuTUI	ATCGAT	1 cut(s)	676
BtgI	CCRYGG	2 cut(s)	34, 735
BtsCI	GGATG	3 cut(s)	535, 699, 1010
BtsIMutI	CAGTG	1 cut(s)	417
BveI	ACCTGC	1 cut(s)	86
Cac8I	GCNNGC	2 cut(s)	335, 1162
Cfr10I	RCCGGY	2 cut(s)	319, 337
Cfr13I	GGNCC	1 cut(s)	81
ClaI	ATCGAT	1 cut(s)	676
CseI	GACGC	1 cut(s)	461
Csp6I	GTAC	4 cut(s)	194, 341, 505, 1050
CviAII	CATG	5 cut(s)	35, 149, 553, 736, 1015
CviQI	GTAC	4 cut(s)	194, 341, 505, 1050
DdeI	CTNAG	2 cut(s)	225, 1118
DpnI	GATC	2 cut(s)	675, 1173
DpnII	GATC	2 cut(s)	673, 1171
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
Eco130I	CCWWGG	3 cut(s)	34, 735, 1131
Eco24I	GRGCYC	1 cut(s)	772
Eco32I	GATATC	1 cut(s)	571
Eco47I	GGWCC	1 cut(s)	81
Eco57I	CTGAAG	2 cut(s)	698, 1128
Eco91I	GGTNACC	1 cut(s)	256
EcoO65I	GGTNACC	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	202
EcoRV	GATATC	1 cut(s)	571
EcoT14I	CCWWGG	3 cut(s)	34, 735, 1131
EcoT22I	ATGCAT	1 cut(s)	811
EcoT38I	GRGCYC	1 cut(s)	772
ErhI	CCWWGG	3 cut(s)	34, 735, 1131
FaeI	CATG	5 cut(s)	38, 152, 556, 739, 1018
FatI	CATG	5 cut(s)	34, 148, 552, 735, 1014
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	8 cut(s)	130, 222, 270, 456, 1023, 1026, 1029, 1041
FokI	GGATG	3 cut(s)	542, 706, 997
FriOI	GRGCYC	1 cut(s)	772
Fsp4HI	GCNGC	8 cut(s)	130, 222, 270, 456, 1023, 1026, 1029, 1041
FspBI	CTAG	6 cut(s)	197, 476, 702, 719, 903, 962
GluI	GCNGC	8 cut(s)	130, 222, 270, 456, 1023, 1026, 1029, 1041
GsaI	CCCAGC	1 cut(s)	157
GsuI	CTGGAG	1 cut(s)	1218
HapII	CCGG	2 cut(s)	320, 338
HgaI	GACGC	1 cut(s)	461
Hin1II	CATG	5 cut(s)	38, 152, 556, 739, 1018
HindIII	AAGCTT	1 cut(s)	915
HinfI	GANTC	4 cut(s)	367, 379, 678, 975
HpaII	CCGG	2 cut(s)	320, 338
HphI	GGTGA	2 cut(s)	751, 918
Hpy166II	GTNNAC	3 cut(s)	214, 619, 955
Hpy188I	TCNGA	3 cut(s)	301, 802, 1108
Hpy188III	TCNNGA	4 cut(s)	71, 364, 1072, 1189
Hpy8I	GTNNAC	3 cut(s)	214, 619, 955
Hpy99I	CGWCG	1 cut(s)	1230
HpyAV	CCTTC	6 cut(s)	11, 45, 107, 247, 349, 1150
HpyCH4III	ACNGT	2 cut(s)	661, 877
HpyCH4V	TGCA	5 cut(s)	170, 248, 809, 853, 1028
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1028, 1037
HpyF3I	CTNAG	2 cut(s)	225, 1118
Hsp92II	CATG	5 cut(s)	38, 152, 556, 739, 1018
Kzo9I	GATC	2 cut(s)	673, 1171
LmnI	GCTCC	1 cut(s)	775
Lsp1109I	GCAGC	7 cut(s)	233, 281, 467, 1009, 1012, 1027, 1040
LweI	GCATC	5 cut(s)	229, 627, 735, 755, 1053
MaeI	CTAG	6 cut(s)	197, 476, 702, 719, 903, 962
MaeIII	GTNAC	3 cut(s)	256, 697, 1100
MalI	GATC	2 cut(s)	675, 1173
MboI	GATC	2 cut(s)	673, 1171
MboII	GAAGA	8 cut(s)	86, 130, 187, 290, 317, 536, 955, 1121
MhlI	GDGCHC	1 cut(s)	772
MluCI	AATT	7 cut(s)	108, 500, 574, 626, 669, 825, 1242
MlyI	GAGTC	2 cut(s)	361, 984
MmeI	TCCRAC	3 cut(s)	523, 840, 905
MnlI	CCTC	8 cut(s)	85, 323, 520, 579, 605, 684, 699, 751
Mph1103I	ATGCAT	1 cut(s)	811
MseI	TTAA	1 cut(s)	1176
MspA1I	CMGCKG	4 cut(s)	157, 272, 458, 1031
MspI	CCGG	2 cut(s)	320, 338
MspR9I	CCNGG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	2 cut(s)	1028, 1037
NcoI	CCATGG	2 cut(s)	34, 735
NdeII	GATC	2 cut(s)	673, 1171
NlaIII	CATG	5 cut(s)	38, 152, 556, 739, 1018
NlaIV	GGNNCC	3 cut(s)	56, 188, 771
NmeAIII	GCCGAG	1 cut(s)	563
NsiI	ATGCAT	1 cut(s)	811
PfeI	GAWTC	2 cut(s)	379, 678
PflMI	CCANNNNNTGG	1 cut(s)	160
PkrI	GCNGC	8 cut(s)	131, 223, 271, 457, 1024, 1027, 1030, 1042
PleI	GAGTC	2 cut(s)	361, 983
PpsI	GAGTC	2 cut(s)	361, 983
Psp6I	CCWGG	1 cut(s)	202
PspEI	GGTNACC	1 cut(s)	256
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	3 cut(s)	56, 188, 771
PspPI	GGNCC	1 cut(s)	81
PstI	CTGCAG	2 cut(s)	855, 1030
PvuII	CAGCTG	4 cut(s)	157, 272, 458, 1031
RsaI	GTAC	4 cut(s)	195, 342, 506, 1051
RsaNI	GTAC	4 cut(s)	194, 341, 505, 1050
SaqAI	TTAA	1 cut(s)	1176
SatI	GCNGC	8 cut(s)	130, 222, 270, 456, 1023, 1026, 1029, 1041
Sau3AI	GATC	2 cut(s)	673, 1171
Sau96I	GGNCC	1 cut(s)	81
ScaI	AGTACT	1 cut(s)	195
SchI	GAGTC	2 cut(s)	361, 984
ScrFI	CCNGG	1 cut(s)	204
SduI	GDGCHC	1 cut(s)	772
SfaNI	GCATC	5 cut(s)	229, 627, 735, 755, 1053
SfcI	CTRYAG	2 cut(s)	851, 1026
SinI	GGWCC	1 cut(s)	81
SpeI	ACTAGT	1 cut(s)	196
Sse9I	AATT	7 cut(s)	108, 500, 574, 626, 669, 825, 1242
SsiI	CCGC	1 cut(s)	130
SspMI	CTAG	6 cut(s)	197, 476, 702, 719, 903, 962
StyD4I	CCNGG	1 cut(s)	202
StyI	CCWWGG	3 cut(s)	34, 735, 1131
TaaI	ACNGT	2 cut(s)	661, 877
TaqI	TCGA	6 cut(s)	105, 377, 391, 495, 676, 1154
TasI	AATT	7 cut(s)	108, 500, 574, 626, 669, 825, 1242
TatI	WGTACW	3 cut(s)	193, 504, 1049
TauI	GCSGC	1 cut(s)	132
TfiI	GAWTC	2 cut(s)	379, 678
Tru1I	TTAA	1 cut(s)	1176
Tru9I	TTAA	1 cut(s)	1176
TscAI	CASTG	1 cut(s)	424
TseI	GCWGC	7 cut(s)	221, 269, 455, 1022, 1025, 1028, 1040
TspDTI	ATGAA	6 cut(s)	137, 291, 318, 486, 513, 956
TspRI	CASTG	1 cut(s)	424
Van91I	CCANNNNNTGG	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	81
XapI	RAATTY	3 cut(s)	626, 825, 1242
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	6 cut(s)	197, 476, 702, 719, 903, 962
ZrmI	AGTACT	1 cut(s)	195
Zsp2I	ATGCAT	1 cut(s)	811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.