pycom03g01920

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0001255
Physical Location & Seq
Forward (+)
1441667 .. 1448115
6449 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g01920.2

Sequence Viewer

Length: 1257 bp
ATGGAGGAAGTCAGAGCAGCGGTTGTTCCACAGCAACCCAAAGGTGGTGATGAACTCAGAAGGAACAGGCGAGTTCTTCAGGACATTGGCAATCGCCCCATCACTAGGAGTTTTCATGCACAACTGATAGCAAAGGCACAAGAAAAAGGAGTTAACAATGCGAACCCTGTGGTGCTGCCGGTGCTTGATGATAAGGTAGCTCTCAATCGAAAGCGTTTTCCGGCCAAGAAGGTAGTCCCAAGGAAGGAAATTGAAAAGCCAAAAACTGAGGCCGTGGTTGTTATAAGTTCTGATGAAGAAGAAGAAAAGAAGGAACCTGTTAATCGATGCAAGCCAGAAGAAGTGAGGAAGGAAGTCAAGACTCTGACTTCAATCCTCACAGCTCGAAGCAAGGCTATGGCTGTTGGAGTGAACACCAAGCCGAAAGAAAAGATTGTTGAAATCGATTCAGCTGATGTCAACGATGAATTAGCGGTGGTTGAATACATTGATGACTTGTACAAGTTCTACAAGCTCACCGAAAATGATAGCCGAGTTCATGATTACATGGAGTCACAGCCAGACATAAACTCGAAGATGAGATCAATTCTCGTAGACTGGTTGGTAGAGGTTCACAAGAAATTCGAGCTGATGCCTGAAACCTTCTACCTGACTGTGAACATACTTGATCGGTACCTTTCAATGAAGATCGTTTCTAGGAGGGAACTTCAGCTAGTTGGCATTAGTTCTATGGTCATAGCATCCAAATATGAGGAAATCTGGGCTCCACAGGTCAATGACTTTGTTTGCTTGTCAGACTATGCATACTCTGCCGATCAGATACTTCGCATGGAGAAAGCAATTCTCGGGAAGCTGGAGTGGTATCTGACAGTTCCAACCCCTTATGTCTTCCTGTCTCGATATATCAAAGCATCTGTTTCGCCTGATGTGGAGATGAAGAACATGGTTTTCTTTCTAGCTGAGCTCGGAATCCTGCATTATCAGACTATCATTCTGTACTCCCCATCCATGATATCTGCTGCCGCTGTCTATGCTGCACGTTATACTCTGAATAAGATTCCTGTCTGGACTGAAACTTTGAAGCACCACACTGGCCACTCTGAAGAACAGTTGAGGGACTGTGCCAAACTCTTGGTTGGCCTTCACTCGAATATTGCAGAAAGTAAACTTCAAGCAGTTTACCGGAAATTCTCAAGACCGGAGTATGGTGCTGTTGCTCTTTTTGTTCCAGCCAAAAGTTTTCACTCATCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

419

Amino Acids

47.76

Weight (kDa)

8.62

Isoelectric Point (pI)

56.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 284
Acc65I GGTACC 1 cut(s) 672
AccB1I GGYRCC 1 cut(s) 672
AccI GTMKAC 1 cut(s) 594
AciI CCGC 3 cut(s) 20, 473, 1023
AcoI YGGCCR 2 cut(s) 222, 1093
AcsI RAATTY 2 cut(s) 620, 1187
AcuI CTGAAG 3 cut(s) 62, 692, 1122
AfaI GTAC 3 cut(s) 500, 674, 998
AfiI CCNNNNNNNGG 4 cut(s) 44, 105, 244, 1205
AgsI TTSAA 7 cut(s) 254, 372, 440, 482, 681, 1081, 1172
AluBI AGCT 9 cut(s) 200, 383, 452, 514, 628, 712, 853, 959, 964
AluI AGCT 9 cut(s) 200, 383, 452, 514, 628, 712, 853, 959, 964
Alw21I GWGCWC 1 cut(s) 966
Alw26I GTCTC 1 cut(s) 900
Ama87I CYCGRG 1 cut(s) 845
AoxI GGCC 4 cut(s) 222, 270, 1093, 1138
ApeKI GCWGC 4 cut(s) 17, 175, 1019, 1034
ApoI RAATTY 2 cut(s) 620, 1187
ArsI GACNNNNNNTTYG 2 cut(s) 1060, 1092
Asp718I GGTACC 1 cut(s) 672
AsuHPI GGTGA 2 cut(s) 59, 508
AvaI CYCGRG 1 cut(s) 845
BalI TGGCCA 1 cut(s) 1095
BanI GGYRCC 1 cut(s) 672
BanII GRGCYC 2 cut(s) 766, 966
BbsI GAAGAC 1 cut(s) 880
Bbv12I GWGCWC 1 cut(s) 966
BbvI GCAGC 4 cut(s) 29, 162, 1006, 1021
BccI CCATC 2 cut(s) 107, 1012
BceAI ACGGC 1 cut(s) 257
BcgI CGANNNNNNTGC 2 cut(s) 900, 934
BcoDI GTCTC 1 cut(s) 900
BfaI CTAG 4 cut(s) 105, 696, 713, 956
BisI GCNGC 5 cut(s) 18, 176, 1020, 1023, 1035
BlpI GCTNAGC 1 cut(s) 960
BlsI GCNGC 5 cut(s) 19, 177, 1021, 1024, 1036
BmeT110I CYCGRG 1 cut(s) 845
BmiI GGNNCC 3 cut(s) 315, 674, 765
BmsI GCATC 4 cut(s) 317, 621, 749, 920
BpiI GAAGAC 1 cut(s) 880
BpmI CTGGAG 1 cut(s) 875
Bpu1102I GCTNAGC 1 cut(s) 960
BpuEI CTTGAG 1 cut(s) 1177
Bsa29I ATCGAT 2 cut(s) 325, 444
BsaJI CCNNGG 2 cut(s) 239, 273
BsaWI WCCGGW 2 cut(s) 1182, 1198
Bsc4I CCNNNNNNNGG 4 cut(s) 44, 105, 244, 1205
Bse118I RCCGGY 1 cut(s) 178
Bse1I ACTGG 2 cut(s) 602, 1096
BseCI ATCGAT 2 cut(s) 325, 444
BseDI CCNNGG 2 cut(s) 239, 273
BseGI GGATG 2 cut(s) 740, 1004
BseLI CCNNNNNNNGG 4 cut(s) 44, 105, 244, 1205
BseMII CTCAG 3 cut(s) 70, 258, 951
BseNI ACTGG 2 cut(s) 602, 1096
BseXI GCAGC 4 cut(s) 29, 162, 1006, 1021
BsgI GTGCAG 1 cut(s) 1020
BshFI GGCC 4 cut(s) 224, 272, 1095, 1140
BshNI GGYRCC 1 cut(s) 672
BshVI ATCGAT 2 cut(s) 325, 444
BsiHKAI GWGCWC 1 cut(s) 966
BsiHKCI CYCGRG 1 cut(s) 845
BsiSI CCGG 4 cut(s) 179, 221, 1183, 1199
BslFI GGGAC 2 cut(s) 221, 1130
BslI CCNNNNNNNGG 4 cut(s) 44, 105, 244, 1205
BsmAI GTCTC 1 cut(s) 900
BsmFI GGGAC 2 cut(s) 221, 1130
BsnI GGCC 4 cut(s) 224, 272, 1095, 1140
BsoBI CYCGRG 1 cut(s) 845
Bsp1286I GDGCHC 2 cut(s) 766, 966
Bsp1407I TGTACA 1 cut(s) 498
Bsp143I GATC 4 cut(s) 581, 667, 687, 814
Bsp1720I GCTNAGC 1 cut(s) 960
BspACI CCGC 3 cut(s) 20, 473, 1023
BspANI GGCC 4 cut(s) 224, 272, 1095, 1140
BspCNI CTCAG 3 cut(s) 69, 259, 952
BspDI ATCGAT 2 cut(s) 325, 444
BspHI TCATGA 2 cut(s) 538, 1253
BspLI GGNNCC 3 cut(s) 315, 674, 765
BspT107I GGYRCC 1 cut(s) 672
BsrFI RCCGGY 1 cut(s) 178
BsrGI TGTACA 1 cut(s) 498
BsrI ACTGG 2 cut(s) 602, 1096
BssAI RCCGGY 1 cut(s) 178
BssECI CCNNGG 2 cut(s) 239, 273
BssMI GATC 4 cut(s) 581, 667, 687, 814
BssT1I CCWWGG 1 cut(s) 239
Bst4CI ACNGT 4 cut(s) 655, 871, 1110, 1121
BstAPI GCANNNNNTGC 1 cut(s) 809
BstAUI TGTACA 1 cut(s) 498
BstC8I GCNNGC 1 cut(s) 332
BstDEI CTNAG 3 cut(s) 56, 267, 960
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 2 cut(s) 740, 1004
BstKTI GATC 4 cut(s) 584, 670, 690, 817
BstMAI GTCTC 1 cut(s) 900
BstMBI GATC 4 cut(s) 581, 667, 687, 814
BstMWI GCNNNNNNNGC 3 cut(s) 181, 809, 1031
BstV1I GCAGC 4 cut(s) 29, 162, 1006, 1021
BstV2I GAAGAC 1 cut(s) 880
BstXI CCANNNNNNTGG 1 cut(s) 1132
Bsu15I ATCGAT 2 cut(s) 325, 444
BsuRI GGCC 4 cut(s) 224, 272, 1095, 1140
BsuTUI ATCGAT 2 cut(s) 325, 444
BtgI CCRYGG 1 cut(s) 273
BtsCI GGATG 2 cut(s) 740, 1004
BtsIMutI CAGTG 1 cut(s) 1089
Cac8I GCNNGC 1 cut(s) 332
CciI TCATGA 2 cut(s) 538, 1253
Cfr10I RCCGGY 1 cut(s) 178
ClaI ATCGAT 2 cut(s) 325, 444
Csp6I GTAC 3 cut(s) 499, 673, 997
CviAII CATG 7 cut(s) 116, 539, 547, 829, 943, 1009, 1254
CviQI GTAC 3 cut(s) 499, 673, 997
DdeI CTNAG 3 cut(s) 56, 267, 960
DpnI GATC 4 cut(s) 583, 669, 689, 816
DpnII GATC 4 cut(s) 581, 667, 687, 814
EaeI YGGCCR 2 cut(s) 222, 1093
Ecl136II GAGCTC 1 cut(s) 964
Eco130I CCWWGG 1 cut(s) 239
Eco24I GRGCYC 2 cut(s) 766, 966
Eco32I GATATC 1 cut(s) 1014
Eco53kI GAGCTC 1 cut(s) 964
Eco57I CTGAAG 3 cut(s) 62, 692, 1122
Eco88I CYCGRG 1 cut(s) 845
EcoICRI GAGCTC 1 cut(s) 964
EcoRV GATATC 1 cut(s) 1014
EcoT14I CCWWGG 1 cut(s) 239
EcoT22I ATGCAT 1 cut(s) 805
EcoT38I GRGCYC 2 cut(s) 766, 966
ErhI CCWWGG 1 cut(s) 239
FaeI CATG 7 cut(s) 119, 542, 550, 832, 946, 1012, 1257
FaqI GGGAC 2 cut(s) 221, 1130
FatI CATG 7 cut(s) 115, 538, 546, 828, 942, 1008, 1253
FblI GTMKAC 1 cut(s) 594
Fnu4HI GCNGC 5 cut(s) 18, 176, 1020, 1023, 1035
FokI GGATG 2 cut(s) 727, 991
FriOI GRGCYC 2 cut(s) 766, 966
Fsp4HI GCNGC 5 cut(s) 18, 176, 1020, 1023, 1035
FspBI CTAG 4 cut(s) 105, 696, 713, 956
GluI GCNGC 5 cut(s) 18, 176, 1020, 1023, 1035
GsuI CTGGAG 1 cut(s) 875
HaeIII GGCC 4 cut(s) 224, 272, 1095, 1140
HapII CCGG 4 cut(s) 179, 221, 1183, 1199
Hin1II CATG 7 cut(s) 119, 542, 550, 832, 946, 1012, 1257
HincII GTYRAC 2 cut(s) 154, 460
HindII GTYRAC 2 cut(s) 154, 460
HinfI GANTC 5 cut(s) 361, 446, 551, 969, 1057
HpaI GTTAAC 1 cut(s) 154
HpaII CCGG 4 cut(s) 179, 221, 1183, 1199
HphI GGTGA 2 cut(s) 59, 508
Hpy166II GTNNAC 8 cut(s) 154, 412, 460, 595, 613, 658, 1166, 1180
Hpy188III TCNNGA 8 cut(s) 80, 358, 539, 847, 897, 1066, 1194, 1254
Hpy8I GTNNAC 8 cut(s) 154, 412, 460, 595, 613, 658, 1166, 1180
HpyAV CCTTC 7 cut(s) 54, 223, 238, 304, 343, 652, 1151
HpyCH4III ACNGT 4 cut(s) 655, 871, 1110, 1121
HpyCH4IV ACGT 1 cut(s) 1039
HpyCH4V TGCA 6 cut(s) 119, 330, 803, 976, 1037, 1157
HpyF10VI GCNNNNNNNGC 3 cut(s) 181, 809, 1031
HpyF3I CTNAG 3 cut(s) 56, 267, 960
HpySE526I ACGT 1 cut(s) 1039
Hsp92II CATG 7 cut(s) 119, 542, 550, 832, 946, 1012, 1257
KpnI GGTACC 1 cut(s) 676
KspAI GTTAAC 1 cut(s) 154
Kzo9I GATC 4 cut(s) 581, 667, 687, 814
LmnI GCTCC 1 cut(s) 769
Lsp1109I GCAGC 4 cut(s) 29, 162, 1006, 1021
LweI GCATC 4 cut(s) 317, 621, 749, 920
MaeI CTAG 4 cut(s) 105, 696, 713, 956
MaeII ACGT 1 cut(s) 1039
MaeIII GTNAC 1 cut(s) 552
MalI GATC 4 cut(s) 583, 669, 689, 816
MboI GATC 4 cut(s) 581, 667, 687, 814
MhlI GDGCHC 2 cut(s) 766, 966
MlsI TGGCCA 1 cut(s) 1095
MluCI AATT 6 cut(s) 249, 467, 585, 620, 840, 1187
MluNI TGGCCA 1 cut(s) 1095
MlyI GAGTC 2 cut(s) 355, 560
MmeI TCCRAC 2 cut(s) 385, 899
MnlI CCTC 7 cut(s) 262, 339, 386, 601, 693, 745, 1107
Mox20I TGGCCA 1 cut(s) 1095
Mph1103I ATGCAT 1 cut(s) 805
MscI TGGCCA 1 cut(s) 1095
MseI TTAA 2 cut(s) 153, 321
MslI CAYNNNNRTG 1 cut(s) 1252
Msp20I TGGCCA 1 cut(s) 1095
MspA1I CMGCKG 3 cut(s) 20, 452, 1025
MspI CCGG 4 cut(s) 179, 221, 1183, 1199
MwoI GCNNNNNNNGC 3 cut(s) 181, 809, 1031
NdeII GATC 4 cut(s) 581, 667, 687, 814
NlaIII CATG 7 cut(s) 119, 542, 550, 832, 946, 1012, 1257
NlaIV GGNNCC 3 cut(s) 315, 674, 765
NmeAIII GCCGAG 1 cut(s) 557
NmuCI GTSAC 1 cut(s) 552
NsiI ATGCAT 1 cut(s) 805
PagI TCATGA 2 cut(s) 538, 1253
PfeI GAWTC 3 cut(s) 446, 969, 1057
PkrI GCNGC 5 cut(s) 19, 177, 1021, 1024, 1036
PleI GAGTC 2 cut(s) 355, 559
PpsI GAGTC 2 cut(s) 355, 559
PsiI TTATAA 1 cut(s) 284
Psp124BI GAGCTC 1 cut(s) 966
PspN4I GGNNCC 3 cut(s) 315, 674, 765
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 3 cut(s) 500, 674, 998
RsaNI GTAC 3 cut(s) 499, 673, 997
RseI CAYNNNNRTG 1 cut(s) 1252
SacI GAGCTC 1 cut(s) 966
SaqAI TTAA 2 cut(s) 153, 321
SatI GCNGC 5 cut(s) 18, 176, 1020, 1023, 1035
Sau3AI GATC 4 cut(s) 581, 667, 687, 814
SchI GAGTC 2 cut(s) 355, 560
SduI GDGCHC 2 cut(s) 766, 966
SfaNI GCATC 4 cut(s) 317, 621, 749, 920
SmiMI CAYNNNNRTG 1 cut(s) 1252
SmlI CTYRAG 1 cut(s) 1192
SmoI CTYRAG 1 cut(s) 1192
Sse9I AATT 6 cut(s) 249, 467, 585, 620, 840, 1187
SsiI CCGC 3 cut(s) 20, 473, 1023
SspI AATATT 1 cut(s) 1153
SspMI CTAG 4 cut(s) 105, 696, 713, 956
SstI GAGCTC 1 cut(s) 966
StyI CCWWGG 1 cut(s) 239
TaaI ACNGT 4 cut(s) 655, 871, 1110, 1121
TaiI ACGT 1 cut(s) 1042
TaqI TCGA 8 cut(s) 208, 325, 385, 444, 572, 624, 898, 1148
TasI AATT 6 cut(s) 249, 467, 585, 620, 840, 1187
TatI WGTACW 2 cut(s) 498, 996
TauI GCSGC 1 cut(s) 1025
TfiI GAWTC 3 cut(s) 446, 969, 1057
Tru1I TTAA 2 cut(s) 153, 321
Tru9I TTAA 2 cut(s) 153, 321
TscAI CASTG 1 cut(s) 1096
TseFI GTSAC 1 cut(s) 552
TseI GCWGC 4 cut(s) 17, 175, 1019, 1034
Tsp45I GTSAC 1 cut(s) 552
TspDTI ATGAA 8 cut(s) 66, 104, 309, 480, 527, 698, 950, 1242
TspRI CASTG 1 cut(s) 1096
XapI RAATTY 2 cut(s) 620, 1187
XmiI GTMKAC 1 cut(s) 594
XspI CTAG 4 cut(s) 105, 696, 713, 956
Zsp2I ATGCAT 1 cut(s) 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.